Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0014704

Physical Location & Seq

Genomic Coordinates Reverse (-)

4554220 .. 4554948

Gene Structure 729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1057100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGTCAATGCCTTCAGATTATACGAAGAACATAGCTCTGGTGGCTTTATAATGAATGCATTCACAACCATTTCTCCCTATGCCACAATGCATGATGATGTTTGCACATTAGCATTGGAAAAAAGGACTTCCATGGTCCTAATCCCATTTCACAAGCAATTCAATTCACTAAGTTGCATGGAGGAATTATCCAAACGTATAAGGTCTGTGAATCGAAACATTCTTCGAAATTCCCCATGCTCAGTTGGGATTCTCCTAGATCGTGGTACCTTGAACACCAACGCATCTCTATCATGCAAAATTGTGTACAGTATTGGGATTATCTTTGTAGAAGGACCTGATGACCGTGAGGCATTAGCATATGCAATGCGCATGACAGAGCACCCTAATGTCAGCCTCACGGTCGTTAGATTGGTGGACAATAGGAAATTCAATGTGCATAAAGAACATGATTCGGAGCTACTCAGCAAGTGTAAGATAGCAATTGCTGGGAGAAAACAACATGTTTACAAGGAGGAACGTGTTAAGGATAGCGTGGACATGATCAATGTGATTAGGCCCATGCAAAATTTTTATGACCTAATTGTGGTGGGGAGACGCCATGATTGTGATTCACCATTGTTCATGGGACTCAAAGAATGGAATGAGTTTCCGGAACTTGGGTTCATTGGAGATATGTTGGCATCTTCAGATTCCAATTGTGAGGTCTCGGTGTTGGTGGTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015672 GO:0015833 GO:0031410 GO:0031982 GO:0033036 GO:0033365 GO:0034613 GO:0042592 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

243

Amino Acids

27.5

Weight (kDa)

6.45

Isoelectric Point (pI)

47.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHX17_2nd	PF23256	1 - 99	2e-14	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	104 - 242	6.4e-16	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g39830 FvH4_3g39830
malus_domestica	MD03G1057100.v1.1 MD11G1059100.v1.1
prunus_persica	Prupe.6G047700_v2.0.a1
pyrus_communis	pycom11g04890
rosa_chinensis	RchiOBHm_Chr5g0071771
rosa_laevigata	RLG00000036244
rosa_multiflora	Rmu_sc0001113.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009450
rosa_rugosa	Rorug05G0414400 Rorug05G0414500
rosa_samantha	Rh5AG470500 Rh5BG490200 Rh5CG514200 Rh5DG500900
rosa_wichuraiana	Rw5G043720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	50
Acc16I	TGCGCA	1 cut(s)	371
Acc65I	GGTACC	1 cut(s)	266
AccB1I	GGYRCC	1 cut(s)	266
AccIII	TCCGGA	1 cut(s)	652
AcsI	RAATTY	3 cut(s)	229, 428, 568
AcuI	CTGAAG	1 cut(s)	672
AcyI	GRCGYC	1 cut(s)	598
AfaI	GTAC	2 cut(s)	268, 308
AfiI	CCNNNNNNNGG	2 cut(s)	586, 659
AflIII	ACRYGT	2 cut(s)	502, 520
AgsI	TTSAA	3 cut(s)	163, 274, 433
AloI	GAACNNNNNNTCC	2 cut(s)	647, 679
AluBI	AGCT	2 cut(s)	36, 460
AluI	AGCT	2 cut(s)	36, 460
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	2 cut(s)	589, 712
Aor13HI	TCCGGA	1 cut(s)	652
AoxI	GGCC	1 cut(s)	557
ApoI	RAATTY	3 cut(s)	229, 428, 568
Asp700I	GAANNNNTTC	1 cut(s)	59
Asp718I	GGTACC	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	372
AspS9I	GGNCC	3 cut(s)	136, 335, 558
AsuHPI	GGTGA	1 cut(s)	606
AsuII	TTCGAA	1 cut(s)	226
AvaII	GGWCC	2 cut(s)	136, 335
BanI	GGYRCC	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	384
BclI	TGATCA	1 cut(s)	543
BcoDI	GTCTC	2 cut(s)	589, 712
BfaI	CTAG	1 cut(s)	257
Bme18I	GGWCC	2 cut(s)	136, 335
BmgT120I	GGNCC	3 cut(s)	136, 335, 558
BmiI	GGNNCC	1 cut(s)	268
BmsI	GCATC	2 cut(s)	293, 692
Bpu14I	TTCGAA	1 cut(s)	226
BsaHI	GRCGYC	1 cut(s)	598
BsaI	GGTCTC	1 cut(s)	712
BsaJI	CCNNGG	1 cut(s)	132
BsaWI	WCCGGW	1 cut(s)	652
BsaXI	ACNNNNNCTCC	2 cut(s)	58, 88
Bsc4I	CCNNNNNNNGG	2 cut(s)	586, 659
Bse3DI	GCAATG	1 cut(s)	372
BseAI	TCCGGA	1 cut(s)	652
BseDI	CCNNGG	1 cut(s)	132
BseLI	CCNNNNNNNGG	2 cut(s)	586, 659
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	2 cut(s)	255, 478
BseYI	CCCAGC	1 cut(s)	488
Bsh1285I	CGRYCG	1 cut(s)	405
BshFI	GGCC	1 cut(s)	559
BshNI	GGYRCC	1 cut(s)	266
BsiEI	CGRYCG	1 cut(s)	405
BsiHKAI	GWGCWC	1 cut(s)	384
BsiSI	CCGG	1 cut(s)	653
BslFI	GGGAC	1 cut(s)	642
BslI	CCNNNNNNNGG	2 cut(s)	586, 659
BsmAI	GTCTC	2 cut(s)	589, 712
BsmBI	CGTCTC	1 cut(s)	589
BsmFI	GGGAC	1 cut(s)	642
BsmI	GAATGC	2 cut(s)	59, 61
BsnI	GGCC	1 cut(s)	559
Bso31I	GGTCTC	1 cut(s)	712
Bsp119I	TTCGAA	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp13I	TCCGGA	1 cut(s)	652
Bsp1407I	TGTACA	1 cut(s)	306
Bsp143I	GATC	2 cut(s)	259, 543
Bsp19I	CCATGG	1 cut(s)	132
BspANI	GGCC	1 cut(s)	559
BspCNI	CTCAG	2 cut(s)	254, 477
BspEI	TCCGGA	1 cut(s)	652
BspLI	GGNNCC	1 cut(s)	268
BspT104I	TTCGAA	1 cut(s)	226
BspT107I	GGYRCC	1 cut(s)	266
BspTNI	GGTCTC	1 cut(s)	712
BsrDI	GCAATG	1 cut(s)	372
BsrGI	TGTACA	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	2 cut(s)	259, 543
BssNI	GRCGYC	1 cut(s)	598
BssT1I	CCWWGG	1 cut(s)	132
Bst4CI	ACNGT	3 cut(s)	311, 347, 403
BstACI	GRCGYC	1 cut(s)	598
BstAUI	TGTACA	1 cut(s)	306
BstBI	TTCGAA	1 cut(s)	226
BstDEI	CTNAG	3 cut(s)	170, 241, 464
BstDSI	CCRYGG	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	2 cut(s)	262, 546
BstMAI	GTCTC	2 cut(s)	589, 712
BstMBI	GATC	2 cut(s)	259, 543
BstMCI	CGRYCG	1 cut(s)	405
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNSI	RCATGY	1 cut(s)	506
BsuRI	GGCC	1 cut(s)	559
BtgI	CCRYGG	1 cut(s)	132
CfoI	GCGC	1 cut(s)	372
Cfr13I	GGNCC	3 cut(s)	136, 335, 558
CseI	GACGC	1 cut(s)	606
Csp6I	GTAC	2 cut(s)	267, 307
CviJI	RGCY	5 cut(s)	36, 45, 396, 460, 559
CviKI_1	RGCY	5 cut(s)	36, 45, 396, 460, 559
CviQI	GTAC	2 cut(s)	267, 307
DdeI	CTNAG	3 cut(s)	170, 241, 464
DpnI	GATC	2 cut(s)	261, 545
DpnII	GATC	2 cut(s)	259, 543
Eco130I	CCWWGG	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	712
Eco47I	GGWCC	2 cut(s)	136, 335
Eco57I	CTGAAG	1 cut(s)	672
EcoO109I	RGGNCCY	1 cut(s)	335
EcoT14I	CCWWGG	1 cut(s)	132
EcoT22I	ATGCAT	2 cut(s)	61, 93
ErhI	CCWWGG	1 cut(s)	132
Esp3I	CGTCTC	1 cut(s)	589
FaqI	GGGAC	1 cut(s)	642
FauNDI	CATATG	1 cut(s)	361
FbaI	TGATCA	1 cut(s)	543
FspAI	RTGCGCAY	1 cut(s)	371
FspBI	CTAG	1 cut(s)	257
FspI	TGCGCA	1 cut(s)	371
GlaI	GCGC	1 cut(s)	371
GsaI	CCCAGC	1 cut(s)	492
HaeIII	GGCC	1 cut(s)	559
HapII	CCGG	1 cut(s)	653
HgaI	GACGC	1 cut(s)	606
HhaI	GCGC	1 cut(s)	372
Hin1I	GRCGYC	1 cut(s)	598
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HinfI	GANTC	6 cut(s)	211, 250, 452, 611, 630, 692
HpaII	CCGG	1 cut(s)	653
HphI	GGTGA	1 cut(s)	606
Hpy166II	GTNNAC	4 cut(s)	307, 418, 508, 538
Hpy188I	TCNGA	3 cut(s)	17, 457, 691
Hpy188III	TCNNGA	1 cut(s)	653
Hpy8I	GTNNAC	4 cut(s)	307, 418, 508, 538
HpyAV	CCTTC	2 cut(s)	22, 326
HpyCH4III	ACNGT	3 cut(s)	311, 347, 403
HpyCH4IV	ACGT	2 cut(s)	196, 520
HpyCH4V	TGCA	9 cut(s)	59, 91, 105, 177, 297, 365, 439, 565, 724
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	3 cut(s)	170, 241, 464
HpySE526I	ACGT	2 cut(s)	196, 520
Hsp92I	GRCGYC	1 cut(s)	598
HspAI	GCGC	1 cut(s)	370
Kpn2I	TCCGGA	1 cut(s)	652
KpnI	GGTACC	1 cut(s)	270
Ksp22I	TGATCA	1 cut(s)	543
Kzo9I	GATC	2 cut(s)	259, 543
LmnI	GCTCC	1 cut(s)	457
LpnPI	CCDG	4 cut(s)	24, 351, 474, 666
LweI	GCATC	2 cut(s)	293, 692
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	2 cut(s)	196, 520
MalI	GATC	2 cut(s)	261, 545
MboI	GATC	2 cut(s)	259, 543
MboII	GAAGA	3 cut(s)	38, 215, 678
MfeI	CAATTG	2 cut(s)	483, 697
MhlI	GDGCHC	1 cut(s)	384
MlyI	GAGTC	1 cut(s)	624
MnlI	CCTC	5 cut(s)	175, 343, 407, 508, 697
Mph1103I	ATGCAT	2 cut(s)	61, 93
MroI	TCCGGA	1 cut(s)	652
MroXI	GAANNNNTTC	1 cut(s)	59
MseI	TTAA	1 cut(s)	525
MslI	CAYNNNNRTG	3 cut(s)	96, 387, 606
MspI	CCGG	1 cut(s)	653
MunI	CAATTG	2 cut(s)	483, 697
Mva1269I	GAATGC	2 cut(s)	59, 61
MwoI	GCNNNNNNNGC	1 cut(s)	42
NcoI	CCATGG	1 cut(s)	132
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	2 cut(s)	259, 543
NlaIV	GGNNCC	1 cut(s)	268
NsbI	TGCGCA	1 cut(s)	371
NsiI	ATGCAT	2 cut(s)	61, 93
NspI	RCATGY	1 cut(s)	506
NspV	TTCGAA	1 cut(s)	226
PciI	ACATGT	1 cut(s)	502
PctI	GAATGC	2 cut(s)	59, 61
PdmI	GAANNNNTTC	1 cut(s)	59
PfeI	GAWTC	5 cut(s)	211, 250, 452, 611, 692
PleI	GAGTC	1 cut(s)	624
PpsI	GAGTC	1 cut(s)	624
PpuMI	RGGWCCY	1 cut(s)	335
PscI	ACATGT	1 cut(s)	502
PsiI	TTATAA	1 cut(s)	50
Psp5II	RGGWCCY	1 cut(s)	335
PspFI	CCCAGC	1 cut(s)	488
PspN4I	GGNNCC	1 cut(s)	268
PspPI	GGNCC	3 cut(s)	136, 335, 558
PspPPI	RGGWCCY	1 cut(s)	335
RsaI	GTAC	2 cut(s)	268, 308
RsaNI	GTAC	2 cut(s)	267, 307
RseI	CAYNNNNRTG	3 cut(s)	96, 387, 606
SaqAI	TTAA	1 cut(s)	525
Sau3AI	GATC	2 cut(s)	259, 543
Sau96I	GGNCC	3 cut(s)	136, 335, 558
SchI	GAGTC	1 cut(s)	624
SduI	GDGCHC	1 cut(s)	384
SetI	ASST	9 cut(s)	38, 199, 206, 272, 340, 462, 523, 582, 708
SfaNI	GCATC	2 cut(s)	293, 692
SfuI	TTCGAA	1 cut(s)	226
SinI	GGWCC	2 cut(s)	136, 335
SmiMI	CAYNNNNRTG	3 cut(s)	96, 387, 606
SspMI	CTAG	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	3 cut(s)	311, 347, 403
TaiI	ACGT	2 cut(s)	199, 523
TaqI	TCGA	2 cut(s)	214, 226
TatI	WGTACW	1 cut(s)	306
TfiI	GAWTC	5 cut(s)	211, 250, 452, 611, 692
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TspDTI	ATGAA	3 cut(s)	68, 613, 655
VpaK11BI	GGWCC	2 cut(s)	136, 335
XapI	RAATTY	3 cut(s)	229, 428, 568
XceI	RCATGY	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	59
XspI	CTAG	1 cut(s)	257
Zsp2I	ATGCAT	2 cut(s)	61, 93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.