Rh1DG119100

Protein FAR1-RELATED SEQUENCE 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003477
Physical Location & Seq
Reverse (-)
21690135 .. 21696712
6578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG119100.1

Sequence Viewer

Length: 1317 bp
ATGGACACTGAAGTTTTGGCAGATGTTGAAGCGGAAGACAGGGAACGTCACGGGACAGTAGACTCTGAATCTGATAAAGGGGTAAAGCAAAATGTAAATGATAGTTTTGCAGGGAGAGAAATAATTGTACAGGATGAGGATGGGAATGCTAAACCATATGTGGGAATGGAGTTCGAATCAGAGGATGCTGCCAAGGCTCTCTATGAAGCATATGCTAGGTGTGCTGGTTTTAGCACCCATGTTGGTCAGTTTAGTCGTAACAAGCCTGATGGACCAATAGTGACATGGGAATTTGCATGTTCAAGAGAGGTATTCAAAAGAAAGAATGTTGAAAGTTGCAATGCTATGCTACGCGTAGAGAGAAAAGATGCAAACACTTGGGTTGCCACTAAGTTTATTGAGGACCACAACCATTCGATGGAAAGTCCAAATAAAGTCCATTACCTTCGACCGCGTAGACACTTTGCAGGTGCTACAAAGAATACAGCTGAGACTTTGGATGTCACTTCTGATGCTTATGTCTCTATGGATGGGAATCCTGTCCCTTATGAACCAAATCGTGGAGATGAACAGATCTCAGATCCGCAAGGTGTTGAGATACTCACTGTGCGGTTCAACAATTTATGTCAGGAAGCCATTAAATATGCGGAAGAAGGGGCAGTTGCTGTAGAGACTTACAATGCAGCAATGATTGCTCTACGAGACAGTGGGAAAAAGATTGCTGATTTGAAGAAAAATGTTGCTAAAGTTGCACCTCCTAGCTCTCAGGGTAGTGGAAGTATTCAGGAAGAAAATATGAAAAAAGCTTCTTTGCCATTTGGTGAAATGGTCCCCCCATTGTGGCCTTGGCAAGAAGCATTGCCACATCGCTTTAATCTTAATGATGTCGGAGTTCCTGTTTCTGATATAAATCAGCCTAGCATGGCGGGCTCTATTCAACCCGATGGTGGGCATCCTGATAATACGGTGGTTTATACTTGCTTCAAGTCCATGACATGGGTCATAGAAAATAAGAATTCAACATCAGCTGGAAAAGTTGCTGTTATTAACTTGAAGCTGCAAGATTATCGTAAGAACCCGGCAGGAGAAACAGATGTACAATTTAGGGTAACCAGGGTTACACTAGAGCCTATGTTAAGATCGATGGCCTACATTGGTCAGCAACTTTCTGCACCAGCCAACAGAGTTGCTGTTATCAATCTCAAGCTTCAAGATACAAATACAACATCTGGAGAAACAGAAGTCAAGTTTCAAGTGTCCAGAGATACACTAGATTCCATGTTGAGATCAATGGCTTACATCCGTGAACAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COMM_domain FAR1 MULE SWIM

Protein Analysis

438

Amino Acids

48.69

Weight (kDa)

5.26

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 67 - 140 4.3e-12 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 458
Acc36I ACCTGC 1 cut(s) 458
AccB7I CCANNNNNTGG 3 cut(s) 418, 560, 996
AccI GTMKAC 2 cut(s) 60, 457
AccII CGCG 2 cut(s) 354, 454
AciI CCGC 6 cut(s) 32, 452, 584, 610, 647, 926
AclWI GGATC 1 cut(s) 575
AcsI RAATTY 2 cut(s) 290, 1015
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 2 cut(s) 129, 1098
AfiI CCNNNNNNNGG 7 cut(s) 161, 418, 560, 840, 947, 948, 996
AflIII ACRYGT 1 cut(s) 352
AjnI CCWGG 1 cut(s) 1112
AluBI AGCT 6 cut(s) 488, 762, 806, 1028, 1057, 1207
AluI AGCT 6 cut(s) 488, 762, 806, 1028, 1057, 1207
Alw26I GTCTC 4 cut(s) 485, 526, 665, 696
AlwI GGATC 1 cut(s) 575
AlwNI CAGNNNCTG 1 cut(s) 665
AoxI GGCC 2 cut(s) 842, 1146
ApeKI GCWGC 3 cut(s) 188, 683, 1057
ApoI RAATTY 2 cut(s) 290, 1015
AspS9I GGNCC 3 cut(s) 272, 403, 829
AsuC2I CCSGG 1 cut(s) 1079
AsuHPI GGTGA 1 cut(s) 833
AsuII TTCGAA 1 cut(s) 174
AvaII GGWCC 3 cut(s) 272, 403, 829
BanII GRGCYC 1 cut(s) 932
BbsI GAAGAC 1 cut(s) 42
BbvI GCAGC 3 cut(s) 175, 695, 1044
BccI CCATC 6 cut(s) 134, 263, 412, 524, 938, 1138
BcgI CGANNNNNNTGC 2 cut(s) 1049, 1083
BciT130I CCWGG 1 cut(s) 1114
BcnI CCSGG 1 cut(s) 1079
BcoDI GTCTC 4 cut(s) 485, 526, 665, 696
BfaI CTAG 5 cut(s) 216, 759, 918, 1124, 1271
BfmI CTRYAG 1 cut(s) 666
BfuAI ACCTGC 1 cut(s) 458
BglII AGATCT 1 cut(s) 573
BisI GCNGC 3 cut(s) 189, 684, 1058
BlsI GCNGC 3 cut(s) 190, 685, 1059
Bme1390I CCNGG 2 cut(s) 1079, 1114
Bme18I GGWCC 3 cut(s) 272, 403, 829
BmgT120I GGNCC 3 cut(s) 272, 403, 829
BmiI GGNNCC 1 cut(s) 831
BmrFI CCNGG 2 cut(s) 1079, 1114
BmsI GCATC 4 cut(s) 175, 358, 502, 961
BoxI GACNNNNGTC 1 cut(s) 998
BpiI GAAGAC 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 1251
Bpu14I TTCGAA 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 1187
BpuMI CCSGG 1 cut(s) 1079
Bsa29I ATCGAT 1 cut(s) 1142
BsaBI GATNNNNATC 2 cut(s) 534, 909
BsaJI CCNNGG 3 cut(s) 192, 845, 1113
BsaXI ACNNNNNCTCC 2 cut(s) 882, 912
Bsc4I CCNNNNNNNGG 7 cut(s) 161, 418, 560, 840, 947, 948, 996
Bse3DI GCAATG 3 cut(s) 346, 693, 857
Bse8I GATNNNNATC 2 cut(s) 534, 909
BseBI CCWGG 1 cut(s) 1114
BseCI ATCGAT 1 cut(s) 1142
BseDI CCNNGG 3 cut(s) 192, 845, 1113
BseGI GGATG 7 cut(s) 139, 145, 190, 505, 535, 952, 1299
BseJI GATNNNNATC 2 cut(s) 534, 909
BseLI CCNNNNNNNGG 7 cut(s) 161, 418, 560, 840, 947, 948, 996
BseMI GCAATG 3 cut(s) 346, 693, 857
BseMII CTCAG 3 cut(s) 480, 591, 779
BseXI GCAGC 3 cut(s) 175, 695, 1044
BsgI GTGCAG 1 cut(s) 1155
Bsh1236I CGCG 2 cut(s) 354, 454
Bsh1285I CGRYCG 1 cut(s) 452
BshFI GGCC 2 cut(s) 844, 1148
BshVI ATCGAT 1 cut(s) 1142
BsiEI CGRYCG 1 cut(s) 452
BsiSI CCGG 1 cut(s) 1079
BslFI GGGAC 3 cut(s) 67, 527, 815
BslI CCNNNNNNNGG 7 cut(s) 161, 418, 560, 840, 947, 948, 996
BsmAI GTCTC 4 cut(s) 485, 526, 665, 696
BsmFI GGGAC 3 cut(s) 67, 527, 815
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 2 cut(s) 844, 1148
Bsp119I TTCGAA 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 932
Bsp1407I TGTACA 2 cut(s) 127, 1096
Bsp143I GATC 4 cut(s) 573, 580, 1139, 1286
BspACI CCGC 6 cut(s) 32, 452, 584, 610, 647, 926
BspANI GGCC 2 cut(s) 844, 1148
BspCNI CTCAG 3 cut(s) 481, 590, 778
BspDI ATCGAT 1 cut(s) 1142
BspFNI CGCG 2 cut(s) 354, 454
BspLI GGNNCC 1 cut(s) 831
BspMI ACCTGC 1 cut(s) 458
BspPI GGATC 1 cut(s) 575
BspT104I TTCGAA 1 cut(s) 174
BsrDI GCAATG 3 cut(s) 346, 693, 857
BsrGI TGTACA 2 cut(s) 127, 1096
BssECI CCNNGG 3 cut(s) 192, 845, 1113
BssMI GATC 4 cut(s) 573, 580, 1139, 1286
BssT1I CCWWGG 2 cut(s) 192, 845
Bst2UI CCWGG 1 cut(s) 1114
Bst4CI ACNGT 4 cut(s) 58, 607, 707, 967
BstAPI GCANNNNNTGC 1 cut(s) 692
BstAUI TGTACA 2 cut(s) 127, 1096
BstBI TTCGAA 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 928
BstDEI CTNAG 4 cut(s) 390, 489, 577, 765
BstEII GGTNACC 1 cut(s) 1108
BstF5I GGATG 7 cut(s) 139, 145, 190, 505, 535, 952, 1299
BstFNI CGCG 2 cut(s) 354, 454
BstKTI GATC 4 cut(s) 576, 583, 1142, 1289
BstMAI GTCTC 4 cut(s) 485, 526, 665, 696
BstMBI GATC 4 cut(s) 573, 580, 1139, 1286
BstMCI CGRYCG 1 cut(s) 452
BstMWI GCNNNNNNNGC 5 cut(s) 194, 221, 692, 749, 927
BstNI CCWGG 1 cut(s) 1114
BstNSI RCATGY 1 cut(s) 300
BstPAI GACNNNNGTC 1 cut(s) 998
BstPI GGTNACC 1 cut(s) 1108
BstSCI CCNGG 2 cut(s) 1077, 1112
BstSFI CTRYAG 1 cut(s) 666
BstUI CGCG 2 cut(s) 354, 454
BstV1I GCAGC 3 cut(s) 175, 695, 1044
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 2 cut(s) 573, 580
BstYI RGATCY 2 cut(s) 573, 580
Bsu15I ATCGAT 1 cut(s) 1142
BsuRI GGCC 2 cut(s) 844, 1148
BsuTUI ATCGAT 1 cut(s) 1142
BtgZI GCGATG 1 cut(s) 851
BtsCI GGATG 7 cut(s) 139, 145, 190, 505, 535, 952, 1299
BtsIMutI CAGTG 3 cut(s) 6, 603, 712
BveI ACCTGC 1 cut(s) 458
Cac8I GCNNGC 1 cut(s) 928
CaiI CAGNNNCTG 1 cut(s) 665
Cfr13I GGNCC 3 cut(s) 272, 403, 829
ClaI ATCGAT 1 cut(s) 1142
Csp6I GTAC 2 cut(s) 128, 1097
CviAII CATG 7 cut(s) 239, 285, 297, 922, 991, 996, 1279
CviQI GTAC 2 cut(s) 128, 1097
DdeI CTNAG 4 cut(s) 390, 489, 577, 765
DpnI GATC 4 cut(s) 575, 582, 1141, 1288
DpnII GATC 4 cut(s) 573, 580, 1139, 1286
Eco130I CCWWGG 2 cut(s) 192, 845
Eco24I GRGCYC 1 cut(s) 932
Eco47I GGWCC 3 cut(s) 272, 403, 829
Eco57I CTGAAG 1 cut(s) 30
Eco91I GGTNACC 1 cut(s) 1108
EcoO65I GGTNACC 1 cut(s) 1108
EcoRI GAATTC 1 cut(s) 1015
EcoRII CCWGG 1 cut(s) 1112
EcoT14I CCWWGG 2 cut(s) 192, 845
EcoT38I GRGCYC 1 cut(s) 932
ErhI CCWWGG 2 cut(s) 192, 845
FaeI CATG 7 cut(s) 242, 288, 300, 925, 994, 999, 1282
FaqI GGGAC 3 cut(s) 67, 527, 815
FatI CATG 7 cut(s) 238, 284, 296, 921, 990, 995, 1278
FauI CCCGC 1 cut(s) 919
FauNDI CATATG 2 cut(s) 157, 211
FblI GTMKAC 2 cut(s) 60, 457
Fnu4HI GCNGC 3 cut(s) 189, 684, 1058
FokI GGATG 7 cut(s) 146, 152, 197, 512, 542, 939, 1286
FriOI GRGCYC 1 cut(s) 932
Fsp4HI GCNGC 3 cut(s) 189, 684, 1058
FspBI CTAG 5 cut(s) 216, 759, 918, 1124, 1271
GluI GCNGC 3 cut(s) 189, 684, 1058
GsuI CTGGAG 1 cut(s) 1251
HaeIII GGCC 2 cut(s) 844, 1148
HapII CCGG 1 cut(s) 1079
Hin1II CATG 7 cut(s) 242, 288, 300, 925, 994, 999, 1282
HindIII AAGCTT 2 cut(s) 804, 1205
HinfI GANTC 5 cut(s) 62, 68, 176, 535, 1274
HpaII CCGG 1 cut(s) 1079
HphI GGTGA 1 cut(s) 833
Hpy166II GTNNAC 3 cut(s) 61, 458, 1307
Hpy188I TCNGA 7 cut(s) 67, 73, 181, 511, 580, 890, 904
Hpy188III TCNNGA 7 cut(s) 303, 629, 785, 956, 1211, 1230, 1260
Hpy8I GTNNAC 3 cut(s) 61, 458, 1307
HpyAV CCTTC 2 cut(s) 455, 647
HpyCH4III ACNGT 4 cut(s) 58, 607, 707, 967
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 9 cut(s) 110, 296, 339, 371, 467, 683, 752, 1060, 1172
HpyF10VI GCNNNNNNNGC 5 cut(s) 194, 221, 692, 749, 927
HpyF3I CTNAG 4 cut(s) 390, 489, 577, 765
HpySE526I ACGT 1 cut(s) 46
Hsp92II CATG 7 cut(s) 242, 288, 300, 925, 994, 999, 1282
Kzo9I GATC 4 cut(s) 573, 580, 1139, 1286
Lsp1109I GCAGC 3 cut(s) 175, 695, 1044
LweI GCATC 4 cut(s) 175, 358, 502, 961
MaeI CTAG 5 cut(s) 216, 759, 918, 1124, 1271
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 6 cut(s) 47, 257, 280, 502, 1108, 1117
MalI GATC 4 cut(s) 575, 582, 1141, 1288
MboI GATC 4 cut(s) 573, 580, 1139, 1286
MboII GAAGA 4 cut(s) 47, 662, 742, 800
MflI RGATCY 2 cut(s) 573, 580
MhlI GDGCHC 1 cut(s) 932
MluCI AATT 5 cut(s) 123, 290, 619, 1015, 1100
MluI ACGCGT 1 cut(s) 352
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 868
MnlI CCTC 5 cut(s) 130, 175, 301, 394, 765
MseI TTAA 5 cut(s) 639, 873, 879, 1047, 1136
MspA1I CMGCKG 2 cut(s) 488, 1028
MspI CCGG 1 cut(s) 1079
MspR9I CCNGG 2 cut(s) 1079, 1114
Mva1269I GAATGC 1 cut(s) 151
MvaI CCWGG 1 cut(s) 1114
MvnI CGCG 2 cut(s) 354, 454
MwoI GCNNNNNNNGC 5 cut(s) 194, 221, 692, 749, 927
NciI CCSGG 1 cut(s) 1079
NdeI CATATG 2 cut(s) 157, 211
NdeII GATC 4 cut(s) 573, 580, 1139, 1286
NlaIII CATG 7 cut(s) 242, 288, 300, 925, 994, 999, 1282
NlaIV GGNNCC 1 cut(s) 831
NmuCI GTSAC 3 cut(s) 47, 280, 502
NspI RCATGY 1 cut(s) 300
NspV TTCGAA 1 cut(s) 174
PaqCI CACCTGC 1 cut(s) 458
PctI GAATGC 1 cut(s) 151
PfeI GAWTC 4 cut(s) 68, 176, 535, 1274
PflMI CCANNNNNTGG 3 cut(s) 418, 560, 996
PkrI GCNGC 3 cut(s) 190, 685, 1059
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PshAI GACNNNNGTC 1 cut(s) 998
Psp6I CCWGG 1 cut(s) 1112
PspEI GGTNACC 1 cut(s) 1108
PspGI CCWGG 1 cut(s) 1112
PspN4I GGNNCC 1 cut(s) 831
PspPI GGNCC 3 cut(s) 272, 403, 829
PstNI CAGNNNCTG 1 cut(s) 665
PsuI RGATCY 2 cut(s) 573, 580
PvuII CAGCTG 2 cut(s) 488, 1028
RsaI GTAC 2 cut(s) 129, 1098
RsaNI GTAC 2 cut(s) 128, 1097
SaqAI TTAA 5 cut(s) 639, 873, 879, 1047, 1136
SatI GCNGC 3 cut(s) 189, 684, 1058
Sau3AI GATC 4 cut(s) 573, 580, 1139, 1286
Sau96I GGNCC 3 cut(s) 272, 403, 829
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 2 cut(s) 1079, 1114
SduI GDGCHC 1 cut(s) 932
SfaNI GCATC 4 cut(s) 175, 358, 502, 961
SfcI CTRYAG 1 cut(s) 666
SfuI TTCGAA 1 cut(s) 174
SinI GGWCC 3 cut(s) 272, 403, 829
SmlI CTYRAG 1 cut(s) 1202
SmoI CTYRAG 1 cut(s) 1202
Sse9I AATT 5 cut(s) 123, 290, 619, 1015, 1100
SsiI CCGC 6 cut(s) 32, 452, 584, 610, 647, 926
SspMI CTAG 5 cut(s) 216, 759, 918, 1124, 1271
StyD4I CCNGG 2 cut(s) 1077, 1112
StyI CCWWGG 2 cut(s) 192, 845
TaaI ACNGT 4 cut(s) 58, 607, 707, 967
TaiI ACGT 1 cut(s) 49
TaqI TCGA 4 cut(s) 174, 416, 448, 1142
TasI AATT 5 cut(s) 123, 290, 619, 1015, 1100
TatI WGTACW 2 cut(s) 127, 1096
TfiI GAWTC 4 cut(s) 68, 176, 535, 1274
Tru1I TTAA 5 cut(s) 639, 873, 879, 1047, 1136
Tru9I TTAA 5 cut(s) 639, 873, 879, 1047, 1136
TscAI CASTG 3 cut(s) 13, 610, 712
TseFI GTSAC 3 cut(s) 47, 280, 502
TseI GCWGC 3 cut(s) 188, 683, 1057
Tsp45I GTSAC 3 cut(s) 47, 280, 502
TspDTI ATGAA 4 cut(s) 219, 564, 582, 812
TspGWI ACGGA 1 cut(s) 1292
TspRI CASTG 3 cut(s) 13, 610, 712
Van91I CCANNNNNTGG 3 cut(s) 418, 560, 996
VpaK11BI GGWCC 3 cut(s) 272, 403, 829
XapI RAATTY 2 cut(s) 290, 1015
XceI RCATGY 1 cut(s) 300
XcmI CCANNNNNNNNNTGG 2 cut(s) 282, 843
XmiI GTMKAC 2 cut(s) 60, 457
XspI CTAG 5 cut(s) 216, 759, 918, 1124, 1271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.