Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0014704

Physical Location & Seq

Genomic Coordinates Reverse (-)

78042020 .. 78045180

Gene Structure 3161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG490200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2535 bp

ATGCATGTCTCTCATATCCATGCATGGCTAGACGTCTCTCCTCTCCTCGCCTCTCCATCCCTTCTCTCTATCTGGCTAACATCTTTGTTTTATTTTTCTTTTCTAAACGCTTTATTGTTGAGCTACTATAGGATCACAATGAATAGGGCAAACTGGATATGCGAGACCCAGAAAGGCATAAGATCGAAAGGTATCTTTTTGGGTGATAATCCTTTGAAATACCCATCTCCAATACTTCTTCTGCAACTTACTATAGCTGCCTTGGTCACCACTCTCTTCCAATTCATTCTCAACCCTCTCGGAGAAAGTGCTTATATCTCACAAATGCTGGCAGGTATTCTATTGGGACCATCATTCTTAGGAGGAGAAAATGATTTTGCAGAAATAGTTTACCCAGTTAAAAGTTTCTACATCAGCCAAACCTTTGCTTTCTTTGGTTGCATGCTTTTTCTATTCCTAGTGGGTGTTAAAATGGATTTGAGTATAGTCAGACGGTCGGGAAAGAAAGCTGTGGTCATAGGCCTCTCGGCATTTTTCGTCCCTTTGGTTCTAAATGTAGGCTTCGCTCTCGTTCTGCAACGTACGGTCACTATGGAACCCCAGTTGCACAAATCACTTGTAGCCATAGCAGTGTTTCAGTGCCTAAGTAGCTTCCACGTCATCGGTTGTCTCTTGGGCGATTTGAAGCTCCTAAACTCGGAGCTTGGTCGTTTGGCTGTGTCTTCTTCGATGATTAGCGGAGTCATCTCTTGGATTTGGGTCATCCTGGCCTTCACAGTACGGCTAAGCACCATGAAAAAGACCGGAAACTTGCCTTTTATGGGTTTAAGTTTAGCCGCATTGTTTGTTCTAATTATATTCATAATGAGGCCAATAATGCTGTGGATGGTTGCCCAAACAGCTAAAGGCAAACCCATTAAAGAGAGCTACATAGTCTCCATCTTCATCATGGTCATGATTTGTTCCCTTGTCGGTGAGATTGTGGGCCAGCATTTTTTGCTTGGGCCTATGGTTTTGGGCCTCGCCGTGCCAGACGGCCCGCCTTTGGGGTCAGCATTGGTGGAGAAACTTGACTCGTACGTTTCCAACATTCTGTTGCCGAGCTACTTTCTGTTCACTGGTGCAAGAATCAATTTGAGTGAAATCAGAATGAAGACTGTTGGGATTGTGGAGGTGCTGGCTCTCAGTAGCTTTTGTGGTAAGGTATTAGGGACCATGGTGCCTTCACTCTATTGCAAAATGCCTGCTATCGACGCACTTTCATTAGGGCTCATCATGAGTGCCCAAGGCATCACCGACCTTCTTGTCTTGCAACATGGAATGCTACTCTTGCTCATTGACGGAGAATGCTACAGCATCATGATTATGTCATCGGTTTTATTTACTGGAATCATCACCCCCATAGTGAAATTTCTGTACAACCCCTCTAAGAGATACAAGTCCACAAAGCGAAGACGAACCATTGAGTATTCCTTGCCAAACATGGAACTCGGACTTCTTGTCTGCATGTTCCACCAAGACAGCACTCCCTCCATCATAAACCTAATAGAAGTCTTCAATCCAACCCCCAAGAGCCCCATTTGCTTCTGCGTTGTCCACCTCATCCGTCTCTCAGGTCGAACAGCTCCAGTCCTCATAACCCACAGACCCGGGAAAAACACCGCTTTACACTCAAACAACTACTCCGATCACATAATCAATGCCTTCAGATTGTACCAAGAACACAATGCCAGCAGTGTCATAATGAATGCATTCACCGCAATTGCGCCCTATGCCACAATGCACGACGAGGTTTGCACACTTGCTTTTGAAAAAAGGACTTCCATGATAATAATCCCATTTCACAAGTTTTTCAGTGCTATCCAATGTACCGAAGAATTAGCACATCCAATCAGGTCTGTCAACAGAAATATTCTTCAAAATGCTCCGTGCTCCGTTGGGATTCTTGTAGACCGAGGTACGTTGAATAAAAAACCATCCGCTTTACACACTTCTATATCAGGAAGAAGTTTGTACAGTGTTGGGACGATCTTTGTTGAGGGACCTGATGACCGCGAAGCATTGGCCTTAGCGACGCGGATGGCTGGAAACCCCAATGTCAGCCTAACCGTTACCAAATTTACCGATCCCAAGCAAAATAGAACCCAGAAAGAGATCGATTCGGAAGTTATAATGAAGTATAAGACAGCCATTGATGGCAAAAAACAGCACGTCTACAAAGAGGTGCATGTTAAAGATAGCGTCGACATGATCAATGAGATTAGATCTATGGAGGATTTTTTCGACCTAATTCTGGTGGGGAGAAGACATGATAGTGATTCGCCGTTGTTCATGGGACTTACCGAATGGAATGAGTTTCCGGAACTAGGGTTCCTCGGAGACATGTTAGCATCTTTTGATGCAAATTGCGAGGTGTCAGTGCTGGTGGTGCAGCAACAATCGTTTGGATGTGCTGAAAAAGAGAAGACTGATATCTTTCAATGCCATGTGAAGGATTCGTTTTCTGTTGTGGATATACCTCATAATCGACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

844

Amino Acids

93.72

Weight (kDa)

8.59

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	87 - 469	5.7e-35	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	530 - 654	1.6e-16	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	673 - 813	8.6e-12	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g39830 FvH4_3g39830
malus_domestica	MD03G1057100.v1.1 MD11G1059100.v1.1
prunus_persica	Prupe.6G047700_v2.0.a1
pyrus_communis	pycom11g04890
rosa_chinensis	RchiOBHm_Chr5g0071771
rosa_laevigata	RLG00000036244
rosa_multiflora	Rmu_sc0001113.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009450
rosa_rugosa	Rorug05G0414400 Rorug05G0414500
rosa_samantha	Rh5AG470500 Rh5BG490200 Rh5CG514200 Rh5DG500900
rosa_wichuraiana	Rw5G043720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2171
AasI	GACNNNNNNGTC	1 cut(s)	1304
AatII	GACGTC	1 cut(s)	36
Acc36I	ACCTGC	1 cut(s)	323
AccB1I	GGYRCC	1 cut(s)	1219
AccI	GTMKAC	3 cut(s)	1950, 2214, 2244
AccII	CGCG	2 cut(s)	2055, 2077
AccIII	TCCGGA	1 cut(s)	2359
AciI	CCGC	8 cut(s)	738, 837, 1040, 1662, 1758, 1980, 2053, 2077
AclWI	GGATC	2 cut(s)	140, 2120
AcsI	RAATTY	2 cut(s)	1409, 2117
AcuI	CTGAAG	1 cut(s)	1690
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	8 cut(s)	583, 780, 1079, 1418, 1715, 1870, 1960, 2015
AfiI	CCNNNNNNNGG	7 cut(s)	697, 821, 1045, 1046, 2293, 2366, 2491
AflIII	ACRYGT	1 cut(s)	2382
AgsI	TTSAA	7 cut(s)	217, 685, 1558, 1811, 1919, 1966, 2480
AhdI	GACNNNNNGTC	1 cut(s)	1499
AjiI	CACGTC	2 cut(s)	658, 2212
AjnI	CCWGG	1 cut(s)	765
AloI	GAACNNNNNNTCC	4 cut(s)	2354, 2355, 2386, 2387
Alw21I	GWGCWC	1 cut(s)	1934
Alw26I	GTCTC	7 cut(s)	13, 40, 158, 674, 940, 1613, 2373
AlwI	GGATC	2 cut(s)	140, 2120
Ama87I	CYCGRG	1 cut(s)	1649
Aor13HI	TCCGGA	1 cut(s)	2359
AoxI	GGCC	8 cut(s)	520, 768, 869, 985, 1004, 1018, 1036, 2064
ApeKI	GCWGC	2 cut(s)	257, 2431
ApoI	RAATTY	2 cut(s)	1409, 2117
Asp700I	GAANNNNTTC	1 cut(s)	1751
AspLEI	GCGC	1 cut(s)	1768
AspS9I	GGNCC	7 cut(s)	347, 985, 1004, 1018, 1037, 1212, 2042
AsuC2I	CCSGG	2 cut(s)	1650, 1651
AsuHPI	GGTGA	6 cut(s)	215, 259, 986, 1285, 1387, 1747
AvaI	CYCGRG	1 cut(s)	1649
AvaII	GGWCC	3 cut(s)	347, 1212, 2042
BaeGI	GKGCMC	1 cut(s)	1285
BanI	GGYRCC	1 cut(s)	1219
BanII	GRGCYC	2 cut(s)	1272, 1577
BbsI	GAAGAC	6 cut(s)	714, 1160, 1459, 1546, 2311, 2471
Bbv12I	GWGCWC	1 cut(s)	1934
BbvI	GCAGC	2 cut(s)	244, 2443
BccI	CCATC	9 cut(s)	64, 232, 358, 880, 947, 1541, 1984, 2074, 2189
BceAI	ACGGC	4 cut(s)	797, 1010, 1051, 2308
BciT130I	CCWGG	1 cut(s)	767
BclI	TGATCA	1 cut(s)	2250
BcnI	CCSGG	2 cut(s)	1650, 1651
BcoDI	GTCTC	7 cut(s)	13, 40, 158, 674, 940, 1613, 2373
BfaI	CTAG	3 cut(s)	29, 458, 2366
BfmI	CTRYAG	3 cut(s)	127, 252, 1351
BfuAI	ACCTGC	1 cut(s)	323
BglII	AGATCT	1 cut(s)	2264
BisI	GCNGC	3 cut(s)	258, 837, 2432
BlpI	GCTNAGC	1 cut(s)	785
BlsI	GCNGC	3 cut(s)	259, 838, 2433
Bme1390I	CCNGG	3 cut(s)	767, 1650, 1651
Bme18I	GGWCC	3 cut(s)	347, 1212, 2042
BmeRI	GACNNNNNGTC	1 cut(s)	1499
BmeT110I	CYCGRG	1 cut(s)	1649
BmgBI	CACGTC	2 cut(s)	658, 2212
BmgT120I	GGNCC	7 cut(s)	347, 985, 1004, 1018, 1037, 1212, 2042
BmiI	GGNNCC	6 cut(s)	348, 597, 1213, 1221, 2043, 2372
BmrFI	CCNGG	3 cut(s)	767, 1650, 1651
BmrI	ACTGGG	2 cut(s)	389, 595
BmsI	GCATC	4 cut(s)	1299, 1365, 2389, 2399
BmuI	ACTGGG	2 cut(s)	389, 595
BpiI	GAAGAC	6 cut(s)	714, 1160, 1459, 1546, 2311, 2471
BpmI	CTGGAG	1 cut(s)	1611
Bpu10I	CCTNAGC	1 cut(s)	2068
Bpu1102I	GCTNAGC	1 cut(s)	785
BpuMI	CCSGG	2 cut(s)	1650, 1651
Bsa29I	ATCGAT	1 cut(s)	2157
BsaBI	GATNNNNATC	1 cut(s)	1832
BsaHI	GRCGYC	1 cut(s)	33
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	6 cut(s)	261, 1215, 1285, 1649, 1954, 2374
BsaWI	WCCGGW	2 cut(s)	803, 2359
BsaXI	ACNNNNNCTCC	4 cut(s)	920, 950, 1667, 1697
Bsc4I	CCNNNNNNNGG	7 cut(s)	697, 821, 1045, 1046, 2293, 2366, 2491
Bse1I	ACTGG	6 cut(s)	158, 395, 601, 1123, 1390, 1628
Bse8I	GATNNNNATC	1 cut(s)	1832
BseAI	TCCGGA	1 cut(s)	2359
BseBI	CCWGG	1 cut(s)	767
BseCI	ATCGAT	1 cut(s)	2157
BseDI	CCNNGG	6 cut(s)	261, 1215, 1285, 1649, 1954, 2374
BseGI	GGATG	8 cut(s)	56, 762, 891, 1602, 1885, 1976, 2085, 2453
BseJI	GATNNNNATC	1 cut(s)	1832
BseLI	CCNNNNNNNGG	7 cut(s)	697, 821, 1045, 1046, 2293, 2366, 2491
BseMII	CTCAG	2 cut(s)	1198, 1626
BseNI	ACTGG	6 cut(s)	158, 395, 601, 1123, 1390, 1628
BseRI	GAGGAG	3 cut(s)	30, 35, 378
BseSI	GKGCMC	1 cut(s)	1285
BseXI	GCAGC	2 cut(s)	244, 2443
BsgI	GTGCAG	1 cut(s)	2450
Bsh1236I	CGCG	2 cut(s)	2055, 2077
Bsh1285I	CGRYCG	1 cut(s)	497
BshFI	GGCC	8 cut(s)	522, 770, 871, 987, 1006, 1020, 1038, 2066
BshNI	GGYRCC	1 cut(s)	1219
BshVI	ATCGAT	1 cut(s)	2157
BsiEI	CGRYCG	1 cut(s)	497
BsiHKAI	GWGCWC	1 cut(s)	1934
BsiHKCI	CYCGRG	1 cut(s)	1649
BsiSI	CCGG	3 cut(s)	804, 1650, 2360
BsiWI	CGTACG	2 cut(s)	581, 1077
BslFI	GGGAC	6 cut(s)	360, 524, 1225, 2038, 2055, 2349
BslI	CCNNNNNNNGG	7 cut(s)	697, 821, 1045, 1046, 2293, 2366, 2491
BsmAI	GTCTC	7 cut(s)	13, 40, 158, 674, 940, 1613, 2373
BsmBI	CGTCTC	2 cut(s)	40, 1613
BsmFI	GGGAC	6 cut(s)	360, 524, 1225, 2038, 2055, 2349
BsmI	GAATGC	4 cut(s)	1326, 1352, 1751, 1753
BsnI	GGCC	8 cut(s)	522, 770, 871, 987, 1006, 1020, 1038, 2066
Bso31I	GGTCTC	1 cut(s)	158
BsoBI	CYCGRG	1 cut(s)	1649
Bsp1286I	GDGCHC	4 cut(s)	1272, 1285, 1577, 1934
Bsp13I	TCCGGA	1 cut(s)	2359
Bsp1407I	TGTACA	2 cut(s)	1416, 2013
Bsp143I	GATC	8 cut(s)	132, 182, 1687, 2028, 2125, 2154, 2250, 2264
Bsp1720I	GCTNAGC	1 cut(s)	785
Bsp19I	CCATGG	1 cut(s)	1215
BspACI	CCGC	8 cut(s)	738, 837, 1040, 1662, 1758, 1980, 2053, 2077
BspANI	GGCC	8 cut(s)	522, 770, 871, 987, 1006, 1020, 1038, 2066
BspCNI	CTCAG	2 cut(s)	1197, 1625
BspDI	ATCGAT	1 cut(s)	2157
BspEI	TCCGGA	1 cut(s)	2359
BspFNI	CGCG	2 cut(s)	2055, 2077
BspHI	TCATGA	3 cut(s)	954, 1275, 1359
BspLI	GGNNCC	6 cut(s)	348, 597, 1213, 1221, 2043, 2372
BspMI	ACCTGC	1 cut(s)	323
BspPI	GGATC	2 cut(s)	140, 2120
BspT107I	GGYRCC	1 cut(s)	1219
BspTNI	GGTCTC	1 cut(s)	158
BsrGI	TGTACA	2 cut(s)	1416, 2013
BsrI	ACTGG	6 cut(s)	158, 395, 601, 1123, 1390, 1628
BssECI	CCNNGG	6 cut(s)	261, 1215, 1285, 1649, 1954, 2374
BssMI	GATC	8 cut(s)	132, 182, 1687, 2028, 2125, 2154, 2250, 2264
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	3 cut(s)	261, 1215, 1285
Bst2UI	CCWGG	1 cut(s)	767
Bst4CI	ACNGT	6 cut(s)	495, 586, 778, 1159, 2018, 2110
Bst6I	CTCTTC	1 cut(s)	281
BstACI	GRCGYC	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	997
BstAUI	TGTACA	2 cut(s)	1416, 2013
BstC8I	GCNNGC	7 cut(s)	330, 443, 989, 1040, 1179, 1245, 1732
BstDEI	CTNAG	7 cut(s)	358, 644, 785, 1184, 1428, 1612, 2068
BstDSI	CCRYGG	1 cut(s)	1215
BstEII	GGTNACC	1 cut(s)	265
BstF5I	GGATG	8 cut(s)	56, 762, 891, 1602, 1885, 1976, 2085, 2453
BstFNI	CGCG	2 cut(s)	2055, 2077
BstHHI	GCGC	1 cut(s)	1768
BstKTI	GATC	8 cut(s)	135, 185, 1690, 2031, 2128, 2157, 2253, 2267
BstMAI	GTCTC	7 cut(s)	13, 40, 158, 674, 940, 1613, 2373
BstMBI	GATC	8 cut(s)	132, 182, 1687, 2028, 2125, 2154, 2250, 2264
BstMCI	CGRYCG	1 cut(s)	497
BstNI	CCWGG	1 cut(s)	767
BstNSI	RCATGY	5 cut(s)	8, 445, 1510, 2231, 2386
BstPI	GGTNACC	1 cut(s)	265
BstSCI	CCNGG	3 cut(s)	765, 1648, 1649
BstSFI	CTRYAG	3 cut(s)	127, 252, 1351
BstSLI	GKGCMC	1 cut(s)	1285
BstUI	CGCG	2 cut(s)	2055, 2077
BstV1I	GCAGC	2 cut(s)	244, 2443
BstV2I	GAAGAC	6 cut(s)	714, 1160, 1459, 1546, 2311, 2471
BstX2I	RGATCY	1 cut(s)	2264
BstYI	RGATCY	1 cut(s)	2264
Bsu15I	ATCGAT	1 cut(s)	2157
BsuRI	GGCC	8 cut(s)	522, 770, 871, 987, 1006, 1020, 1038, 2066
BsuTUI	ATCGAT	1 cut(s)	2157
BtgI	CCRYGG	1 cut(s)	1215
BtrI	CACGTC	2 cut(s)	658, 2212
BtsCI	GGATG	8 cut(s)	56, 762, 891, 1602, 1885, 1976, 2085, 2453
BtsI	GCAGTG	2 cut(s)	636, 1741
BtsIMutI	CAGTG	7 cut(s)	636, 644, 1116, 1741, 1861, 2023, 2424
BveI	ACCTGC	1 cut(s)	323
Cac8I	GCNNGC	7 cut(s)	330, 443, 989, 1040, 1179, 1245, 1732
CciI	TCATGA	3 cut(s)	954, 1275, 1359
CfoI	GCGC	1 cut(s)	1768
Cfr13I	GGNCC	7 cut(s)	347, 985, 1004, 1018, 1037, 1212, 2042
Cfr9I	CCCGGG	1 cut(s)	1649
ClaI	ATCGAT	1 cut(s)	2157
CseI	GACGC	3 cut(s)	1262, 2083, 2230
Csp6I	GTAC	8 cut(s)	582, 779, 1078, 1417, 1714, 1869, 1959, 2014
CviQI	GTAC	8 cut(s)	582, 779, 1078, 1417, 1714, 1869, 1959, 2014
DdeI	CTNAG	7 cut(s)	358, 644, 785, 1184, 1428, 1612, 2068
DpnI	GATC	8 cut(s)	134, 184, 1689, 2030, 2127, 2156, 2252, 2266
DpnII	GATC	8 cut(s)	132, 182, 1687, 2028, 2125, 2154, 2250, 2264
DrdI	GACNNNNNNGTC	1 cut(s)	1304
DriI	GACNNNNNGTC	1 cut(s)	1499
DseDI	GACNNNNNNGTC	1 cut(s)	1304
Eam1104I	CTCTTC	1 cut(s)	281
Eam1105I	GACNNNNNGTC	1 cut(s)	1499
EarI	CTCTTC	1 cut(s)	281
Eco130I	CCWWGG	3 cut(s)	261, 1215, 1285
Eco147I	AGGCCT	1 cut(s)	522
Eco24I	GRGCYC	2 cut(s)	1272, 1577
Eco31I	GGTCTC	1 cut(s)	158
Eco32I	GATATC	1 cut(s)	2473
Eco47I	GGWCC	3 cut(s)	347, 1212, 2042
Eco57I	CTGAAG	1 cut(s)	1690
Eco88I	CYCGRG	1 cut(s)	1649
Eco91I	GGTNACC	1 cut(s)	265
EcoO109I	RGGNCCY	1 cut(s)	2042
EcoO65I	GGTNACC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	765
EcoRV	GATATC	1 cut(s)	2473
EcoT14I	CCWWGG	3 cut(s)	261, 1215, 1285
EcoT22I	ATGCAT	3 cut(s)	6, 25, 1753
EcoT38I	GRGCYC	2 cut(s)	1272, 1577
ErhI	CCWWGG	3 cut(s)	261, 1215, 1285
Esp3I	CGTCTC	2 cut(s)	40, 1613
FaqI	GGGAC	6 cut(s)	360, 524, 1225, 2038, 2055, 2349
FauI	CCCGC	1 cut(s)	1047
FbaI	TGATCA	1 cut(s)	2250
FblI	GTMKAC	3 cut(s)	1950, 2214, 2244
Fnu4HI	GCNGC	3 cut(s)	258, 837, 2432
FokI	GGATG	8 cut(s)	43, 749, 898, 1589, 1872, 1963, 2092, 2460
FriOI	GRGCYC	2 cut(s)	1272, 1577
Fsp4HI	GCNGC	3 cut(s)	258, 837, 2432
FspBI	CTAG	3 cut(s)	29, 458, 2366
GlaI	GCGC	1 cut(s)	1767
GluI	GCNGC	3 cut(s)	258, 837, 2432
GsuI	CTGGAG	1 cut(s)	1611
HaeIII	GGCC	8 cut(s)	522, 770, 871, 987, 1006, 1020, 1038, 2066
HapII	CCGG	3 cut(s)	804, 1650, 2360
HgaI	GACGC	3 cut(s)	1262, 2083, 2230
HhaI	GCGC	1 cut(s)	1768
Hin1I	GRCGYC	1 cut(s)	33
Hin6I	GCGC	1 cut(s)	1766
HinP1I	GCGC	1 cut(s)	1766
HincII	GTYRAC	2 cut(s)	1903, 2245
HindII	GTYRAC	2 cut(s)	1903, 2245
HinfI	GANTC	8 cut(s)	741, 1073, 1128, 1389, 1942, 2159, 2318, 2495
HpaII	CCGG	3 cut(s)	804, 1650, 2360
HphI	GGTGA	6 cut(s)	215, 259, 986, 1285, 1387, 1747
Hpy166II	GTNNAC	8 cut(s)	391, 1116, 1443, 1597, 1903, 1951, 2215, 2245
Hpy188I	TCNGA	9 cut(s)	302, 491, 700, 1148, 1493, 1687, 1709, 2164, 2378
Hpy188III	TCNNGA	6 cut(s)	498, 955, 1276, 1360, 2001, 2360
Hpy8I	GTNNAC	8 cut(s)	391, 1116, 1443, 1597, 1903, 1951, 2215, 2245
Hpy99I	CGWCG	4 cut(s)	1256, 1790, 2077, 2246
HpyAV	CCTTC	6 cut(s)	71, 781, 1233, 1310, 1714, 2485
HpyCH4III	ACNGT	6 cut(s)	495, 586, 778, 1159, 2018, 2110
HpyCH4IV	ACGT	6 cut(s)	33, 580, 657, 1080, 1961, 2211
HpyF3I	CTNAG	7 cut(s)	358, 644, 785, 1184, 1428, 1612, 2068
HpySE526I	ACGT	6 cut(s)	33, 580, 657, 1080, 1961, 2211
Hsp92I	GRCGYC	1 cut(s)	33
HspAI	GCGC	1 cut(s)	1766
Kpn2I	TCCGGA	1 cut(s)	2359
Ksp22I	TGATCA	1 cut(s)	2250
Kzo9I	GATC	8 cut(s)	132, 182, 1687, 2028, 2125, 2154, 2250, 2264
LmnI	GCTCC	5 cut(s)	693, 700, 1630, 1930, 1937
Lsp1109I	GCAGC	2 cut(s)	244, 2443
LweI	GCATC	4 cut(s)	1299, 1365, 2389, 2399
MaeI	CTAG	3 cut(s)	29, 458, 2366
MaeII	ACGT	6 cut(s)	33, 580, 657, 1080, 1961, 2211
MaeIII	GTNAC	3 cut(s)	265, 586, 2110
MalI	GATC	8 cut(s)	134, 184, 1689, 2030, 2127, 2156, 2252, 2266
MboI	GATC	8 cut(s)	132, 182, 1687, 2028, 2125, 2154, 2250, 2264
MfeI	CAATTG	1 cut(s)	1761
MflI	RGATCY	1 cut(s)	2264
MhlI	GDGCHC	4 cut(s)	1272, 1285, 1577, 1934
MluCI	AATT	9 cut(s)	281, 852, 1132, 1409, 1761, 1877, 2117, 2289, 2404
MlyI	GAGTC	2 cut(s)	750, 1067
MmeI	TCCRAC	2 cut(s)	1110, 1586
Mph1103I	ATGCAT	3 cut(s)	6, 25, 1753
MroI	TCCGGA	1 cut(s)	2359
MroXI	GAANNNNTTC	1 cut(s)	1751
MseI	TTAA	6 cut(s)	399, 468, 827, 918, 2232, 2533
MslI	CAYNNNNRTG	5 cut(s)	18, 629, 953, 1364, 2313
MspI	CCGG	3 cut(s)	804, 1650, 2360
MspR9I	CCNGG	3 cut(s)	767, 1650, 1651
MunI	CAATTG	1 cut(s)	1761
Mva1269I	GAATGC	4 cut(s)	1326, 1352, 1751, 1753
MvaI	CCWGG	1 cut(s)	767
MvnI	CGCG	2 cut(s)	2055, 2077
NciI	CCSGG	2 cut(s)	1650, 1651
NcoI	CCATGG	1 cut(s)	1215
NdeII	GATC	8 cut(s)	132, 182, 1687, 2028, 2125, 2154, 2250, 2264
NlaIV	GGNNCC	6 cut(s)	348, 597, 1213, 1221, 2043, 2372
NmeAIII	GCCGAG	2 cut(s)	506, 1125
NmuCI	GTSAC	2 cut(s)	265, 586
NsiI	ATGCAT	3 cut(s)	6, 25, 1753
NspI	RCATGY	5 cut(s)	8, 445, 1510, 2231, 2386
PaeI	GCATGC	1 cut(s)	445
PagI	TCATGA	3 cut(s)	954, 1275, 1359
PceI	AGGCCT	1 cut(s)	522
PciI	ACATGT	1 cut(s)	2382
PctI	GAATGC	4 cut(s)	1326, 1352, 1751, 1753
PdmI	GAANNNNTTC	1 cut(s)	1751
PfeI	GAWTC	6 cut(s)	1128, 1389, 1942, 2159, 2318, 2495
Pfl23II	CGTACG	2 cut(s)	581, 1077
PkrI	GCNGC	3 cut(s)	259, 838, 2433
PleI	GAGTC	2 cut(s)	749, 1067
PpsI	GAGTC	2 cut(s)	749, 1067
PpuMI	RGGWCCY	1 cut(s)	2042
PscI	ACATGT	1 cut(s)	2382
PsiI	TTATAA	1 cut(s)	2171
Psp5II	RGGWCCY	1 cut(s)	2042
Psp6I	CCWGG	1 cut(s)	765
PspEI	GGTNACC	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	765
PspLI	CGTACG	2 cut(s)	581, 1077
PspN4I	GGNNCC	6 cut(s)	348, 597, 1213, 1221, 2043, 2372
PspPI	GGNCC	7 cut(s)	347, 985, 1004, 1018, 1037, 1212, 2042
PspPPI	RGGWCCY	1 cut(s)	2042
PsuI	RGATCY	1 cut(s)	2264
RsaI	GTAC	8 cut(s)	583, 780, 1079, 1418, 1715, 1870, 1960, 2015
RsaNI	GTAC	8 cut(s)	582, 779, 1078, 1417, 1714, 1869, 1959, 2014
RseI	CAYNNNNRTG	5 cut(s)	18, 629, 953, 1364, 2313
SalI	GTCGAC	1 cut(s)	2243
SaqAI	TTAA	6 cut(s)	399, 468, 827, 918, 2232, 2533
SatI	GCNGC	3 cut(s)	258, 837, 2432
Sau3AI	GATC	8 cut(s)	132, 182, 1687, 2028, 2125, 2154, 2250, 2264
Sau96I	GGNCC	7 cut(s)	347, 985, 1004, 1018, 1037, 1212, 2042
SchI	GAGTC	2 cut(s)	750, 1067
ScrFI	CCNGG	3 cut(s)	767, 1650, 1651
SduI	GDGCHC	4 cut(s)	1272, 1285, 1577, 1934
SfaNI	GCATC	4 cut(s)	1299, 1365, 2389, 2399
SfcI	CTRYAG	3 cut(s)	127, 252, 1351
SinI	GGWCC	3 cut(s)	347, 1212, 2042
SmaI	CCCGGG	1 cut(s)	1651
SmiMI	CAYNNNNRTG	5 cut(s)	18, 629, 953, 1364, 2313
SphI	GCATGC	1 cut(s)	445
Sse9I	AATT	9 cut(s)	281, 852, 1132, 1409, 1761, 1877, 2117, 2289, 2404
SseBI	AGGCCT	1 cut(s)	522
SsiI	CCGC	8 cut(s)	738, 837, 1040, 1662, 1758, 1980, 2053, 2077
SspI	AATATT	1 cut(s)	1912
SspMI	CTAG	3 cut(s)	29, 458, 2366
StuI	AGGCCT	1 cut(s)	522
StyD4I	CCNGG	3 cut(s)	765, 1648, 1649
StyI	CCWWGG	3 cut(s)	261, 1215, 1285
TaaI	ACNGT	6 cut(s)	495, 586, 778, 1159, 2018, 2110
TaiI	ACGT	6 cut(s)	36, 583, 660, 1083, 1964, 2214
TaqI	TCGA	8 cut(s)	185, 728, 1251, 1618, 2157, 2244, 2283, 2527
TaqII	GACCGA	1 cut(s)	1968
TasI	AATT	9 cut(s)	281, 852, 1132, 1409, 1761, 1877, 2117, 2289, 2404
TatI	WGTACW	2 cut(s)	1416, 2013
TauI	GCSGC	1 cut(s)	839
TfiI	GAWTC	6 cut(s)	1128, 1389, 1942, 2159, 2318, 2495
Tru1I	TTAA	6 cut(s)	399, 468, 827, 918, 2232, 2533
Tru9I	TTAA	6 cut(s)	399, 468, 827, 918, 2232, 2533
TscAI	CASTG	7 cut(s)	636, 644, 1123, 1741, 1861, 2023, 2424
TseFI	GTSAC	2 cut(s)	265, 586
TseI	GCWGC	2 cut(s)	257, 2431
Tsp45I	GTSAC	2 cut(s)	265, 586
TspGWI	ACGGA	4 cut(s)	1356, 1595, 1917, 1924
TspMI	CCCGGG	1 cut(s)	1649
TspRI	CASTG	7 cut(s)	636, 644, 1123, 1741, 1861, 2023, 2424
VpaK11BI	GGWCC	3 cut(s)	347, 1212, 2042
XapI	RAATTY	2 cut(s)	1409, 2117
XceI	RCATGY	5 cut(s)	8, 445, 1510, 2231, 2386
XcmI	CCANNNNNNNNNTGG	2 cut(s)	879, 946
XmaI	CCCGGG	1 cut(s)	1649
XmiI	GTMKAC	3 cut(s)	1950, 2214, 2244
XmnI	GAANNNNTTC	1 cut(s)	1751
XspI	CTAG	3 cut(s)	29, 458, 2366
ZraI	GACGTC	1 cut(s)	34
Zsp2I	ATGCAT	3 cut(s)	6, 25, 1753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.