Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0015702

Physical Location & Seq

Genomic Coordinates Reverse (-)

5379494 .. 5379760

Gene Structure 267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1067400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGTCTGGGCCTGGCAAAGGAGGCAAAGGTCTAGGAAAGGGAAGAGCAAAACGTCACTGTAAGGTTCTCTGCGACAACATCCAGGGCATCACCAAGTCGACCATCCGCCGTTCGGCTCGCAGAGGCGGTGTAAAGCGTATCAGCGGCTTGATCTACGAGGAGACACGTGGCGTGCTCAAGATCTTCTTGGAGAACGTGATCATAGGCGTTGTGACATACACCGAGCATGCTAGCCGCAAGACCGTGACCTCCATGGATGTGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000786 GO:0000788 GO:0000790 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006950 GO:0006996 GO:0007049 GO:0007059 GO:0007143 GO:0007276 GO:0007292 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0010035 GO:0016020 GO:0016043 GO:0016321 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0030054 GO:0031090 GO:0031497 GO:0031974 GO:0031981 GO:0032501 GO:0032504 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0035059 GO:0042221 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0044815 GO:0045132 GO:0048285 GO:0048609 GO:0050896 GO:0051276 GO:0051321 GO:0051704 GO:0055044 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:0098813 GO:0140013 GO:1901363 GO:1901700 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko05034 ko05203 ko05322 map05034 map05203 map05322

Pfam Domains

Protein Families

CENP-T_C

Protein Analysis

89

Amino Acids

9.54

Weight (kDa)

10.58

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015702)

Species	Orthologous Gene IDs
malus_domestica	MD03G1067400.v1.1 MD07G1131900.v1.1 MD07G1146700.v1.1 MD11G1096900.v1.1 MD14G1181800.v1.1
prunus_persica	Prupe.2G224400_v2.0.a1 Prupe.3G163200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0277791 RchiOBHm_Chr6g0282951
rosa_multiflora	Rmu_sc0004140.1_g000006
rosa_roxburghii	Rroxscaffold_6G00399880
rosa_rugosa	Rorug06G0385900
rosa_samantha	Rh2AG556600 Rh5AG417400 Rh6DG219000 Rh7AG433800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	98
AciI	CCGC	4 cut(s)	106, 126, 144, 235
AcvI	CACGTG	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	17, 112
AflIII	ACRYGT	1 cut(s)	164
AjnI	CCWGG	2 cut(s)	10, 81
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	155
AoxI	GGCC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	82
AsuNHI	GCTAGC	1 cut(s)	230
BbrPI	CACGTG	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	177
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	93
BciT130I	CCWGG	2 cut(s)	12, 83
BclI	TGATCA	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	2 cut(s)	32, 231
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	2 cut(s)	145, 235
BlsI	GCNGC	2 cut(s)	146, 236
Bme1390I	CCNGG	2 cut(s)	12, 83
BmgT120I	GGNCC	1 cut(s)	8
BmrFI	CCNGG	2 cut(s)	12, 83
BmsI	GCATC	1 cut(s)	96
BmtI	GCTAGC	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	161
BsaAI	YACGTR	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	82, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 112
BseBI	CCWGG	2 cut(s)	12, 83
BseDI	CCNNGG	2 cut(s)	82, 252
BseGI	GGATG	3 cut(s)	78, 102, 262
BseLI	CCNNNNNNNGG	2 cut(s)	17, 112
BseRI	GAGGAG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	177
BslI	CCNNNNNNNGG	2 cut(s)	17, 112
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	3 cut(s)	150, 180, 198
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	4 cut(s)	106, 126, 144, 235
BspANI	GGCC	1 cut(s)	10
BspOI	GCTAGC	1 cut(s)	234
BspQI	GCTCTTC	1 cut(s)	37
BssECI	CCNNGG	2 cut(s)	82, 252
BssMI	GATC	3 cut(s)	150, 180, 198
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	2 cut(s)	12, 83
Bst4CI	ACNGT	2 cut(s)	59, 244
Bst6I	CTCTTC	1 cut(s)	37
BstBAI	YACGTR	1 cut(s)	167
BstC8I	GCNNGC	4 cut(s)	118, 173, 228, 232
BstDSI	CCRYGG	1 cut(s)	252
BstENI	CCTNNNNNAGG	1 cut(s)	15
BstF5I	GGATG	3 cut(s)	78, 102, 262
BstKTI	GATC	3 cut(s)	153, 183, 201
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	3 cut(s)	150, 180, 198
BstMWI	GCNNNNNNNGC	1 cut(s)	21
BstNI	CCWGG	2 cut(s)	12, 83
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	10, 81
BstX2I	RGATCY	1 cut(s)	180
BstXI	CCANNNNNNTGG	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	10
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	3 cut(s)	78, 102, 262
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	4 cut(s)	118, 173, 228, 232
Cfr13I	GGNCC	1 cut(s)	8
CviAII	CATG	2 cut(s)	227, 253
CviJI	RGCY	4 cut(s)	10, 116, 147, 234
CviKI_1	RGCY	4 cut(s)	10, 116, 147, 234
DpnI	GATC	3 cut(s)	152, 182, 200
DpnII	GATC	3 cut(s)	150, 180, 198
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
EciI	GGCGGA	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	252
Eco72I	CACGTG	1 cut(s)	167
EcoNI	CCTNNNNNAGG	1 cut(s)	15
EcoRII	CCWGG	2 cut(s)	10, 81
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	2 cut(s)	230, 256
FaiI	YATR	4 cut(s)	203, 217, 228, 254
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FatI	CATG	2 cut(s)	226, 252
FbaI	TGATCA	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	98
Fnu4HI	GCNGC	2 cut(s)	145, 235
FokI	GGATG	2 cut(s)	65, 89
Fsp4HI	GCNGC	2 cut(s)	145, 235
FspBI	CTAG	2 cut(s)	32, 231
GluI	GCNGC	2 cut(s)	145, 235
HaeIII	GGCC	1 cut(s)	10
Hin1II	CATG	2 cut(s)	230, 256
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	1 cut(s)	99
HpyCH4III	ACNGT	2 cut(s)	59, 244
HpyCH4IV	ACGT	3 cut(s)	52, 166, 195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	21
HpySE526I	ACGT	3 cut(s)	52, 166, 195
Hsp92II	CATG	2 cut(s)	230, 256
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	3 cut(s)	150, 180, 198
LguI	GCTCTTC	1 cut(s)	37
LpnPI	CCDG	3 cut(s)	24, 68, 95
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	2 cut(s)	32, 231
MaeII	ACGT	3 cut(s)	52, 166, 195
MaeIII	GTNAC	3 cut(s)	53, 211, 244
MalI	GATC	3 cut(s)	152, 182, 200
MboI	GATC	3 cut(s)	150, 180, 198
MboII	GAAGA	2 cut(s)	54, 175
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	177
MnlI	CCTC	4 cut(s)	14, 116, 151, 259
MslI	CAYNNNNRTG	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	144
MspR9I	CCNGG	2 cut(s)	12, 83
MvaI	CCWGG	2 cut(s)	12, 83
MwoI	GCNNNNNNNGC	1 cut(s)	21
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	3 cut(s)	150, 180, 198
NheI	GCTAGC	1 cut(s)	230
NlaIII	CATG	2 cut(s)	230, 256
NmuCI	GTSAC	3 cut(s)	53, 211, 244
NspI	RCATGY	1 cut(s)	230
PaeI	GCATGC	1 cut(s)	230
PciSI	GCTCTTC	1 cut(s)	37
PkrI	GCNGC	2 cut(s)	146, 236
PmaCI	CACGTG	1 cut(s)	167
PmlI	CACGTG	1 cut(s)	167
Ppu21I	YACGTR	1 cut(s)	167
Psp6I	CCWGG	2 cut(s)	10, 81
PspCI	CACGTG	1 cut(s)	167
PspGI	CCWGG	2 cut(s)	10, 81
PspPI	GGNCC	1 cut(s)	8
PsuI	RGATCY	1 cut(s)	180
RseI	CAYNNNNRTG	1 cut(s)	257
SalI	GTCGAC	1 cut(s)	97
SapI	GCTCTTC	1 cut(s)	37
SatI	GCNGC	2 cut(s)	145, 235
Sau3AI	GATC	3 cut(s)	150, 180, 198
Sau96I	GGNCC	1 cut(s)	8
ScrFI	CCNGG	2 cut(s)	12, 83
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	6 cut(s)	31, 55, 66, 169, 198, 251
SfaNI	GCATC	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SphI	GCATGC	1 cut(s)	230
SsiI	CCGC	4 cut(s)	106, 126, 144, 235
SspMI	CTAG	2 cut(s)	32, 231
StyD4I	CCNGG	2 cut(s)	10, 81
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	2 cut(s)	59, 244
TaiI	ACGT	3 cut(s)	55, 169, 198
TaqI	TCGA	1 cut(s)	98
TauI	GCSGC	2 cut(s)	147, 237
TscAI	CASTG	1 cut(s)	62
TseFI	GTSAC	3 cut(s)	53, 211, 244
Tsp45I	GTSAC	3 cut(s)	53, 211, 244
TspRI	CASTG	1 cut(s)	62
XagI	CCTNNNNNAGG	1 cut(s)	15
XceI	RCATGY	1 cut(s)	230
XmiI	GTMKAC	1 cut(s)	98
XspI	CTAG	2 cut(s)	32, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.