Rroxscaffold_6G00399880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0015702
Physical Location & Seq
Forward (+)
21921463 .. 21928969
7507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00399880.1

Sequence Viewer

Length: 420 bp
ATGGAGAAGGTATACCGAATCAACGTTGGCGGAGGCCCCATGACGCCGGCACCGAATGTACCGGACTTGGGAAACTTACATTACATCGGGAAGGGACACACTTCGATTCGAGCAGCAATAGGGGGACATCGTTCGGTTCGGTCGGACAAGATTCTGTTACATGACTGCCTATTGGTTGATTCTAAAGAGCCTGCAGACCCATCTTTTAACTCCCGACAAGAGAGGAAAGAAACTCCGGAGGCCCCCGAGAGCCGGTGGTTCGAGGCGGCTACCTCGGTCGGTAGCCCTCGTGGCCAGCCCCGGTGCTTGGTCAATGATGCTCGAGCATACCCGATTGAGTTCTCGGGCTCTCGGGCATCCATTTCACAGTACCCTTCTGCTAGATCCTCATCTACGGCTTCTTTTATTACAACCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.12

Weight (kDa)

9.34

Isoelectric Point (pI)

58.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 49
AccI GTMKAC 1 cut(s) 12
AccIII TCCGGA 1 cut(s) 235
AciI CCGC 2 cut(s) 30, 266
AclI AACGTT 1 cut(s) 24
AclWI GGATC 1 cut(s) 378
AcoI YGGCCR 1 cut(s) 292
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 2 cut(s) 60, 371
AfiI CCNNNNNNNGG 3 cut(s) 68, 252, 307
AlwI GGATC 1 cut(s) 378
Ama87I CYCGRG 4 cut(s) 245, 321, 343, 351
Aor13HI TCCGGA 1 cut(s) 235
AoxI GGCC 3 cut(s) 34, 240, 292
ApeKI GCWGC 1 cut(s) 113
AspS9I GGNCC 2 cut(s) 35, 241
AsuC2I CCSGG 1 cut(s) 301
AvaI CYCGRG 4 cut(s) 245, 321, 343, 351
BalI TGGCCA 1 cut(s) 294
BanI GGYRCC 1 cut(s) 49
BanII GRGCYC 1 cut(s) 350
BauI CACGAG 1 cut(s) 288
BbvI GCAGC 1 cut(s) 125
BccI CCATC 1 cut(s) 208
BceAI ACGGC 1 cut(s) 411
BcnI CCSGG 1 cut(s) 301
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 1 cut(s) 192
BglI GCCNNNNNGGC 1 cut(s) 291
BisI GCNGC 2 cut(s) 114, 267
BlsI GCNGC 2 cut(s) 115, 268
Bme1390I CCNGG 1 cut(s) 301
BmeT110I CYCGRG 4 cut(s) 245, 321, 343, 351
BmgT120I GGNCC 2 cut(s) 35, 241
BmiI GGNNCC 3 cut(s) 37, 51, 243
BmrFI CCNGG 1 cut(s) 301
BmsI GCATC 2 cut(s) 307, 365
BpuMI CCSGG 1 cut(s) 301
BsaBI GATNNNNATC 1 cut(s) 388
BsaHI GRCGYC 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 273, 299
BsaWI WCCGGW 2 cut(s) 61, 235
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 252, 307
Bse118I RCCGGY 2 cut(s) 46, 252
Bse8I GATNNNNATC 1 cut(s) 388
BseAI TCCGGA 1 cut(s) 235
BseDI CCNNGG 2 cut(s) 273, 299
BseGI GGATG 1 cut(s) 356
BseJI GATNNNNATC 1 cut(s) 388
BseLI CCNNNNNNNGG 3 cut(s) 68, 252, 307
BseXI GCAGC 1 cut(s) 125
Bsh1285I CGRYCG 2 cut(s) 143, 279
BshFI GGCC 3 cut(s) 36, 242, 294
BshNI GGYRCC 1 cut(s) 49
BsiEI CGRYCG 2 cut(s) 143, 279
BsiHKCI CYCGRG 4 cut(s) 245, 321, 343, 351
BsiSI CCGG 5 cut(s) 47, 62, 236, 253, 301
BslFI GGGAC 2 cut(s) 108, 138
BslI CCNNNNNNNGG 3 cut(s) 68, 252, 307
BsmFI GGGAC 2 cut(s) 108, 138
BsnI GGCC 3 cut(s) 36, 242, 294
BsoBI CYCGRG 4 cut(s) 245, 321, 343, 351
Bsp1286I GDGCHC 1 cut(s) 350
Bsp13I TCCGGA 1 cut(s) 235
Bsp143I GATC 1 cut(s) 383
BspACI CCGC 2 cut(s) 30, 266
BspANI GGCC 3 cut(s) 36, 242, 294
BspEI TCCGGA 1 cut(s) 235
BspLI GGNNCC 3 cut(s) 37, 51, 243
BspMAI CTGCAG 1 cut(s) 196
BspPI GGATC 1 cut(s) 378
BspT107I GGYRCC 1 cut(s) 49
BsrFI RCCGGY 2 cut(s) 46, 252
BssAI RCCGGY 2 cut(s) 46, 252
BssECI CCNNGG 2 cut(s) 273, 299
BssMI GATC 1 cut(s) 383
BssNAI GTATAC 1 cut(s) 13
BssNI GRCGYC 1 cut(s) 44
BssSI CACGAG 1 cut(s) 288
Bst1107I GTATAC 1 cut(s) 13
Bst2BI CACGAG 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 369
BstACI GRCGYC 1 cut(s) 44
BstC8I GCNNGC 3 cut(s) 48, 192, 296
BstF5I GGATG 1 cut(s) 356
BstKTI GATC 1 cut(s) 386
BstMBI GATC 1 cut(s) 383
BstMCI CGRYCG 2 cut(s) 143, 279
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 299
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 125
BstX2I RGATCY 1 cut(s) 383
BstYI RGATCY 1 cut(s) 383
BstZ17I GTATAC 1 cut(s) 13
BsuRI GGCC 3 cut(s) 36, 242, 294
BtsCI GGATG 1 cut(s) 356
Cac8I GCNNGC 3 cut(s) 48, 192, 296
Cfr10I RCCGGY 2 cut(s) 46, 252
Cfr13I GGNCC 2 cut(s) 35, 241
CseI GACGC 1 cut(s) 52
Csp6I GTAC 2 cut(s) 59, 370
CviAII CATG 2 cut(s) 40, 161
CviQI GTAC 2 cut(s) 59, 370
DpnI GATC 1 cut(s) 385
DpnII GATC 1 cut(s) 383
EaeI YGGCCR 1 cut(s) 292
EciI GGCGGA 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 350
Eco88I CYCGRG 4 cut(s) 245, 321, 343, 351
EcoO109I RGGNCCY 2 cut(s) 35, 241
EcoT38I GRGCYC 1 cut(s) 350
FaeI CATG 2 cut(s) 43, 164
FaiI YATR 4 cut(s) 13, 41, 162, 328
FaqI GGGAC 2 cut(s) 108, 138
FatI CATG 2 cut(s) 39, 160
FblI GTMKAC 1 cut(s) 12
Fnu4HI GCNGC 2 cut(s) 114, 267
FokI GGATG 1 cut(s) 343
FriOI GRGCYC 1 cut(s) 350
Fsp4HI GCNGC 2 cut(s) 114, 267
FspBI CTAG 1 cut(s) 381
GluI GCNGC 2 cut(s) 114, 267
HaeIII GGCC 3 cut(s) 36, 242, 294
HapII CCGG 5 cut(s) 47, 62, 236, 253, 301
HgaI GACGC 1 cut(s) 52
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 2 cut(s) 43, 164
HinfI GANTC 4 cut(s) 18, 106, 151, 179
HpaII CCGG 5 cut(s) 47, 62, 236, 253, 301
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 3 cut(s) 88, 213, 236
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 2 cut(s) 85, 384
HpyCH4III ACNGT 1 cut(s) 369
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 1 cut(s) 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
HpySE526I ACGT 1 cut(s) 24
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 2 cut(s) 43, 164
Kpn2I TCCGGA 1 cut(s) 235
KroI GCCGGC 1 cut(s) 46
KroNI GCCGGC 1 cut(s) 48
Kzo9I GATC 1 cut(s) 383
LpnPI CCDG 7 cut(s) 60, 75, 204, 249, 266, 308, 314
Lsp1109I GCAGC 1 cut(s) 125
LweI GCATC 2 cut(s) 307, 365
MaeI CTAG 1 cut(s) 381
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 156
MalI GATC 1 cut(s) 385
MboI GATC 1 cut(s) 383
MflI RGATCY 1 cut(s) 383
MhlI GDGCHC 1 cut(s) 350
MlsI TGGCCA 1 cut(s) 294
MluNI TGGCCA 1 cut(s) 294
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 7 cut(s) 26, 216, 232, 256, 283, 297, 397
Mox20I TGGCCA 1 cut(s) 294
MroI TCCGGA 1 cut(s) 235
MroNI GCCGGC 1 cut(s) 46
MscI TGGCCA 1 cut(s) 294
MseI TTAA 1 cut(s) 207
Msp20I TGGCCA 1 cut(s) 294
MspI CCGG 5 cut(s) 47, 62, 236, 253, 301
MspR9I CCNGG 1 cut(s) 301
MwoI GCNNNNNNNGC 1 cut(s) 291
NaeI GCCGGC 1 cut(s) 48
NciI CCSGG 1 cut(s) 301
NdeII GATC 1 cut(s) 383
NgoMIV GCCGGC 1 cut(s) 46
NlaIII CATG 2 cut(s) 43, 164
NlaIV GGNNCC 3 cut(s) 37, 51, 243
PaeR7I CTCGAG 1 cut(s) 321
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PdiI GCCGGC 1 cut(s) 48
PfeI GAWTC 4 cut(s) 18, 106, 151, 179
PkrI GCNGC 2 cut(s) 115, 268
Psp1406I AACGTT 1 cut(s) 24
PspN4I GGNNCC 3 cut(s) 37, 51, 243
PspPI GGNCC 2 cut(s) 35, 241
PspXI VCTCGAGB 1 cut(s) 321
PstI CTGCAG 1 cut(s) 196
PsuI RGATCY 1 cut(s) 383
RsaI GTAC 2 cut(s) 60, 371
RsaNI GTAC 2 cut(s) 59, 370
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 2 cut(s) 114, 267
Sau3AI GATC 1 cut(s) 383
Sau96I GGNCC 2 cut(s) 35, 241
ScrFI CCNGG 1 cut(s) 301
SduI GDGCHC 1 cut(s) 350
SetI ASST 3 cut(s) 12, 27, 275
SfaNI GCATC 2 cut(s) 307, 365
SfcI CTRYAG 1 cut(s) 192
Sfr274I CTCGAG 1 cut(s) 321
SlaI CTCGAG 1 cut(s) 321
SmlI CTYRAG 1 cut(s) 321
SmoI CTYRAG 1 cut(s) 321
SsiI CCGC 2 cut(s) 30, 266
SspMI CTAG 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 299
TaaI ACNGT 1 cut(s) 369
TaiI ACGT 1 cut(s) 27
TaqI TCGA 4 cut(s) 104, 109, 261, 322
TaqII GACCGA 2 cut(s) 129, 265
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 4 cut(s) 18, 106, 151, 179
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TseI GCWGC 1 cut(s) 113
XhoI CTCGAG 1 cut(s) 321
XmiI GTMKAC 1 cut(s) 12
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.