Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0014704

Physical Location & Seq

Genomic Coordinates Reverse (-)

78515620 .. 78519088

Gene Structure 3469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG500900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2535 bp

ATGCATGTCTCTCATATCCATGCATGGCTAGACGTCTCTCCTCTCCTCGCCTCTCTATCCCTTCTCTCTATCTGGCTAACATCTTTGTTTTATTTTTCTTTTCTAAACGCTTTATTGTTGAACTACTATAGGATCACAATGAATAGGGCAAACTGGATATGCGAGACCCAGAAAGGCATAAGATCGAAAGGTATCTTTTTGGGTGATAATCCTTTGAAATACCCATCTCCAATACTTCTTCTGCAACTTACTATAGCTGCCTTGGTCACCACTCTCTTCCAATTCATTCTCAACCCTCTCGGAGAAAGTGCTTATATCTCACAAATGCTGGCAGGTATTCTATTGGGACCATCATTCTTAGGAGGAGAAAATGATTTTGCAGAAATAGTTTACCCAGTTAAAAGTTTCTACATCAGCCAAACCTTTGCTTTCTTTGGTTGCATGCTTTTTCTATTCCTAGTGGGTGTTAAAATGGATTTGAGTATAGTCAGACGGTCGGGAAAGAAATCTGTGGTCATAGGCCTCTCGGCATTTTTCGTCCCTTTGGTTCTAAATGTAGGCTTCGCTCTCGTTCTGCAACGTACGGTCACCATGGAACCCCAGTTGCACAAATCACTTGTAGCCATAGCAGTGTTTCAGTGCCTAAGTAGCTTCCACGTCATCGGTTGTCTCTTGGGCGATTTGAAGCTCCTAAACTCGGAGCTTGGTCGTTTGGCTGTATCTTCTTCGATGATTAGCGGAGTCATCTCTTGGATTTGGGTCATCCTGGCCTTCACAGTACGGCTAAGCACCATGAAAAAGACCGGAAACTTGCCTTTTATGGGTTTAAGTTTAGCCGCATTGTTTGTTCTAATTATATTCATAATGAGGCCAATAATGCTGTGGATGGTTGCCCAAACAGCTAAAGGCAAACCCATTAAAGAGAGCTACATAGTCTCCATCTTCATCATGGTCATGATTTGTTCCCTTCTCGGTGAGATTGTGGGCCAGCATTTTTTGCTTGGGCCTATGGTTTTGGGCCTCGTCGTGCCGGACGGCCCGCCTTTGGGGTCAGCATTGGTGGAGAAACTTGACTCGTACGTTTCCAACATTCTGTTGCCGAGCTACTTTCTGTTCACTGGTGCAAGAATCAATTTGAGTGAAATCAGAATGAAGACTGTTGGGATTGTGGAGGTGCTGGCCCTCAGTAGCTTTTGTGGTAAAGTATTAGGGACCATGGTGCCTTCACTCTATTGCAAAATGCCTGCTATCGACGCACTTTCATTAGGGCTCATCATGAGTGCCCAAGGCATCACCGACCTTCTTGTCTTGCAACATGGAATGCTACTCTTGCTCATTGACGGAGAATGCTACAGCATCATGATTATGTCATCGGTTTTATTTACTGGAATCATCACCCCCATAGTGAAATTTCTGTACAACCCCTCTAAGAGATACAAGTCCACAAAGCGAAGACGAACCATTGAGCATTCCTTGCCAAACATGGAACTAGGACTTCTTGTCTGCATGTTCCACCAAGACAGCACTCCCTCCATCATCAACCTAATAGAAGTCTTCAATCCAACCCCCAAGAGCCCCATTTGCTGCTGCGTTGTCCACCTCATCCGTCTCTCAGGTCGAACAGCTCCAGTCCTCATAACCCACAGACCCGGGAAAAGCACCTCTTTACACTCAAACAACTACTCCGATCACATAATCAATGCCTTCAGATTGTACCAAGAACACAATGCCAGCAGTGTCATAATGAATGCATTCACCGCAATTGCGCCCTATGCCACAATGCACGACGAGGTTTGCACACTTGCTTTTGAAAAAAGGACTTCCATGATAATAATCCCATTTCACAAGTTTTTCAGTGCTATCCAATGCACCGAAGAATTAGCGCATCCAATCAGGTCTGTCAACAGAAATATTCTTCAAAATGCTCCGTGCTCCGTTGGGATTCTTGTAGACCGAGGTACGTTGAATAAAAAACCATCCGCTTTACACACTTCTATATCAGGAAGAAGTTTGTACAGCGTTGGGACGATCTTTGTTGAGGGACCTGATGACCGCGAAGCATTGGCGTTAGCGACGCGGATGGCTGGAAACCCCAATGTCAGCCTAACCGTTACCAAATTTACCGATCCCAAGCAAAATAGAACCCAGAAAGAGATCGATTCGGAAGTTATAATGAAGTATAAGACAGCCATTGATGGCAAAAAACAGCATGTCTACAAAGAGGTACATGTTAAAGATAGCGTTGACATGATCAATGAGATTAGATCGATGGAGGATTTTTTCGACCTAATTCTGGTGGGGAGAAGACATGATAGTGATTCGCCGTTGTTCATGGGACTTACCGAATGGAATGAGTTTCAGGAACTAGGGTTCCTCGGAGACATGTTAGCATCTTTTGATGCAAATTGCGAGGTGTCAGTGCTGGTGGTGCAGCAACAATCGTTTGGATCTGCTGAAAAAGAGAAGACTGATATCTTTAAATGCCATGTGAAGGATTCGTTTTCTGTTGTGGATATACCTCATAATCGACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

844

Amino Acids

93.75

Weight (kDa)

8.66

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	87 - 469	2.6e-35	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	531 - 654	1e-15	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	673 - 813	9.1e-11	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g39830 FvH4_3g39830
malus_domestica	MD03G1057100.v1.1 MD11G1059100.v1.1
prunus_persica	Prupe.6G047700_v2.0.a1
pyrus_communis	pycom11g04890
rosa_chinensis	RchiOBHm_Chr5g0071771
rosa_laevigata	RLG00000036244
rosa_multiflora	Rmu_sc0001113.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009450
rosa_rugosa	Rorug05G0414400 Rorug05G0414500
rosa_samantha	Rh5AG470500 Rh5BG490200 Rh5CG514200 Rh5DG500900
rosa_wichuraiana	Rw5G043720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2171
AasI	GACNNNNNNGTC	1 cut(s)	1304
AatII	GACGTC	1 cut(s)	36
Acc36I	ACCTGC	1 cut(s)	323
AccB1I	GGYRCC	1 cut(s)	1219
AccI	GTMKAC	2 cut(s)	1950, 2214
AccII	CGCG	2 cut(s)	2055, 2077
AciI	CCGC	7 cut(s)	738, 837, 1040, 1758, 1980, 2053, 2077
AclWI	GGATC	3 cut(s)	140, 2120, 2455
AcsI	RAATTY	2 cut(s)	1409, 2117
AcuI	CTGAAG	1 cut(s)	1690
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	8 cut(s)	583, 780, 1079, 1418, 1715, 1960, 2015, 2226
AfiI	CCNNNNNNNGG	6 cut(s)	697, 821, 1045, 1046, 2293, 2491
AflIII	ACRYGT	2 cut(s)	2227, 2382
AgsI	TTSAA	7 cut(s)	121, 217, 685, 1558, 1811, 1919, 1966
AhdI	GACNNNNNGTC	1 cut(s)	1499
AjiI	CACGTC	1 cut(s)	658
AjnI	CCWGG	1 cut(s)	765
AloI	GAACNNNNNNTCC	4 cut(s)	2354, 2355, 2386, 2387
AluBI	AGCT	9 cut(s)	257, 651, 688, 703, 902, 927, 1104, 1191, 1625
AluI	AGCT	9 cut(s)	257, 651, 688, 703, 902, 927, 1104, 1191, 1625
Alw21I	GWGCWC	1 cut(s)	1934
Alw26I	GTCTC	7 cut(s)	13, 40, 158, 674, 940, 1613, 2373
AlwI	GGATC	3 cut(s)	140, 2120, 2455
Ama87I	CYCGRG	1 cut(s)	1649
AoxI	GGCC	8 cut(s)	520, 768, 869, 985, 1004, 1018, 1036, 1179
ApeKI	GCWGC	4 cut(s)	257, 1584, 1587, 2431
ApoI	RAATTY	2 cut(s)	1409, 2117
Asp700I	GAANNNNTTC	1 cut(s)	1751
AspLEI	GCGC	2 cut(s)	1768, 1885
AspS9I	GGNCC	8 cut(s)	347, 985, 1004, 1018, 1037, 1180, 1212, 2042
AsuC2I	CCSGG	2 cut(s)	1650, 1651
AsuHPI	GGTGA	7 cut(s)	215, 259, 580, 986, 1285, 1387, 1747
AvaI	CYCGRG	1 cut(s)	1649
AvaII	GGWCC	3 cut(s)	347, 1212, 2042
BaeGI	GKGCMC	1 cut(s)	1285
BanI	GGYRCC	1 cut(s)	1219
BanII	GRGCYC	2 cut(s)	1272, 1577
BbsI	GAAGAC	5 cut(s)	1160, 1459, 1546, 2311, 2471
Bbv12I	GWGCWC	1 cut(s)	1934
BbvI	GCAGC	4 cut(s)	244, 1571, 1574, 2443
BccI	CCATC	9 cut(s)	232, 358, 880, 947, 1541, 1984, 2074, 2189, 2263
BceAI	ACGGC	3 cut(s)	797, 1051, 2308
BciT130I	CCWGG	1 cut(s)	767
BclI	TGATCA	1 cut(s)	2250
BcnI	CCSGG	2 cut(s)	1650, 1651
BcoDI	GTCTC	7 cut(s)	13, 40, 158, 674, 940, 1613, 2373
BfaI	CTAG	4 cut(s)	29, 458, 1490, 2366
BfmI	CTRYAG	3 cut(s)	127, 252, 1351
BfuAI	ACCTGC	1 cut(s)	323
BisI	GCNGC	5 cut(s)	258, 837, 1585, 1588, 2432
BlpI	GCTNAGC	1 cut(s)	785
BlsI	GCNGC	5 cut(s)	259, 838, 1586, 1589, 2433
Bme1390I	CCNGG	3 cut(s)	767, 1650, 1651
Bme18I	GGWCC	3 cut(s)	347, 1212, 2042
BmeRI	GACNNNNNGTC	1 cut(s)	1499
BmeT110I	CYCGRG	1 cut(s)	1649
BmgBI	CACGTC	1 cut(s)	658
BmgT120I	GGNCC	8 cut(s)	347, 985, 1004, 1018, 1037, 1180, 1212, 2042
BmiI	GGNNCC	6 cut(s)	348, 597, 1213, 1221, 2043, 2372
BmrFI	CCNGG	3 cut(s)	767, 1650, 1651
BmrI	ACTGGG	2 cut(s)	389, 595
BmsI	GCATC	5 cut(s)	1299, 1365, 1894, 2389, 2399
BmuI	ACTGGG	2 cut(s)	389, 595
BpiI	GAAGAC	5 cut(s)	1160, 1459, 1546, 2311, 2471
BpmI	CTGGAG	1 cut(s)	1611
Bpu1102I	GCTNAGC	1 cut(s)	785
BpuMI	CCSGG	2 cut(s)	1650, 1651
Bsa29I	ATCGAT	2 cut(s)	2157, 2267
BsaBI	GATNNNNATC	1 cut(s)	1832
BsaHI	GRCGYC	1 cut(s)	33
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	7 cut(s)	261, 591, 1215, 1285, 1649, 1954, 2374
BsaWI	WCCGGW	1 cut(s)	803
BsaXI	ACNNNNNCTCC	4 cut(s)	920, 950, 1667, 1697
Bsc4I	CCNNNNNNNGG	6 cut(s)	697, 821, 1045, 1046, 2293, 2491
Bse1I	ACTGG	6 cut(s)	158, 395, 601, 1123, 1390, 1628
Bse8I	GATNNNNATC	1 cut(s)	1832
BseBI	CCWGG	1 cut(s)	767
BseCI	ATCGAT	2 cut(s)	2157, 2267
BseDI	CCNNGG	7 cut(s)	261, 591, 1215, 1285, 1649, 1954, 2374
BseGI	GGATG	6 cut(s)	762, 891, 1602, 1885, 1976, 2085
BseJI	GATNNNNATC	1 cut(s)	1832
BseLI	CCNNNNNNNGG	6 cut(s)	697, 821, 1045, 1046, 2293, 2491
BseMII	CTCAG	2 cut(s)	1198, 1626
BseNI	ACTGG	6 cut(s)	158, 395, 601, 1123, 1390, 1628
BseRI	GAGGAG	3 cut(s)	30, 35, 378
BseSI	GKGCMC	1 cut(s)	1285
BseXI	GCAGC	4 cut(s)	244, 1571, 1574, 2443
BsgI	GTGCAG	1 cut(s)	2450
Bsh1236I	CGCG	2 cut(s)	2055, 2077
Bsh1285I	CGRYCG	1 cut(s)	497
BshFI	GGCC	8 cut(s)	522, 770, 871, 987, 1006, 1020, 1038, 1181
BshNI	GGYRCC	1 cut(s)	1219
BshVI	ATCGAT	2 cut(s)	2157, 2267
BsiEI	CGRYCG	1 cut(s)	497
BsiHKAI	GWGCWC	1 cut(s)	1934
BsiHKCI	CYCGRG	1 cut(s)	1649
BsiSI	CCGG	3 cut(s)	804, 1031, 1650
BsiWI	CGTACG	2 cut(s)	581, 1077
BslFI	GGGAC	6 cut(s)	360, 524, 1225, 2038, 2055, 2349
BslI	CCNNNNNNNGG	6 cut(s)	697, 821, 1045, 1046, 2293, 2491
BsmAI	GTCTC	7 cut(s)	13, 40, 158, 674, 940, 1613, 2373
BsmBI	CGTCTC	2 cut(s)	40, 1613
BsmFI	GGGAC	6 cut(s)	360, 524, 1225, 2038, 2055, 2349
BsmI	GAATGC	5 cut(s)	1326, 1352, 1468, 1751, 1753
BsnI	GGCC	8 cut(s)	522, 770, 871, 987, 1006, 1020, 1038, 1181
Bso31I	GGTCTC	1 cut(s)	158
BsoBI	CYCGRG	1 cut(s)	1649
Bsp1286I	GDGCHC	4 cut(s)	1272, 1285, 1577, 1934
Bsp1407I	TGTACA	2 cut(s)	1416, 2013
Bsp143I	GATC	9 cut(s)	132, 182, 1687, 2028, 2125, 2154, 2250, 2264, 2447
Bsp1720I	GCTNAGC	1 cut(s)	785
Bsp19I	CCATGG	2 cut(s)	591, 1215
BspACI	CCGC	7 cut(s)	738, 837, 1040, 1758, 1980, 2053, 2077
BspANI	GGCC	8 cut(s)	522, 770, 871, 987, 1006, 1020, 1038, 1181
BspCNI	CTCAG	2 cut(s)	1197, 1625
BspDI	ATCGAT	2 cut(s)	2157, 2267
BspFNI	CGCG	2 cut(s)	2055, 2077
BspHI	TCATGA	3 cut(s)	954, 1275, 1359
BspLI	GGNNCC	6 cut(s)	348, 597, 1213, 1221, 2043, 2372
BspMI	ACCTGC	1 cut(s)	323
BspPI	GGATC	3 cut(s)	140, 2120, 2455
BspT107I	GGYRCC	1 cut(s)	1219
BspTNI	GGTCTC	1 cut(s)	158
BsrGI	TGTACA	2 cut(s)	1416, 2013
BsrI	ACTGG	6 cut(s)	158, 395, 601, 1123, 1390, 1628
BssECI	CCNNGG	7 cut(s)	261, 591, 1215, 1285, 1649, 1954, 2374
BssMI	GATC	9 cut(s)	132, 182, 1687, 2028, 2125, 2154, 2250, 2264, 2447
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	4 cut(s)	261, 591, 1215, 1285
Bst2UI	CCWGG	1 cut(s)	767
Bst4CI	ACNGT	5 cut(s)	495, 586, 778, 1159, 2110
Bst6I	CTCTTC	1 cut(s)	281
BstACI	GRCGYC	1 cut(s)	33
BstAPI	GCANNNNNTGC	2 cut(s)	997, 1474
BstAUI	TGTACA	2 cut(s)	1416, 2013
BstC8I	GCNNGC	7 cut(s)	330, 443, 989, 1040, 1179, 1245, 1732
BstDEI	CTNAG	6 cut(s)	358, 644, 785, 1184, 1428, 1612
BstDSI	CCRYGG	2 cut(s)	591, 1215
BstEII	GGTNACC	2 cut(s)	265, 586
BstF5I	GGATG	6 cut(s)	762, 891, 1602, 1885, 1976, 2085
BstFNI	CGCG	2 cut(s)	2055, 2077
BstHHI	GCGC	2 cut(s)	1768, 1885
BstKTI	GATC	9 cut(s)	135, 185, 1690, 2031, 2128, 2157, 2253, 2267, 2450
BstMAI	GTCTC	7 cut(s)	13, 40, 158, 674, 940, 1613, 2373
BstMBI	GATC	9 cut(s)	132, 182, 1687, 2028, 2125, 2154, 2250, 2264, 2447
BstMCI	CGRYCG	1 cut(s)	497
BstNI	CCWGG	1 cut(s)	767
BstNSI	RCATGY	6 cut(s)	8, 445, 1510, 2213, 2231, 2386
BstPI	GGTNACC	2 cut(s)	265, 586
BstSCI	CCNGG	3 cut(s)	765, 1648, 1649
BstSFI	CTRYAG	3 cut(s)	127, 252, 1351
BstSLI	GKGCMC	1 cut(s)	1285
BstUI	CGCG	2 cut(s)	2055, 2077
BstV1I	GCAGC	4 cut(s)	244, 1571, 1574, 2443
BstV2I	GAAGAC	5 cut(s)	1160, 1459, 1546, 2311, 2471
BstX2I	RGATCY	1 cut(s)	2447
BstYI	RGATCY	1 cut(s)	2447
Bsu15I	ATCGAT	2 cut(s)	2157, 2267
BsuRI	GGCC	8 cut(s)	522, 770, 871, 987, 1006, 1020, 1038, 1181
BsuTUI	ATCGAT	2 cut(s)	2157, 2267
BtgI	CCRYGG	2 cut(s)	591, 1215
BtrI	CACGTC	1 cut(s)	658
BtsCI	GGATG	6 cut(s)	762, 891, 1602, 1885, 1976, 2085
BtsI	GCAGTG	2 cut(s)	636, 1741
BtsIMutI	CAGTG	6 cut(s)	636, 644, 1116, 1741, 1861, 2424
BveI	ACCTGC	1 cut(s)	323
Cac8I	GCNNGC	7 cut(s)	330, 443, 989, 1040, 1179, 1245, 1732
CciI	TCATGA	3 cut(s)	954, 1275, 1359
CfoI	GCGC	2 cut(s)	1768, 1885
Cfr13I	GGNCC	8 cut(s)	347, 985, 1004, 1018, 1037, 1180, 1212, 2042
Cfr9I	CCCGGG	1 cut(s)	1649
ClaI	ATCGAT	2 cut(s)	2157, 2267
CseI	GACGC	2 cut(s)	1262, 2083
Csp6I	GTAC	8 cut(s)	582, 779, 1078, 1417, 1714, 1959, 2014, 2225
CviQI	GTAC	8 cut(s)	582, 779, 1078, 1417, 1714, 1959, 2014, 2225
DdeI	CTNAG	6 cut(s)	358, 644, 785, 1184, 1428, 1612
DpnI	GATC	9 cut(s)	134, 184, 1689, 2030, 2127, 2156, 2252, 2266, 2449
DpnII	GATC	9 cut(s)	132, 182, 1687, 2028, 2125, 2154, 2250, 2264, 2447
DraI	TTTAAA	1 cut(s)	2479
DrdI	GACNNNNNNGTC	1 cut(s)	1304
DriI	GACNNNNNGTC	1 cut(s)	1499
DseDI	GACNNNNNNGTC	1 cut(s)	1304
Eam1104I	CTCTTC	1 cut(s)	281
Eam1105I	GACNNNNNGTC	1 cut(s)	1499
EarI	CTCTTC	1 cut(s)	281
Eco130I	CCWWGG	4 cut(s)	261, 591, 1215, 1285
Eco147I	AGGCCT	1 cut(s)	522
Eco24I	GRGCYC	2 cut(s)	1272, 1577
Eco31I	GGTCTC	1 cut(s)	158
Eco32I	GATATC	1 cut(s)	2473
Eco47I	GGWCC	3 cut(s)	347, 1212, 2042
Eco57I	CTGAAG	1 cut(s)	1690
Eco88I	CYCGRG	1 cut(s)	1649
Eco91I	GGTNACC	2 cut(s)	265, 586
EcoO109I	RGGNCCY	1 cut(s)	2042
EcoO65I	GGTNACC	2 cut(s)	265, 586
EcoRII	CCWGG	1 cut(s)	765
EcoRV	GATATC	1 cut(s)	2473
EcoT14I	CCWWGG	4 cut(s)	261, 591, 1215, 1285
EcoT22I	ATGCAT	3 cut(s)	6, 25, 1753
EcoT38I	GRGCYC	2 cut(s)	1272, 1577
ErhI	CCWWGG	4 cut(s)	261, 591, 1215, 1285
Esp3I	CGTCTC	2 cut(s)	40, 1613
FalI	AAGNNNNNCTT	2 cut(s)	1648, 1680
FaqI	GGGAC	6 cut(s)	360, 524, 1225, 2038, 2055, 2349
FauI	CCCGC	1 cut(s)	1047
FbaI	TGATCA	1 cut(s)	2250
FblI	GTMKAC	2 cut(s)	1950, 2214
Fnu4HI	GCNGC	5 cut(s)	258, 837, 1585, 1588, 2432
FokI	GGATG	6 cut(s)	749, 898, 1589, 1872, 1963, 2092
FriOI	GRGCYC	2 cut(s)	1272, 1577
Fsp4HI	GCNGC	5 cut(s)	258, 837, 1585, 1588, 2432
FspBI	CTAG	4 cut(s)	29, 458, 1490, 2366
GlaI	GCGC	2 cut(s)	1767, 1884
GluI	GCNGC	5 cut(s)	258, 837, 1585, 1588, 2432
GsuI	CTGGAG	1 cut(s)	1611
HaeIII	GGCC	8 cut(s)	522, 770, 871, 987, 1006, 1020, 1038, 1181
HapII	CCGG	3 cut(s)	804, 1031, 1650
HgaI	GACGC	2 cut(s)	1262, 2083
HhaI	GCGC	2 cut(s)	1768, 1885
Hin1I	GRCGYC	1 cut(s)	33
Hin6I	GCGC	2 cut(s)	1766, 1883
HinP1I	GCGC	2 cut(s)	1766, 1883
HincII	GTYRAC	2 cut(s)	1903, 2245
HindII	GTYRAC	2 cut(s)	1903, 2245
HinfI	GANTC	8 cut(s)	741, 1073, 1128, 1389, 1942, 2159, 2318, 2495
HpaII	CCGG	3 cut(s)	804, 1031, 1650
HphI	GGTGA	7 cut(s)	215, 259, 580, 986, 1285, 1387, 1747
Hpy166II	GTNNAC	8 cut(s)	391, 1116, 1443, 1597, 1903, 1951, 2215, 2245
Hpy188I	TCNGA	8 cut(s)	302, 491, 700, 1148, 1687, 1709, 2164, 2378
Hpy188III	TCNNGA	6 cut(s)	498, 955, 1276, 1360, 2001, 2360
Hpy8I	GTNNAC	8 cut(s)	391, 1116, 1443, 1597, 1903, 1951, 2215, 2245
Hpy99I	CGWCG	4 cut(s)	1028, 1256, 1790, 2077
HpyAV	CCTTC	7 cut(s)	71, 781, 977, 1233, 1310, 1714, 2485
HpyCH4III	ACNGT	5 cut(s)	495, 586, 778, 1159, 2110
HpyCH4IV	ACGT	5 cut(s)	33, 580, 657, 1080, 1961
HpyF3I	CTNAG	6 cut(s)	358, 644, 785, 1184, 1428, 1612
HpySE526I	ACGT	5 cut(s)	33, 580, 657, 1080, 1961
Hsp92I	GRCGYC	1 cut(s)	33
HspAI	GCGC	2 cut(s)	1766, 1883
Ksp22I	TGATCA	1 cut(s)	2250
Kzo9I	GATC	9 cut(s)	132, 182, 1687, 2028, 2125, 2154, 2250, 2264, 2447
LmnI	GCTCC	5 cut(s)	693, 700, 1630, 1930, 1937
Lsp1109I	GCAGC	4 cut(s)	244, 1571, 1574, 2443
LweI	GCATC	5 cut(s)	1299, 1365, 1894, 2389, 2399
MaeI	CTAG	4 cut(s)	29, 458, 1490, 2366
MaeII	ACGT	5 cut(s)	33, 580, 657, 1080, 1961
MaeIII	GTNAC	3 cut(s)	265, 586, 2110
MalI	GATC	9 cut(s)	134, 184, 1689, 2030, 2127, 2156, 2252, 2266, 2449
MboI	GATC	9 cut(s)	132, 182, 1687, 2028, 2125, 2154, 2250, 2264, 2447
MfeI	CAATTG	1 cut(s)	1761
MflI	RGATCY	1 cut(s)	2447
MhlI	GDGCHC	4 cut(s)	1272, 1285, 1577, 1934
MluCI	AATT	9 cut(s)	281, 852, 1132, 1409, 1761, 1877, 2117, 2289, 2404
MlyI	GAGTC	2 cut(s)	750, 1067
MmeI	TCCRAC	2 cut(s)	1110, 1586
Mph1103I	ATGCAT	3 cut(s)	6, 25, 1753
MroXI	GAANNNNTTC	1 cut(s)	1751
MseI	TTAA	7 cut(s)	399, 468, 827, 918, 2232, 2478, 2533
MslI	CAYNNNNRTG	5 cut(s)	18, 629, 953, 1364, 2313
MspI	CCGG	3 cut(s)	804, 1031, 1650
MspR9I	CCNGG	3 cut(s)	767, 1650, 1651
MunI	CAATTG	1 cut(s)	1761
Mva1269I	GAATGC	5 cut(s)	1326, 1352, 1468, 1751, 1753
MvaI	CCWGG	1 cut(s)	767
MvnI	CGCG	2 cut(s)	2055, 2077
NciI	CCSGG	2 cut(s)	1650, 1651
NcoI	CCATGG	2 cut(s)	591, 1215
NdeII	GATC	9 cut(s)	132, 182, 1687, 2028, 2125, 2154, 2250, 2264, 2447
NlaIV	GGNNCC	6 cut(s)	348, 597, 1213, 1221, 2043, 2372
NmeAIII	GCCGAG	2 cut(s)	506, 1125
NmuCI	GTSAC	2 cut(s)	265, 586
NsiI	ATGCAT	3 cut(s)	6, 25, 1753
NspI	RCATGY	6 cut(s)	8, 445, 1510, 2213, 2231, 2386
PaeI	GCATGC	1 cut(s)	445
PagI	TCATGA	3 cut(s)	954, 1275, 1359
PceI	AGGCCT	1 cut(s)	522
PciI	ACATGT	2 cut(s)	2227, 2382
PctI	GAATGC	5 cut(s)	1326, 1352, 1468, 1751, 1753
PdmI	GAANNNNTTC	1 cut(s)	1751
PfeI	GAWTC	6 cut(s)	1128, 1389, 1942, 2159, 2318, 2495
Pfl23II	CGTACG	2 cut(s)	581, 1077
PkrI	GCNGC	5 cut(s)	259, 838, 1586, 1589, 2433
PleI	GAGTC	2 cut(s)	749, 1067
PpsI	GAGTC	2 cut(s)	749, 1067
PpuMI	RGGWCCY	1 cut(s)	2042
PscI	ACATGT	2 cut(s)	2227, 2382
PsiI	TTATAA	1 cut(s)	2171
Psp5II	RGGWCCY	1 cut(s)	2042
Psp6I	CCWGG	1 cut(s)	765
PspEI	GGTNACC	2 cut(s)	265, 586
PspGI	CCWGG	1 cut(s)	765
PspLI	CGTACG	2 cut(s)	581, 1077
PspN4I	GGNNCC	6 cut(s)	348, 597, 1213, 1221, 2043, 2372
PspPI	GGNCC	8 cut(s)	347, 985, 1004, 1018, 1037, 1180, 1212, 2042
PspPPI	RGGWCCY	1 cut(s)	2042
PsuI	RGATCY	1 cut(s)	2447
RsaI	GTAC	8 cut(s)	583, 780, 1079, 1418, 1715, 1960, 2015, 2226
RsaNI	GTAC	8 cut(s)	582, 779, 1078, 1417, 1714, 1959, 2014, 2225
RseI	CAYNNNNRTG	5 cut(s)	18, 629, 953, 1364, 2313
SaqAI	TTAA	7 cut(s)	399, 468, 827, 918, 2232, 2478, 2533
SatI	GCNGC	5 cut(s)	258, 837, 1585, 1588, 2432
Sau3AI	GATC	9 cut(s)	132, 182, 1687, 2028, 2125, 2154, 2250, 2264, 2447
Sau96I	GGNCC	8 cut(s)	347, 985, 1004, 1018, 1037, 1180, 1212, 2042
SchI	GAGTC	2 cut(s)	750, 1067
ScrFI	CCNGG	3 cut(s)	767, 1650, 1651
SduI	GDGCHC	4 cut(s)	1272, 1285, 1577, 1934
SfaNI	GCATC	5 cut(s)	1299, 1365, 1894, 2389, 2399
SfcI	CTRYAG	3 cut(s)	127, 252, 1351
SinI	GGWCC	3 cut(s)	347, 1212, 2042
SmaI	CCCGGG	1 cut(s)	1651
SmiMI	CAYNNNNRTG	5 cut(s)	18, 629, 953, 1364, 2313
SphI	GCATGC	1 cut(s)	445
Sse9I	AATT	9 cut(s)	281, 852, 1132, 1409, 1761, 1877, 2117, 2289, 2404
SseBI	AGGCCT	1 cut(s)	522
SsiI	CCGC	7 cut(s)	738, 837, 1040, 1758, 1980, 2053, 2077
SspI	AATATT	1 cut(s)	1912
SspMI	CTAG	4 cut(s)	29, 458, 1490, 2366
StuI	AGGCCT	1 cut(s)	522
StyD4I	CCNGG	3 cut(s)	765, 1648, 1649
StyI	CCWWGG	4 cut(s)	261, 591, 1215, 1285
TaaI	ACNGT	5 cut(s)	495, 586, 778, 1159, 2110
TaiI	ACGT	5 cut(s)	36, 583, 660, 1083, 1964
TaqI	TCGA	8 cut(s)	185, 728, 1251, 1618, 2157, 2267, 2283, 2527
TaqII	GACCGA	1 cut(s)	1968
TasI	AATT	9 cut(s)	281, 852, 1132, 1409, 1761, 1877, 2117, 2289, 2404
TatI	WGTACW	2 cut(s)	1416, 2013
TauI	GCSGC	1 cut(s)	839
TfiI	GAWTC	6 cut(s)	1128, 1389, 1942, 2159, 2318, 2495
Tru1I	TTAA	7 cut(s)	399, 468, 827, 918, 2232, 2478, 2533
Tru9I	TTAA	7 cut(s)	399, 468, 827, 918, 2232, 2478, 2533
TscAI	CASTG	6 cut(s)	636, 644, 1123, 1741, 1861, 2424
TseFI	GTSAC	2 cut(s)	265, 586
TseI	GCWGC	4 cut(s)	257, 1584, 1587, 2431
Tsp45I	GTSAC	2 cut(s)	265, 586
TspGWI	ACGGA	4 cut(s)	1356, 1595, 1917, 1924
TspMI	CCCGGG	1 cut(s)	1649
TspRI	CASTG	6 cut(s)	636, 644, 1123, 1741, 1861, 2424
VpaK11BI	GGWCC	3 cut(s)	347, 1212, 2042
XapI	RAATTY	2 cut(s)	1409, 2117
XceI	RCATGY	6 cut(s)	8, 445, 1510, 2213, 2231, 2386
XcmI	CCANNNNNNNNNTGG	2 cut(s)	879, 946
XmaI	CCCGGG	1 cut(s)	1649
XmiI	GTMKAC	2 cut(s)	1950, 2214
XmnI	GAANNNNTTC	1 cut(s)	1751
XspI	CTAG	4 cut(s)	29, 458, 1490, 2366
ZraI	GACGTC	1 cut(s)	34
Zsp2I	ATGCAT	3 cut(s)	6, 25, 1753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.