MD11G1096900.v1.1

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015702
Physical Location & Seq
Forward (+)
8063602 .. 8063769
168 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1096900.v1.1.491

Sequence Viewer

Length: 168 bp
ATGACTGGACGCGGCAAGGGAGGCAATGGGTTGGGCAAGGGAGGAGCCAAGAGGCACAGAAAGGTGCTGAGGGACAACATCCAGGGCATCACAAAGCCCACCATCCGCCGTCTGGCTCACCGTGGCGGCGTTAAGCGGATCAATCTTCTTGGAGAATGTGATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000122 GO:0000228 GO:0000785 GO:0000786 GO:0000788 GO:0000790 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006342 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0030154 GO:0030435 GO:0031298 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031497 GO:0031974 GO:0031981 GO:0032259 GO:0032502 GO:0032991 GO:0032993 GO:0034293 GO:0034622 GO:0034728 GO:0034729 GO:0034968 GO:0036211 GO:0040029 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043596 GO:0043933 GO:0043934 GO:0043935 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0044815 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051321 GO:0051704 GO:0060255 GO:0061587 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1901564 GO:1902679 GO:1903046 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
CENP-T_C

Protein Analysis

56

Amino Acids

5.95

Weight (kDa)

11.8

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 12
AciI CCGC 4 cut(s) 12, 106, 126, 136
AclWI GGATC 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 112
AjnI CCWGG 1 cut(s) 81
AlwI GGATC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 110
BbvCI CCTCAGC 1 cut(s) 68
BccI CCATC 1 cut(s) 110
BceAI ACGGC 1 cut(s) 93
BciT130I CCWGG 1 cut(s) 83
BclI TGATCA 1 cut(s) 160
BisI GCNGC 2 cut(s) 13, 127
BlsI GCNGC 2 cut(s) 14, 128
Bme1390I CCNGG 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 96
Bpu10I CCTNAGC 1 cut(s) 68
BsaJI CCNNGG 2 cut(s) 82, 121
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 10
Bse3DI GCAATG 1 cut(s) 31
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 2 cut(s) 82, 121
BseGI GGATG 2 cut(s) 78, 102
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMI GCAATG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 59
BseNI ACTGG 1 cut(s) 10
BseRI GAGGAG 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 12
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 112
BsmFI GGGAC 1 cut(s) 86
Bsp143I GATC 2 cut(s) 138, 160
BspACI CCGC 4 cut(s) 12, 106, 126, 136
BspCNI CTCAG 1 cut(s) 60
BspFNI CGCG 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 46
BspPI GGATC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 31
BsrI ACTGG 1 cut(s) 10
BssECI CCNNGG 2 cut(s) 82, 121
BssMI GATC 2 cut(s) 138, 160
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 122
BstDEI CTNAG 1 cut(s) 68
BstDSI CCRYGG 1 cut(s) 121
BstF5I GGATG 2 cut(s) 78, 102
BstFNI CGCG 1 cut(s) 12
BstKTI GATC 2 cut(s) 141, 163
BstMBI GATC 2 cut(s) 138, 160
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 81
BstUI CGCG 1 cut(s) 12
BtgI CCRYGG 1 cut(s) 121
BtsCI GGATG 2 cut(s) 78, 102
CseI GACGC 1 cut(s) 18
CviJI RGCY 3 cut(s) 47, 97, 116
CviKI_1 RGCY 3 cut(s) 47, 97, 116
DdeI CTNAG 1 cut(s) 68
DpnI GATC 2 cut(s) 140, 162
DpnII GATC 2 cut(s) 138, 160
EciI GGCGGA 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 81
FaqI GGGAC 1 cut(s) 86
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 2 cut(s) 13, 127
FokI GGATG 2 cut(s) 65, 89
Fsp4HI GCNGC 2 cut(s) 13, 127
GluI GCNGC 2 cut(s) 13, 127
HgaI GACGC 1 cut(s) 18
HphI GGTGA 1 cut(s) 110
HpyCH4III ACNGT 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpyF3I CTNAG 1 cut(s) 68
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 2 cut(s) 138, 160
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 3 cut(s) 68, 95, 98
LweI GCATC 1 cut(s) 96
MalI GATC 2 cut(s) 140, 162
MboI GATC 2 cut(s) 138, 160
MboII GAAGA 1 cut(s) 137
MnlI CCTC 4 cut(s) 14, 35, 45, 63
MseI TTAA 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 21
NdeII GATC 2 cut(s) 138, 160
NlaIV GGNNCC 1 cut(s) 46
PkrI GCNGC 2 cut(s) 14, 128
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 46
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 2 cut(s) 13, 127
Sau3AI GATC 2 cut(s) 138, 160
ScrFI CCNGG 1 cut(s) 83
SetI ASST 1 cut(s) 66
SfaNI GCATC 1 cut(s) 96
SsiI CCGC 4 cut(s) 12, 106, 126, 136
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 122
TauI GCSGC 2 cut(s) 15, 129
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.