Prupe.2G224400_v2.0.a1

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015702
Physical Location & Seq
Forward (+)
25182711 .. 25182992
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G224400.1

Sequence Viewer

Length: 252 bp
ATGTCTTGGCGCGGTAAGGGAGGCAAGGGTTTGGGAAAGGGAGGAGCCAAACGGCACCGTAAGGTCCTTCGCGATAACATCCAGGGCATCACCGAGCCGGCCATTCGTCGTTTGGCTCGTAGAGGAGGTGAGACACGTGGCGTGCTCAAAATCTTCCTCGAGAACGTGATCAGCGACGCCATGACCTACACTAAGCACGCTCGCCGCAAGACGGTGACGGCCATGAATGTGGTCTACGCCTTGAAGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
CENP-T_C

Protein Analysis

84

Amino Acids

9.3

Weight (kDa)

11.73

Isoelectric Point (pI)

48.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 54
AccI GTMKAC 1 cut(s) 234
AccII CGCG 2 cut(s) 12, 72
AciI CCGC 2 cut(s) 12, 205
AcoI YGGCCR 2 cut(s) 99, 219
AcvI CACGTG 1 cut(s) 137
AcyI GRCGYC 1 cut(s) 177
AfiI CCNNNNNNNGG 2 cut(s) 211, 246
AflIII ACRYGT 1 cut(s) 134
AgsI TTSAA 1 cut(s) 244
AjnI CCWGG 1 cut(s) 81
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 1 cut(s) 125
Ama87I CYCGRG 1 cut(s) 158
AoxI GGCC 2 cut(s) 99, 219
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 64
AsuHPI GGTGA 3 cut(s) 82, 140, 226
AvaI CYCGRG 1 cut(s) 158
AvaII GGWCC 1 cut(s) 64
BanI GGYRCC 1 cut(s) 54
BbrPI CACGTG 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 147
BceAI ACGGC 2 cut(s) 68, 234
BciT130I CCWGG 1 cut(s) 83
BclI TGATCA 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 125
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 64
BmeT110I CYCGRG 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 2 cut(s) 46, 56
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 96
BsaAI YACGTR 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 82
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 246
Bse118I RCCGGY 1 cut(s) 97
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 1 cut(s) 78
BseLI CCNNNNNNNGG 2 cut(s) 211, 246
BseRI GAGGAG 2 cut(s) 57, 138
Bsh1236I CGCG 2 cut(s) 12, 72
BshFI GGCC 2 cut(s) 101, 221
BshNI GGYRCC 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 158
BsiSI CCGG 1 cut(s) 98
BslI CCNNNNNNNGG 2 cut(s) 211, 246
BsmAI GTCTC 1 cut(s) 125
BsnI GGCC 2 cut(s) 101, 221
BsoBI CYCGRG 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 1 cut(s) 168
Bsp68I TCGCGA 1 cut(s) 72
BspACI CCGC 2 cut(s) 12, 205
BspANI GGCC 2 cut(s) 101, 221
BspFNI CGCG 2 cut(s) 12, 72
BspLI GGNNCC 2 cut(s) 46, 56
BspT107I GGYRCC 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 97
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 1 cut(s) 168
BssNI GRCGYC 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 2 cut(s) 59, 214
Bst6I CTCTTC 1 cut(s) 239
BstACI GRCGYC 1 cut(s) 177
BstBAI YACGTR 1 cut(s) 137
BstC8I GCNNGC 4 cut(s) 99, 143, 198, 202
BstDEI CTNAG 1 cut(s) 192
BstENI CCTNNNNNAGG 1 cut(s) 244
BstF5I GGATG 1 cut(s) 78
BstFNI CGCG 2 cut(s) 12, 72
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 1 cut(s) 171
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 1 cut(s) 168
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 81
BstUI CGCG 2 cut(s) 12, 72
BstXI CCANNNNNNTGG 1 cut(s) 229
BsuRI GGCC 2 cut(s) 101, 221
BtsCI GGATG 1 cut(s) 78
BtuMI TCGCGA 1 cut(s) 72
Cac8I GCNNGC 4 cut(s) 99, 143, 198, 202
CfoI GCGC 1 cut(s) 12
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 64
CseI GACGC 1 cut(s) 185
CviAII CATG 2 cut(s) 181, 223
CviJI RGCY 5 cut(s) 47, 97, 101, 116, 221
CviKI_1 RGCY 5 cut(s) 47, 97, 101, 116, 221
DdeI CTNAG 1 cut(s) 192
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
EaeI YGGCCR 2 cut(s) 99, 219
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco47I GGWCC 1 cut(s) 64
Eco72I CACGTG 1 cut(s) 137
Eco88I CYCGRG 1 cut(s) 158
EcoNI CCTNNNNNAGG 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 81
FaeI CATG 2 cut(s) 184, 226
FaiI YATR 2 cut(s) 182, 224
FatI CATG 2 cut(s) 180, 222
FbaI TGATCA 1 cut(s) 168
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 205
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 205
GlaI GCGC 1 cut(s) 11
GluI GCNGC 1 cut(s) 205
HaeIII GGCC 2 cut(s) 101, 221
HapII CCGG 1 cut(s) 98
HgaI GACGC 1 cut(s) 185
HhaI GCGC 1 cut(s) 12
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 2 cut(s) 184, 226
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HpaII CCGG 1 cut(s) 98
HphI GGTGA 3 cut(s) 82, 140, 226
Hpy166II GTNNAC 1 cut(s) 235
Hpy188III TCNNGA 2 cut(s) 71, 160
Hpy8I GTNNAC 1 cut(s) 235
Hpy99I CGWCG 2 cut(s) 111, 179
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 2 cut(s) 59, 214
HpyCH4IV ACGT 2 cut(s) 136, 165
HpyF3I CTNAG 1 cut(s) 192
HpySE526I ACGT 2 cut(s) 136, 165
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 2 cut(s) 184, 226
HspAI GCGC 1 cut(s) 10
KroI GCCGGC 1 cut(s) 97
KroNI GCCGGC 1 cut(s) 99
Ksp22I TGATCA 1 cut(s) 168
Kzo9I GATC 1 cut(s) 168
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 3 cut(s) 68, 95, 111
LweI GCATC 1 cut(s) 96
MaeII ACGT 2 cut(s) 136, 165
MaeIII GTNAC 1 cut(s) 214
MalI GATC 1 cut(s) 170
MboI GATC 1 cut(s) 168
MboII GAAGA 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 147
MnlI CCTC 6 cut(s) 14, 35, 116, 119, 167, 240
MroNI GCCGGC 1 cut(s) 97
MslI CAYNNNNRTG 1 cut(s) 227
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
MvnI CGCG 2 cut(s) 12, 72
NaeI GCCGGC 1 cut(s) 99
NdeII GATC 1 cut(s) 168
NgoMIV GCCGGC 1 cut(s) 97
NlaIII CATG 2 cut(s) 184, 226
NlaIV GGNNCC 2 cut(s) 46, 56
NmuCI GTSAC 1 cut(s) 214
NruI TCGCGA 1 cut(s) 72
PaeR7I CTCGAG 1 cut(s) 158
PcsI WCGNNNNNNNCGW 2 cut(s) 115, 171
PdiI GCCGGC 1 cut(s) 99
PkrI GCNGC 1 cut(s) 206
PmaCI CACGTG 1 cut(s) 137
PmlI CACGTG 1 cut(s) 137
Ppu21I YACGTR 1 cut(s) 137
PpuMI RGGWCCY 1 cut(s) 64
Psp5II RGGWCCY 1 cut(s) 64
Psp6I CCWGG 1 cut(s) 81
PspCI CACGTG 1 cut(s) 137
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 2 cut(s) 46, 56
PspPI GGNCC 1 cut(s) 64
PspPPI RGGWCCY 1 cut(s) 64
RruI TCGCGA 1 cut(s) 72
RseI CAYNNNNRTG 1 cut(s) 227
SatI GCNGC 1 cut(s) 205
Sau3AI GATC 1 cut(s) 168
Sau96I GGNCC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 1 cut(s) 147
SetI ASST 6 cut(s) 66, 130, 139, 168, 188, 251
SfaNI GCATC 1 cut(s) 96
Sfr274I CTCGAG 1 cut(s) 158
SinI GGWCC 1 cut(s) 64
SlaI CTCGAG 1 cut(s) 158
SmiMI CAYNNNNRTG 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
SsiI CCGC 2 cut(s) 12, 205
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 59, 214
TaiI ACGT 2 cut(s) 139, 168
TaqI TCGA 1 cut(s) 159
TauI GCSGC 1 cut(s) 207
TseFI GTSAC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 64
XagI CCTNNNNNAGG 1 cut(s) 244
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
XhoI CTCGAG 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.