Rh5CG514200

Cation H( ) antiporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0014704
Physical Location & Seq
Reverse (-)
71748466 .. 71752180
3715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG514200.1

Sequence Viewer

Length: 2094 bp
ATGCTTTTTCTATTCCTAGTGGGTGTTAAAATGGATTTGAGTATAGTCAGACGGTCGGGAAAGAAAGCTGTGGTCATAGGCCTCTCGGCATTTTTCGTCCCTTTGGTTCTAAATGTAGGCTTCGCTCTCGTTCTGCAACGTACGGTCACTATGGAACCCCAGTTGCACAAATCACTTGTAGCCATAGCAGTGTTTCAGTGCCTAAGTAGCTTCCACGTCATCGGTTGTCTCTTGGGCGATTTGAAGCTCCTAAACTCGGAGCTTGGTCGTTTGGCTGTGTCTTCTTCGATGATTAGCGGAGTCATCTCTTGGATTTGGGTCATCCTGGCCTTCACAGTACGGCTAAGCACCATGAAAAAGACCGGAAACTTGCCTTTTATGGGTTTAAGTTTAGCCGCATTGTTTGTTCTAATTATATTCATAATGAGGCCAATAATGCTGTGGATGGTTGCCCAAACAGCTAAAGGCAAACCCATTAAAGAGAGCTACATAGTCTCCATCTTCATCATGGTCATGATTTGTTCCCTTGTCGGTGAGATTGTGGGCCAGCATTTTTTGCTTGGGCCTATGGTTTTGGGCCTCGCCGTGCCAGACGGCCCGCCTTTGGGGTCAGCATTGGTGGAGAAACTTGACTCGTACGTTTCCAACATTCTGTTGCCGAGCTACTTTCTGTTCACTGGTGCAAGAATCAATTTGAGTGAAATCAGAATGAAGACTGTTGGGATTGTGGAGGTGCTGGCTCTCAGTAGCTTTTGTGGTAAGGTATTAGGGACCATGGTGCCTTCACTCTATTGCAAAATGCCTGCTATCGACGCACTTTCATTAGGGCTCATCATGAGTGCCCAAGGCATCACCGACCTTCTTGTCTTGCAACATGGAATGCTACTCTTGCTCATTGACGGAGAATGCTACAGCATCATGATTATGTCATCGGTTTTATTTACTGGAATCATCACCCCCATAGTGAAATTTCTGTACAACCCCTCTAAGAGATACAAGTCCACAAAGCGAAGACGAACCATTGAGTATTCCTTGCCAAACATGGAACTCGGACTTCTTGTCTGCATGTTCCACCAAGACAGCACTCCCTCCATCATAAACCTAATAGAAGTCTTCAATCCAACCCCCAAGAGCCCCATTTGCTTCTGCGTTGTCCACCTCATCCGTCTCTCAGGTCGAACAGCTCCAGTCCTCATAACCCACAGACCCGGGAAAAACACCGCTTTACACTCAAACAACTACTCCGATCACATAATCAATGCCTTCAGATTGTACCAAGAACACAATGCCAGCAGTGTCATAATGAATGCATTCACCGCAATTGCGCCCTATGCCACAATGCACGACGAGGTTTGCACACTTGCTTTTGAAAAAAGGACTTCCATGATAATAATCCCATTTCACAAGTTTTTCAGTGCTATCCAATGTACCGAAGAATTAGCACATCCAATCAGGTCTGTCAACAGAAATATTCTTCAAAATGCTCCGTGCTCCGTTGGGATTCTTGTAGACCGAGGTACGTTGAATAAAAAACCATCCGCTTTACACACTTCTATATCAGGAAGAAGTTTGTACAGTGTTGGGACGATCTTTGTTGAGGGACCTGATGACCGCGAAGCATTGGCCTTAGCGACGCGGATGGCTGGAAACCCCAATGTCAGCCTAACCGTTACCAAATTTACCGATCCCAAGCAAAATAGAACCCAGAAAGAGATCGATTCGGAAGTTATAATGAAGTATAAGACAGCCATTGATGGCAAAAAACAGCACGTCTACAAAGAGGTGCATGTTAAAGATAGCGTCGACATGATCAATGAGATTAGATCTATGGAGGATTTTTTCGACCTAATTCTGGTGGGGAGAAGACATGATAGTGATTCGCCGTTGTTCATGGGACTTACCGAATGGAATGAGTTTCCGGAACTAGGGTTCCTCGGAGACATGTTAGCATCTTTTGATGCAAATTGCGAGGTGTCAGTGCTGGTGGTGCAGCAACAATCGTTTGGATGTGCTGAAAAAGAGAAGACTGATATCTTTCAATGCCATGTGAAGGATTCGTTTTCTGTTGTGGATATACCTCATAATCGACATTAA

Protein Analysis

697

Amino Acids

77.26

Weight (kDa)

8.67

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 2 - 322 1.4e-27 Sodium/hydrogen exchanger, transmembrane
CHX17_2nd PF23256 383 - 507 1.2e-16 Plant cation/H(+) antiporter domain
CHX17_C PF23259 526 - 666 6.4e-12 Plant cation/H(+) antiporter, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014704)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g39830 FvH4_3g39830
malus_domestica MD03G1057100.v1.1 MD11G1059100.v1.1
prunus_persica Prupe.6G047700_v2.0.a1
pyrus_communis pycom11g04890
rosa_chinensis RchiOBHm_Chr5g0071771
rosa_laevigata RLG00000036244
rosa_multiflora Rmu_sc0001113.1_g000001
rosa_roxburghii Rroxscaffold_1G00009450
rosa_rugosa Rorug05G0414400 Rorug05G0414500
rosa_samantha Rh5AG470500 Rh5BG490200 Rh5CG514200 Rh5DG500900
rosa_wichuraiana Rw5G043720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1730
AasI GACNNNNNNGTC 1 cut(s) 863
AccB1I GGYRCC 1 cut(s) 778
AccI GTMKAC 3 cut(s) 1509, 1773, 1803
AccII CGCG 2 cut(s) 1614, 1636
AccIII TCCGGA 1 cut(s) 1918
AciI CCGC 8 cut(s) 297, 396, 599, 1221, 1317, 1539, 1612, 1636
AclWI GGATC 1 cut(s) 1679
AcsI RAATTY 2 cut(s) 968, 1676
AcuI CTGAAG 1 cut(s) 1249
AfaI GTAC 8 cut(s) 142, 339, 638, 977, 1274, 1429, 1519, 1574
AfiI CCNNNNNNNGG 7 cut(s) 256, 380, 604, 605, 1852, 1925, 2050
AflIII ACRYGT 1 cut(s) 1941
AgsI TTSAA 6 cut(s) 244, 1117, 1370, 1478, 1525, 2039
AhdI GACNNNNNGTC 1 cut(s) 1058
AjiI CACGTC 2 cut(s) 217, 1771
AjnI CCWGG 1 cut(s) 324
AloI GAACNNNNNNTCC 4 cut(s) 1913, 1914, 1945, 1946
AluBI AGCT 9 cut(s) 68, 210, 247, 262, 461, 486, 663, 750, 1184
AluI AGCT 9 cut(s) 68, 210, 247, 262, 461, 486, 663, 750, 1184
Alw21I GWGCWC 1 cut(s) 1493
Alw26I GTCTC 4 cut(s) 233, 499, 1172, 1932
AlwI GGATC 1 cut(s) 1679
Ama87I CYCGRG 1 cut(s) 1208
Aor13HI TCCGGA 1 cut(s) 1918
AoxI GGCC 8 cut(s) 79, 327, 428, 544, 563, 577, 595, 1623
ApeKI GCWGC 1 cut(s) 1990
ApoI RAATTY 2 cut(s) 968, 1676
Asp700I GAANNNNTTC 1 cut(s) 1310
AspLEI GCGC 1 cut(s) 1327
AspS9I GGNCC 6 cut(s) 544, 563, 577, 596, 771, 1601
AsuC2I CCSGG 2 cut(s) 1209, 1210
AsuHPI GGTGA 4 cut(s) 545, 844, 946, 1306
AvaI CYCGRG 1 cut(s) 1208
AvaII GGWCC 2 cut(s) 771, 1601
BaeGI GKGCMC 1 cut(s) 844
BanI GGYRCC 1 cut(s) 778
BanII GRGCYC 2 cut(s) 831, 1136
BbsI GAAGAC 6 cut(s) 273, 719, 1018, 1105, 1870, 2030
Bbv12I GWGCWC 1 cut(s) 1493
BbvI GCAGC 1 cut(s) 2002
BccI CCATC 6 cut(s) 439, 506, 1100, 1543, 1633, 1748
BceAI ACGGC 4 cut(s) 356, 569, 610, 1867
BciT130I CCWGG 1 cut(s) 326
BclI TGATCA 1 cut(s) 1809
BcnI CCSGG 2 cut(s) 1209, 1210
BcoDI GTCTC 4 cut(s) 233, 499, 1172, 1932
BfaI CTAG 2 cut(s) 17, 1925
BfmI CTRYAG 1 cut(s) 910
BglII AGATCT 1 cut(s) 1823
BisI GCNGC 2 cut(s) 396, 1991
BlpI GCTNAGC 1 cut(s) 344
BlsI GCNGC 2 cut(s) 397, 1992
Bme1390I CCNGG 3 cut(s) 326, 1209, 1210
Bme18I GGWCC 2 cut(s) 771, 1601
BmeRI GACNNNNNGTC 1 cut(s) 1058
BmeT110I CYCGRG 1 cut(s) 1208
BmgBI CACGTC 2 cut(s) 217, 1771
BmgT120I GGNCC 6 cut(s) 544, 563, 577, 596, 771, 1601
BmiI GGNNCC 5 cut(s) 156, 772, 780, 1602, 1931
BmrFI CCNGG 3 cut(s) 326, 1209, 1210
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 4 cut(s) 858, 924, 1948, 1958
BmuI ACTGGG 1 cut(s) 154
BpiI GAAGAC 6 cut(s) 273, 719, 1018, 1105, 1870, 2030
BpmI CTGGAG 1 cut(s) 1170
Bpu10I CCTNAGC 1 cut(s) 1627
Bpu1102I GCTNAGC 1 cut(s) 344
BpuMI CCSGG 2 cut(s) 1209, 1210
Bsa29I ATCGAT 1 cut(s) 1716
BsaBI GATNNNNATC 1 cut(s) 1391
BsaJI CCNNGG 5 cut(s) 774, 844, 1208, 1513, 1933
BsaWI WCCGGW 2 cut(s) 362, 1918
BsaXI ACNNNNNCTCC 4 cut(s) 479, 509, 1226, 1256
Bsc4I CCNNNNNNNGG 7 cut(s) 256, 380, 604, 605, 1852, 1925, 2050
Bse1I ACTGG 4 cut(s) 160, 682, 949, 1187
Bse8I GATNNNNATC 1 cut(s) 1391
BseAI TCCGGA 1 cut(s) 1918
BseBI CCWGG 1 cut(s) 326
BseCI ATCGAT 1 cut(s) 1716
BseDI CCNNGG 5 cut(s) 774, 844, 1208, 1513, 1933
BseGI GGATG 7 cut(s) 321, 450, 1161, 1444, 1535, 1644, 2012
BseJI GATNNNNATC 1 cut(s) 1391
BseLI CCNNNNNNNGG 7 cut(s) 256, 380, 604, 605, 1852, 1925, 2050
BseMII CTCAG 2 cut(s) 757, 1185
BseNI ACTGG 4 cut(s) 160, 682, 949, 1187
BseSI GKGCMC 1 cut(s) 844
BseXI GCAGC 1 cut(s) 2002
BsgI GTGCAG 1 cut(s) 2009
Bsh1236I CGCG 2 cut(s) 1614, 1636
Bsh1285I CGRYCG 1 cut(s) 56
BshFI GGCC 8 cut(s) 81, 329, 430, 546, 565, 579, 597, 1625
BshNI GGYRCC 1 cut(s) 778
BshVI ATCGAT 1 cut(s) 1716
BsiEI CGRYCG 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 1493
BsiHKCI CYCGRG 1 cut(s) 1208
BsiSI CCGG 3 cut(s) 363, 1209, 1919
BsiWI CGTACG 2 cut(s) 140, 636
BslFI GGGAC 5 cut(s) 83, 784, 1597, 1614, 1908
BslI CCNNNNNNNGG 7 cut(s) 256, 380, 604, 605, 1852, 1925, 2050
BsmAI GTCTC 4 cut(s) 233, 499, 1172, 1932
BsmBI CGTCTC 1 cut(s) 1172
BsmFI GGGAC 5 cut(s) 83, 784, 1597, 1614, 1908
BsmI GAATGC 4 cut(s) 885, 911, 1310, 1312
BsnI GGCC 8 cut(s) 81, 329, 430, 546, 565, 579, 597, 1625
BsoBI CYCGRG 1 cut(s) 1208
Bsp1286I GDGCHC 4 cut(s) 831, 844, 1136, 1493
Bsp13I TCCGGA 1 cut(s) 1918
Bsp1407I TGTACA 2 cut(s) 975, 1572
Bsp143I GATC 6 cut(s) 1246, 1587, 1684, 1713, 1809, 1823
Bsp1720I GCTNAGC 1 cut(s) 344
Bsp19I CCATGG 1 cut(s) 774
BspACI CCGC 8 cut(s) 297, 396, 599, 1221, 1317, 1539, 1612, 1636
BspANI GGCC 8 cut(s) 81, 329, 430, 546, 565, 579, 597, 1625
BspCNI CTCAG 2 cut(s) 756, 1184
BspDI ATCGAT 1 cut(s) 1716
BspEI TCCGGA 1 cut(s) 1918
BspFNI CGCG 2 cut(s) 1614, 1636
BspHI TCATGA 3 cut(s) 513, 834, 918
BspLI GGNNCC 5 cut(s) 156, 772, 780, 1602, 1931
BspPI GGATC 1 cut(s) 1679
BspT107I GGYRCC 1 cut(s) 778
BsrGI TGTACA 2 cut(s) 975, 1572
BsrI ACTGG 4 cut(s) 160, 682, 949, 1187
BssECI CCNNGG 5 cut(s) 774, 844, 1208, 1513, 1933
BssMI GATC 6 cut(s) 1246, 1587, 1684, 1713, 1809, 1823
BssT1I CCWWGG 2 cut(s) 774, 844
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 6 cut(s) 54, 145, 337, 718, 1577, 1669
BstAPI GCANNNNNTGC 1 cut(s) 556
BstAUI TGTACA 2 cut(s) 975, 1572
BstC8I GCNNGC 5 cut(s) 548, 599, 738, 804, 1291
BstDEI CTNAG 6 cut(s) 203, 344, 743, 987, 1171, 1627
BstDSI CCRYGG 1 cut(s) 774
BstF5I GGATG 7 cut(s) 321, 450, 1161, 1444, 1535, 1644, 2012
BstFNI CGCG 2 cut(s) 1614, 1636
BstHHI GCGC 1 cut(s) 1327
BstKTI GATC 6 cut(s) 1249, 1590, 1687, 1716, 1812, 1826
BstMAI GTCTC 4 cut(s) 233, 499, 1172, 1932
BstMBI GATC 6 cut(s) 1246, 1587, 1684, 1713, 1809, 1823
BstMCI CGRYCG 1 cut(s) 56
BstNI CCWGG 1 cut(s) 326
BstNSI RCATGY 3 cut(s) 1069, 1790, 1945
BstSCI CCNGG 3 cut(s) 324, 1207, 1208
BstSFI CTRYAG 1 cut(s) 910
BstSLI GKGCMC 1 cut(s) 844
BstUI CGCG 2 cut(s) 1614, 1636
BstV1I GCAGC 1 cut(s) 2002
BstV2I GAAGAC 6 cut(s) 273, 719, 1018, 1105, 1870, 2030
BstX2I RGATCY 1 cut(s) 1823
BstYI RGATCY 1 cut(s) 1823
Bsu15I ATCGAT 1 cut(s) 1716
BsuRI GGCC 8 cut(s) 81, 329, 430, 546, 565, 579, 597, 1625
BsuTUI ATCGAT 1 cut(s) 1716
BtgI CCRYGG 1 cut(s) 774
BtrI CACGTC 2 cut(s) 217, 1771
BtsCI GGATG 7 cut(s) 321, 450, 1161, 1444, 1535, 1644, 2012
BtsI GCAGTG 2 cut(s) 195, 1300
BtsIMutI CAGTG 7 cut(s) 195, 203, 675, 1300, 1420, 1582, 1983
Cac8I GCNNGC 5 cut(s) 548, 599, 738, 804, 1291
CciI TCATGA 3 cut(s) 513, 834, 918
CfoI GCGC 1 cut(s) 1327
Cfr13I GGNCC 6 cut(s) 544, 563, 577, 596, 771, 1601
Cfr9I CCCGGG 1 cut(s) 1208
ClaI ATCGAT 1 cut(s) 1716
CseI GACGC 3 cut(s) 821, 1642, 1789
Csp6I GTAC 8 cut(s) 141, 338, 637, 976, 1273, 1428, 1518, 1573
CviQI GTAC 8 cut(s) 141, 338, 637, 976, 1273, 1428, 1518, 1573
DdeI CTNAG 6 cut(s) 203, 344, 743, 987, 1171, 1627
DpnI GATC 6 cut(s) 1248, 1589, 1686, 1715, 1811, 1825
DpnII GATC 6 cut(s) 1246, 1587, 1684, 1713, 1809, 1823
DrdI GACNNNNNNGTC 1 cut(s) 863
DriI GACNNNNNGTC 1 cut(s) 1058
DseDI GACNNNNNNGTC 1 cut(s) 863
Eam1105I GACNNNNNGTC 1 cut(s) 1058
Eco130I CCWWGG 2 cut(s) 774, 844
Eco147I AGGCCT 1 cut(s) 81
Eco24I GRGCYC 2 cut(s) 831, 1136
Eco32I GATATC 1 cut(s) 2032
Eco47I GGWCC 2 cut(s) 771, 1601
Eco57I CTGAAG 1 cut(s) 1249
Eco88I CYCGRG 1 cut(s) 1208
EcoO109I RGGNCCY 1 cut(s) 1601
EcoRII CCWGG 1 cut(s) 324
EcoRV GATATC 1 cut(s) 2032
EcoT14I CCWWGG 2 cut(s) 774, 844
EcoT22I ATGCAT 1 cut(s) 1312
EcoT38I GRGCYC 2 cut(s) 831, 1136
ErhI CCWWGG 2 cut(s) 774, 844
Esp3I CGTCTC 1 cut(s) 1172
FaqI GGGAC 5 cut(s) 83, 784, 1597, 1614, 1908
FauI CCCGC 1 cut(s) 606
FbaI TGATCA 1 cut(s) 1809
FblI GTMKAC 3 cut(s) 1509, 1773, 1803
Fnu4HI GCNGC 2 cut(s) 396, 1991
FokI GGATG 7 cut(s) 308, 457, 1148, 1431, 1522, 1651, 2019
FriOI GRGCYC 2 cut(s) 831, 1136
Fsp4HI GCNGC 2 cut(s) 396, 1991
FspBI CTAG 2 cut(s) 17, 1925
GlaI GCGC 1 cut(s) 1326
GluI GCNGC 2 cut(s) 396, 1991
GsuI CTGGAG 1 cut(s) 1170
HaeIII GGCC 8 cut(s) 81, 329, 430, 546, 565, 579, 597, 1625
HapII CCGG 3 cut(s) 363, 1209, 1919
HgaI GACGC 3 cut(s) 821, 1642, 1789
HhaI GCGC 1 cut(s) 1327
Hin6I GCGC 1 cut(s) 1325
HinP1I GCGC 1 cut(s) 1325
HincII GTYRAC 2 cut(s) 1462, 1804
HindII GTYRAC 2 cut(s) 1462, 1804
HinfI GANTC 8 cut(s) 300, 632, 687, 948, 1501, 1718, 1877, 2054
HpaII CCGG 3 cut(s) 363, 1209, 1919
HphI GGTGA 4 cut(s) 545, 844, 946, 1306
Hpy166II GTNNAC 7 cut(s) 675, 1002, 1156, 1462, 1510, 1774, 1804
Hpy188I TCNGA 8 cut(s) 50, 259, 707, 1052, 1246, 1268, 1723, 1937
Hpy188III TCNNGA 6 cut(s) 57, 514, 835, 919, 1560, 1919
Hpy8I GTNNAC 7 cut(s) 675, 1002, 1156, 1462, 1510, 1774, 1804
Hpy99I CGWCG 4 cut(s) 815, 1349, 1636, 1805
HpyAV CCTTC 5 cut(s) 340, 792, 869, 1273, 2044
HpyCH4III ACNGT 6 cut(s) 54, 145, 337, 718, 1577, 1669
HpyCH4IV ACGT 5 cut(s) 139, 216, 639, 1520, 1770
HpyF3I CTNAG 6 cut(s) 203, 344, 743, 987, 1171, 1627
HpySE526I ACGT 5 cut(s) 139, 216, 639, 1520, 1770
HspAI GCGC 1 cut(s) 1325
Kpn2I TCCGGA 1 cut(s) 1918
Ksp22I TGATCA 1 cut(s) 1809
Kzo9I GATC 6 cut(s) 1246, 1587, 1684, 1713, 1809, 1823
LmnI GCTCC 5 cut(s) 252, 259, 1189, 1489, 1496
Lsp1109I GCAGC 1 cut(s) 2002
LweI GCATC 4 cut(s) 858, 924, 1948, 1958
MaeI CTAG 2 cut(s) 17, 1925
MaeII ACGT 5 cut(s) 139, 216, 639, 1520, 1770
MaeIII GTNAC 2 cut(s) 145, 1669
MalI GATC 6 cut(s) 1248, 1589, 1686, 1715, 1811, 1825
MboI GATC 6 cut(s) 1246, 1587, 1684, 1713, 1809, 1823
MfeI CAATTG 1 cut(s) 1320
MflI RGATCY 1 cut(s) 1823
MhlI GDGCHC 4 cut(s) 831, 844, 1136, 1493
MluCI AATT 8 cut(s) 411, 691, 968, 1320, 1436, 1676, 1848, 1963
MlyI GAGTC 2 cut(s) 309, 626
MmeI TCCRAC 2 cut(s) 669, 1145
Mph1103I ATGCAT 1 cut(s) 1312
MroI TCCGGA 1 cut(s) 1918
MroXI GAANNNNTTC 1 cut(s) 1310
MseI TTAA 5 cut(s) 27, 386, 477, 1791, 2092
MslI CAYNNNNRTG 4 cut(s) 188, 512, 923, 1872
MspI CCGG 3 cut(s) 363, 1209, 1919
MspR9I CCNGG 3 cut(s) 326, 1209, 1210
MunI CAATTG 1 cut(s) 1320
Mva1269I GAATGC 4 cut(s) 885, 911, 1310, 1312
MvaI CCWGG 1 cut(s) 326
MvnI CGCG 2 cut(s) 1614, 1636
NciI CCSGG 2 cut(s) 1209, 1210
NcoI CCATGG 1 cut(s) 774
NdeII GATC 6 cut(s) 1246, 1587, 1684, 1713, 1809, 1823
NlaIV GGNNCC 5 cut(s) 156, 772, 780, 1602, 1931
NmeAIII GCCGAG 2 cut(s) 65, 684
NmuCI GTSAC 1 cut(s) 145
NsiI ATGCAT 1 cut(s) 1312
NspI RCATGY 3 cut(s) 1069, 1790, 1945
PagI TCATGA 3 cut(s) 513, 834, 918
PceI AGGCCT 1 cut(s) 81
PciI ACATGT 1 cut(s) 1941
PctI GAATGC 4 cut(s) 885, 911, 1310, 1312
PdmI GAANNNNTTC 1 cut(s) 1310
PfeI GAWTC 6 cut(s) 687, 948, 1501, 1718, 1877, 2054
Pfl23II CGTACG 2 cut(s) 140, 636
PkrI GCNGC 2 cut(s) 397, 1992
PleI GAGTC 2 cut(s) 308, 626
PpsI GAGTC 2 cut(s) 308, 626
PpuMI RGGWCCY 1 cut(s) 1601
PscI ACATGT 1 cut(s) 1941
PsiI TTATAA 1 cut(s) 1730
Psp5II RGGWCCY 1 cut(s) 1601
Psp6I CCWGG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 324
PspLI CGTACG 2 cut(s) 140, 636
PspN4I GGNNCC 5 cut(s) 156, 772, 780, 1602, 1931
PspPI GGNCC 6 cut(s) 544, 563, 577, 596, 771, 1601
PspPPI RGGWCCY 1 cut(s) 1601
PsuI RGATCY 1 cut(s) 1823
RsaI GTAC 8 cut(s) 142, 339, 638, 977, 1274, 1429, 1519, 1574
RsaNI GTAC 8 cut(s) 141, 338, 637, 976, 1273, 1428, 1518, 1573
RseI CAYNNNNRTG 4 cut(s) 188, 512, 923, 1872
SalI GTCGAC 1 cut(s) 1802
SaqAI TTAA 5 cut(s) 27, 386, 477, 1791, 2092
SatI GCNGC 2 cut(s) 396, 1991
Sau3AI GATC 6 cut(s) 1246, 1587, 1684, 1713, 1809, 1823
Sau96I GGNCC 6 cut(s) 544, 563, 577, 596, 771, 1601
SchI GAGTC 2 cut(s) 309, 626
ScrFI CCNGG 3 cut(s) 326, 1209, 1210
SduI GDGCHC 4 cut(s) 831, 844, 1136, 1493
SfaNI GCATC 4 cut(s) 858, 924, 1948, 1958
SfcI CTRYAG 1 cut(s) 910
SinI GGWCC 2 cut(s) 771, 1601
SmaI CCCGGG 1 cut(s) 1210
SmiMI CAYNNNNRTG 4 cut(s) 188, 512, 923, 1872
Sse9I AATT 8 cut(s) 411, 691, 968, 1320, 1436, 1676, 1848, 1963
SseBI AGGCCT 1 cut(s) 81
SsiI CCGC 8 cut(s) 297, 396, 599, 1221, 1317, 1539, 1612, 1636
SspI AATATT 1 cut(s) 1471
SspMI CTAG 2 cut(s) 17, 1925
StuI AGGCCT 1 cut(s) 81
StyD4I CCNGG 3 cut(s) 324, 1207, 1208
StyI CCWWGG 2 cut(s) 774, 844
TaaI ACNGT 6 cut(s) 54, 145, 337, 718, 1577, 1669
TaiI ACGT 5 cut(s) 142, 219, 642, 1523, 1773
TaqI TCGA 7 cut(s) 287, 810, 1177, 1716, 1803, 1842, 2086
TaqII GACCGA 1 cut(s) 1527
TasI AATT 8 cut(s) 411, 691, 968, 1320, 1436, 1676, 1848, 1963
TatI WGTACW 2 cut(s) 975, 1572
TauI GCSGC 1 cut(s) 398
TfiI GAWTC 6 cut(s) 687, 948, 1501, 1718, 1877, 2054
Tru1I TTAA 5 cut(s) 27, 386, 477, 1791, 2092
Tru9I TTAA 5 cut(s) 27, 386, 477, 1791, 2092
TscAI CASTG 7 cut(s) 195, 203, 682, 1300, 1420, 1582, 1983
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 1 cut(s) 1990
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 8 cut(s) 368, 409, 493, 725, 810, 1319, 1748, 1879
TspGWI ACGGA 4 cut(s) 915, 1154, 1476, 1483
TspMI CCCGGG 1 cut(s) 1208
TspRI CASTG 7 cut(s) 195, 203, 682, 1300, 1420, 1582, 1983
VpaK11BI GGWCC 2 cut(s) 771, 1601
XapI RAATTY 2 cut(s) 968, 1676
XceI RCATGY 3 cut(s) 1069, 1790, 1945
XcmI CCANNNNNNNNNTGG 2 cut(s) 438, 505
XmaI CCCGGG 1 cut(s) 1208
XmiI GTMKAC 3 cut(s) 1509, 1773, 1803
XmnI GAANNNNTTC 1 cut(s) 1310
XspI CTAG 2 cut(s) 17, 1925
Zsp2I ATGCAT 1 cut(s) 1312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.