MD14G1181800.v1.1

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0015702
Physical Location & Seq
Reverse (-)
27445705 .. 27445881
177 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1181800.v1.1.491

Sequence Viewer

Length: 177 bp
ATGGGTTCTTTTGGCTTATGCGAAAAGGAAGGCAAGGGGCTAGGCAAGGGAGGAGCCAAGAGGCACAGAAAGGTGCTGAGGGACAACATCCAGGGCATCACAAAGCTCGCCATCCGCCGTCTGGCTCGCCGTGGCGGCGTCAAGCGGATCAATCTTCTTGGAGAATGTGATCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000122 GO:0000228 GO:0000785 GO:0000786 GO:0000788 GO:0000790 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006342 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0030154 GO:0030435 GO:0031298 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031497 GO:0031974 GO:0031981 GO:0032259 GO:0032502 GO:0032991 GO:0032993 GO:0034293 GO:0034622 GO:0034728 GO:0034729 GO:0034968 GO:0036211 GO:0040029 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043596 GO:0043933 GO:0043934 GO:0043935 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0044815 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051321 GO:0051704 GO:0060255 GO:0061587 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1901564 GO:1902679 GO:1903046 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
CENP-T_C

Protein Analysis

59

Amino Acids

6.33

Weight (kDa)

10.98

Isoelectric Point (pI)

55.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 115, 135, 145
AclWI GGATC 2 cut(s) 155, 164
AcyI GRCGYC 1 cut(s) 138
AfiI CCNNNNNNNGG 1 cut(s) 121
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
AlwI GGATC 2 cut(s) 155, 164
BbvCI CCTCAGC 1 cut(s) 77
BccI CCATC 1 cut(s) 119
BceAI ACGGC 2 cut(s) 102, 114
BciT130I CCWGG 1 cut(s) 92
BfaI CTAG 1 cut(s) 41
BglI GCCNNNNNGGC 1 cut(s) 135
BisI GCNGC 1 cut(s) 136
BlsI GCNGC 1 cut(s) 137
Bme1390I CCNGG 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 77
BsaHI GRCGYC 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 91, 130
Bsc4I CCNNNNNNNGG 1 cut(s) 121
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 2 cut(s) 91, 130
BseGI GGATG 2 cut(s) 87, 111
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 68
BseRI GAGGAG 1 cut(s) 66
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 95
Bsp143I GATC 2 cut(s) 147, 169
BspACI CCGC 3 cut(s) 115, 135, 145
BspCNI CTCAG 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 2 cut(s) 155, 164
BssECI CCNNGG 2 cut(s) 91, 130
BssMI GATC 2 cut(s) 147, 169
BssNI GRCGYC 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 92
BstACI GRCGYC 1 cut(s) 138
BstC8I GCNNGC 2 cut(s) 108, 127
BstDEI CTNAG 1 cut(s) 77
BstDSI CCRYGG 1 cut(s) 130
BstF5I GGATG 2 cut(s) 87, 111
BstKTI GATC 2 cut(s) 150, 172
BstMBI GATC 2 cut(s) 147, 169
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BtgI CCRYGG 1 cut(s) 130
BtsCI GGATG 2 cut(s) 87, 111
Cac8I GCNNGC 2 cut(s) 108, 127
CseI GACGC 1 cut(s) 127
CviJI RGCY 5 cut(s) 15, 40, 56, 106, 125
CviKI_1 RGCY 5 cut(s) 15, 40, 56, 106, 125
DdeI CTNAG 1 cut(s) 77
DpnI GATC 2 cut(s) 149, 171
DpnII GATC 2 cut(s) 147, 169
EciI GGCGGA 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 90
FaiI YATR 1 cut(s) 19
FaqI GGGAC 1 cut(s) 95
Fnu4HI GCNGC 1 cut(s) 136
FokI GGATG 2 cut(s) 74, 98
Fsp4HI GCNGC 1 cut(s) 136
FspBI CTAG 1 cut(s) 41
GluI GCNGC 1 cut(s) 136
HgaI GACGC 1 cut(s) 127
Hin1I GRCGYC 1 cut(s) 138
HpyAV CCTTC 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpyF3I CTNAG 1 cut(s) 77
Hsp92I GRCGYC 1 cut(s) 138
Kzo9I GATC 2 cut(s) 147, 169
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 3 cut(s) 77, 104, 107
LweI GCATC 1 cut(s) 105
MaeI CTAG 1 cut(s) 41
MalI GATC 2 cut(s) 149, 171
MboI GATC 2 cut(s) 147, 169
MboII GAAGA 1 cut(s) 146
MnlI CCTC 3 cut(s) 44, 54, 72
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
MwoI GCNNNNNNNGC 1 cut(s) 135
NdeII GATC 2 cut(s) 147, 169
NlaIV GGNNCC 1 cut(s) 55
PkrI GCNGC 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 55
SatI GCNGC 1 cut(s) 136
Sau3AI GATC 2 cut(s) 147, 169
ScrFI CCNGG 1 cut(s) 92
SetI ASST 2 cut(s) 75, 108
SfaNI GCATC 1 cut(s) 105
SsiI CCGC 3 cut(s) 115, 135, 145
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 90
TauI GCSGC 1 cut(s) 138
TspGWI ACGGA 1 cut(s) 162
XcmI CCANNNNNNNNNTGG 1 cut(s) 118
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.