Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003477

Physical Location & Seq

Genomic Coordinates Forward (+)

44657897 .. 44662402

Gene Structure 4506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00031570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTCGAGGAGCGACGATGTTGTTTCAATTCACGGGAAGAAGACCACATTCCTGGACAAGGAGACCATGGGGTATCTTCAAGACTATACCAAATCTAGTCTAGATGAAATCGAGGTGAAGTTCCAACTGACTAGGGACACTCTTGAAACAATGTTGAGGTCATTGACCTACATCGAAAACAACTCTCAAGCATGGGCAAATGGAGTTGGAGGTAAGGTGCCAGCAACAACAAGAGCAAACCCAAGTGAGCAACTCTTACAAATCCAACAAGAATTGGCCATGAAAGGAGATGATACAATCGCGACATGCGGTCGCCGAGGACCACGAAGGAAGAGTCGGTCGGCGATGGAGGAGATGGCGGCCGAAGAGGGTGGTGAGAGTGCGAGCGGCCGCCGGGTTTCGGGGAGGACGGTGGTGAAGAAGGGAGGGATCTCGGGAAGCCGTTCCCGCATATTGGGAGCCGGTACCGGATGGGTTCCGAGCAATCCAAGTATGATGGGTTCGTCTCGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COMM_domain

Protein Analysis

171

Amino Acids

18.55

Weight (kDa)

9.51

Isoelectric Point (pI)

65.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003477)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04941 FvH4_7g04941 FvH4_7g04941
malus_domestica	MD02G1265400.v1.1 MD07G1054000.v1.1
prunus_persica	Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1
pyrus_communis	pycom07g04180
rosa_chinensis	RchiOBHm_Chr1g0331031 RchiOBHm_Chr1g0338891
rosa_multiflora	Rmu_co8407023.1_g000001 Rmu_sc0002515.1_g000008
rosa_roxburghii	Rroxscaffold_1G00031570 Rroxscaffold_4G00313750 Rroxscaffold_4G00319540
rosa_rugosa	Rorug01G0091800
rosa_samantha	Rh1AG113400 Rh1BG087300 Rh1CG110300 Rh1DG119100
rosa_wichuraiana	Rw1G009250 Rw3G019960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	464
AccB1I	GGYRCC	2 cut(s)	217, 464
AccBSI	CCGCTC	1 cut(s)	387
AccII	CGCG	1 cut(s)	302
AciI	CCGC	5 cut(s)	309, 359, 387, 391, 448
AclWI	GGATC	1 cut(s)	437
AcoI	YGGCCR	3 cut(s)	276, 360, 388
AfaI	GTAC	1 cut(s)	466
AfiI	CCNNNNNNNGG	3 cut(s)	58, 400, 454
AgsI	TTSAA	3 cut(s)	27, 80, 146
AhdI	GACNNNNNGTC	1 cut(s)	309
AjnI	CCWGG	1 cut(s)	51
Alw26I	GTCTC	2 cut(s)	56, 510
AlwI	GGATC	1 cut(s)	437
Ama87I	CYCGRG	1 cut(s)	433
AoxI	GGCC	3 cut(s)	276, 360, 388
ArsI	GACNNNNNNTTYG	2 cut(s)	319, 351
Asp700I	GAANNNNTTC	1 cut(s)	442
Asp718I	GGTACC	1 cut(s)	464
AspS9I	GGNCC	1 cut(s)	320
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	3 cut(s)	127, 386, 427
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	320
BalI	TGGCCA	1 cut(s)	278
BanI	GGYRCC	2 cut(s)	217, 464
BbsI	GAAGAC	1 cut(s)	47
BccI	CCATC	4 cut(s)	340, 349, 465, 490
BceAI	ACGGC	1 cut(s)	426
BciT130I	CCWGG	1 cut(s)	53
BcnI	CCSGG	1 cut(s)	395
BcoDI	GTCTC	2 cut(s)	56, 510
BfaI	CTAG	3 cut(s)	96, 101, 132
BisI	GCNGC	3 cut(s)	360, 388, 391
BlsI	GCNGC	3 cut(s)	361, 389, 392
Bme1390I	CCNGG	2 cut(s)	53, 395
Bme18I	GGWCC	1 cut(s)	320
BmeRI	GACNNNNNGTC	1 cut(s)	309
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	4 cut(s)	219, 460, 466, 477
BmrFI	CCNGG	2 cut(s)	53, 395
BpiI	GAAGAC	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	171
BpuMI	CCSGG	1 cut(s)	395
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	66, 316
BsaWI	WCCGGW	1 cut(s)	467
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 400, 454
Bse118I	RCCGGY	1 cut(s)	461
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	2 cut(s)	66, 316
BseGI	GGATG	1 cut(s)	476
BseLI	CCNNNNNNNGG	3 cut(s)	58, 400, 454
BseRI	GAGGAG	2 cut(s)	22, 365
BseX3I	CGGCCG	2 cut(s)	360, 388
Bsh1236I	CGCG	1 cut(s)	302
Bsh1285I	CGRYCG	4 cut(s)	313, 341, 363, 391
BshFI	GGCC	3 cut(s)	278, 362, 390
BshNI	GGYRCC	2 cut(s)	217, 464
BsiEI	CGRYCG	4 cut(s)	313, 341, 363, 391
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	3 cut(s)	394, 462, 468
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	3 cut(s)	58, 400, 454
BsmAI	GTCTC	2 cut(s)	56, 510
BsmBI	CGTCTC	1 cut(s)	510
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	3 cut(s)	278, 362, 390
Bso31I	GGTCTC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	433
Bsp143I	GATC	1 cut(s)	429
Bsp19I	CCATGG	1 cut(s)	66
Bsp68I	TCGCGA	1 cut(s)	302
BspACI	CCGC	5 cut(s)	309, 359, 387, 391, 448
BspANI	GGCC	3 cut(s)	278, 362, 390
BspFNI	CGCG	1 cut(s)	302
BspHI	TCATGA	1 cut(s)	512
BspLI	GGNNCC	4 cut(s)	219, 460, 466, 477
BspPI	GGATC	1 cut(s)	437
BspT107I	GGYRCC	2 cut(s)	217, 464
BspTNI	GGTCTC	1 cut(s)	56
BsrBI	CCGCTC	1 cut(s)	387
BsrFI	RCCGGY	1 cut(s)	461
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	2 cut(s)	66, 316
BssMI	GATC	1 cut(s)	429
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	2 cut(s)	326, 360
BstC8I	GCNNGC	2 cut(s)	222, 385
BstDSI	CCRYGG	1 cut(s)	66
BstENI	CCTNNNNNAGG	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	476
BstFNI	CGCG	1 cut(s)	302
BstKTI	GATC	1 cut(s)	432
BstMAI	GTCTC	2 cut(s)	56, 510
BstMBI	GATC	1 cut(s)	429
BstMCI	CGRYCG	4 cut(s)	313, 341, 363, 391
BstMWI	GCNNNNNNNGC	1 cut(s)	447
BstNI	CCWGG	1 cut(s)	53
BstNSI	RCATGY	1 cut(s)	309
BstSCI	CCNGG	2 cut(s)	51, 393
BstUI	CGCG	1 cut(s)	302
BstV2I	GAAGAC	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	429
BstXI	CCANNNNNNTGG	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	429
BstZI	CGGCCG	2 cut(s)	360, 388
BsuRI	GGCC	3 cut(s)	278, 362, 390
BtgI	CCRYGG	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	359
BtsCI	GGATG	1 cut(s)	476
BtuMI	TCGCGA	1 cut(s)	302
Cac8I	GCNNGC	2 cut(s)	222, 385
CciI	TCATGA	1 cut(s)	512
CciNI	GCGGCCGC	1 cut(s)	388
Cfr10I	RCCGGY	1 cut(s)	461
Cfr13I	GGNCC	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	465
CviAII	CATG	5 cut(s)	67, 192, 280, 306, 513
CviJI	RGCY	5 cut(s)	278, 362, 390, 441, 461
CviKI_1	RGCY	5 cut(s)	278, 362, 390, 441, 461
CviQI	GTAC	1 cut(s)	465
DpnI	GATC	1 cut(s)	431
DpnII	GATC	1 cut(s)	429
DriI	GACNNNNNGTC	1 cut(s)	309
EaeI	YGGCCR	3 cut(s)	276, 360, 388
EagI	CGGCCG	2 cut(s)	360, 388
Eam1104I	CTCTTC	2 cut(s)	326, 360
Eam1105I	GACNNNNNGTC	1 cut(s)	309
EarI	CTCTTC	2 cut(s)	326, 360
EclXI	CGGCCG	2 cut(s)	360, 388
Eco130I	CCWWGG	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	320
Eco52I	CGGCCG	2 cut(s)	360, 388
Eco88I	CYCGRG	1 cut(s)	433
EcoNI	CCTNNNNNAGG	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	510
FaeI	CATG	5 cut(s)	70, 195, 283, 309, 516
FaiI	YATR	8 cut(s)	68, 87, 193, 281, 307, 452, 494, 514
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	5 cut(s)	66, 191, 279, 305, 512
FauI	CCCGC	1 cut(s)	455
Fnu4HI	GCNGC	3 cut(s)	360, 388, 391
FokI	GGATG	1 cut(s)	483
Fsp4HI	GCNGC	3 cut(s)	360, 388, 391
FspBI	CTAG	3 cut(s)	96, 101, 132
GluI	GCNGC	3 cut(s)	360, 388, 391
HaeIII	GGCC	3 cut(s)	278, 362, 390
HapII	CCGG	3 cut(s)	394, 462, 468
Hin1II	CATG	5 cut(s)	70, 195, 283, 309, 516
HinfI	GANTC	1 cut(s)	334
HpaII	CCGG	3 cut(s)	394, 462, 468
HphI	GGTGA	3 cut(s)	127, 386, 427
Hpy188I	TCNGA	1 cut(s)	480
Hpy188III	TCNNGA	6 cut(s)	80, 101, 143, 301, 435, 513
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	2 cut(s)	321, 415
HpyCH4III	ACNGT	1 cut(s)	412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	447
Hsp92II	CATG	5 cut(s)	70, 195, 283, 309, 516
KpnI	GGTACC	1 cut(s)	468
Kzo9I	GATC	1 cut(s)	429
LmnI	GCTCC	2 cut(s)	9, 458
LpnPI	CCDG	6 cut(s)	38, 65, 234, 407, 475, 481
MaeI	CTAG	3 cut(s)	96, 101, 132
MalI	GATC	1 cut(s)	431
MbiI	CCGCTC	1 cut(s)	387
MboI	GATC	1 cut(s)	429
MboII	GAAGA	6 cut(s)	49, 52, 68, 343, 377, 430
MflI	RGATCY	1 cut(s)	429
MlsI	TGGCCA	1 cut(s)	278
MluCI	AATT	2 cut(s)	27, 272
MluNI	TGGCCA	1 cut(s)	278
MlyI	GAGTC	1 cut(s)	343
MmeI	TCCRAC	3 cut(s)	148, 187, 289
MnlI	CCTC	8 cut(s)	106, 150, 203, 311, 343, 361, 399, 419
Mox20I	TGGCCA	1 cut(s)	278
MroXI	GAANNNNTTC	1 cut(s)	442
MscI	TGGCCA	1 cut(s)	278
Msp20I	TGGCCA	1 cut(s)	278
MspI	CCGG	3 cut(s)	394, 462, 468
MspR9I	CCNGG	2 cut(s)	53, 395
MvaI	CCWGG	1 cut(s)	53
MvnI	CGCG	1 cut(s)	302
MwoI	GCNNNNNNNGC	1 cut(s)	447
NciI	CCSGG	1 cut(s)	395
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	1 cut(s)	429
NlaIII	CATG	5 cut(s)	70, 195, 283, 309, 516
NlaIV	GGNNCC	4 cut(s)	219, 460, 466, 477
NmeAIII	GCCGAG	1 cut(s)	341
NotI	GCGGCCGC	1 cut(s)	388
NruI	TCGCGA	1 cut(s)	302
NspI	RCATGY	1 cut(s)	309
PagI	TCATGA	1 cut(s)	512
PdmI	GAANNNNTTC	1 cut(s)	442
PfoI	TCCNGGA	1 cut(s)	51
PkrI	GCNGC	3 cut(s)	361, 389, 392
PleI	GAGTC	1 cut(s)	342
PpsI	GAGTC	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	4 cut(s)	219, 460, 466, 477
PspPI	GGNCC	1 cut(s)	320
PsrI	GAACNNNNNNTAC	2 cut(s)	484, 516
PsuI	RGATCY	1 cut(s)	429
RruI	TCGCGA	1 cut(s)	302
RsaI	GTAC	1 cut(s)	466
RsaNI	GTAC	1 cut(s)	465
SatI	GCNGC	3 cut(s)	360, 388, 391
Sau3AI	GATC	1 cut(s)	429
Sau96I	GGNCC	1 cut(s)	320
SchI	GAGTC	1 cut(s)	343
ScrFI	CCNGG	2 cut(s)	53, 395
SetI	ASST	5 cut(s)	117, 161, 170, 214, 219
SinI	GGWCC	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	27, 272
SsiI	CCGC	5 cut(s)	309, 359, 387, 391, 448
SspMI	CTAG	3 cut(s)	96, 101, 132
StyD4I	CCNGG	2 cut(s)	51, 393
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	412
TaqI	TCGA	3 cut(s)	5, 111, 174
TaqII	GACCGA	2 cut(s)	327, 498
TasI	AATT	2 cut(s)	27, 272
TauI	GCSGC	3 cut(s)	362, 390, 393
TspDTI	ATGAA	2 cut(s)	120, 296
VpaK11BI	GGWCC	1 cut(s)	320
XagI	CCTNNNNNAGG	1 cut(s)	56
XbaI	TCTAGA	1 cut(s)	100
XceI	RCATGY	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	442
XspI	CTAG	3 cut(s)	96, 101, 132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.