RchiOBHm_Chr6g0277791

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0015702
Physical Location & Seq
Forward (+)
40336404 .. 40339315
2912 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24922

Sequence Viewer

Length: 342 bp
ATGAAGTTTCTGAAACCCTTTTGGAGAAAGTTGAGAACTTTGGCCTTGTATTGCTCATTTGCTATCTGGGTTTTCTTCTCTGGCCAAATCAAGGGTTTTTCAATTGTAGGAAGGTTTCTGTTGCTTGAGGTCTCTCCCTGCGAAAAGAGAGTCGGTCTCAGAGATCTTCGAGATTCTAGGCGTGGAAATGGAGGCGCAGATCGACATCGTAAGGTCTTCCGCGAAAGCATCCAGGGCATAAAGCCGGTGACGGCTCGGTTCTCAAGGTCGGCGAGGAGAAGGAGATCAGAAAGCAGGGATATTGAAGAAGGAACTCCTCACTATATCCCAAGCTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.26

Weight (kDa)

11.47

Isoelectric Point (pI)

65.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 222
AciI CCGC 1 cut(s) 220
AcoI YGGCCR 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 2 cut(s) 102, 305
AjnI CCWGG 1 cut(s) 231
AluBI AGCT 1 cut(s) 333
AluI AGCT 1 cut(s) 333
Alw26I GTCTC 2 cut(s) 136, 161
AoxI GGCC 2 cut(s) 42, 82
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
AspLEI GCGC 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 259
BalI TGGCCA 1 cut(s) 84
BbsI GAAGAC 1 cut(s) 208
BceAI ACGGC 1 cut(s) 267
BciT130I CCWGG 1 cut(s) 233
BcoDI GTCTC 2 cut(s) 136, 161
BfaI CTAG 1 cut(s) 177
BglII AGATCT 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 233
BmrFI CCNGG 1 cut(s) 233
BmsI GCATC 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 208
BplI GAGNNNNNCTC 2 cut(s) 141, 173
BpuEI CTTGAG 2 cut(s) 146, 247
BsaBI GATNNNNATC 1 cut(s) 204
BsaI GGTCTC 2 cut(s) 136, 161
BsaJI CCNNGG 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse118I RCCGGY 1 cut(s) 244
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 1 cut(s) 232
BseGI GGATG 1 cut(s) 228
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 172
BseRI GAGGAG 2 cut(s) 289, 306
Bsh1236I CGCG 1 cut(s) 222
BshFI GGCC 2 cut(s) 44, 84
BsiSI CCGG 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 2 cut(s) 136, 161
BsnI GGCC 2 cut(s) 44, 84
Bso31I GGTCTC 2 cut(s) 136, 161
Bsp143I GATC 3 cut(s) 163, 199, 284
BspACI CCGC 1 cut(s) 220
BspANI GGCC 2 cut(s) 44, 84
BspCNI CTCAG 1 cut(s) 171
BspFNI CGCG 1 cut(s) 222
BspTNI GGTCTC 2 cut(s) 136, 161
BsrFI RCCGGY 1 cut(s) 244
BssAI RCCGGY 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 3 cut(s) 163, 199, 284
Bst2UI CCWGG 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 158
BstF5I GGATG 1 cut(s) 228
BstFNI CGCG 1 cut(s) 222
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 3 cut(s) 166, 202, 287
BstMAI GTCTC 2 cut(s) 136, 161
BstMBI GATC 3 cut(s) 163, 199, 284
BstMWI GCNNNNNNNGC 1 cut(s) 234
BstNI CCWGG 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 231
BstUI CGCG 1 cut(s) 222
BstV2I GAAGAC 1 cut(s) 208
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BsuRI GGCC 2 cut(s) 44, 84
BtsCI GGATG 1 cut(s) 228
CfoI GCGC 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 244
CviJI RGCY 5 cut(s) 44, 84, 244, 254, 333
CviKI_1 RGCY 5 cut(s) 44, 84, 244, 254, 333
DdeI CTNAG 1 cut(s) 158
DpnI GATC 3 cut(s) 165, 201, 286
DpnII GATC 3 cut(s) 163, 199, 284
EaeI YGGCCR 1 cut(s) 82
Eco31I GGTCTC 2 cut(s) 136, 161
EcoRII CCWGG 1 cut(s) 231
FaiI YATR 2 cut(s) 239, 324
FokI GGATG 1 cut(s) 215
FspBI CTAG 1 cut(s) 177
GlaI GCGC 1 cut(s) 196
HaeIII GGCC 2 cut(s) 44, 84
HapII CCGG 1 cut(s) 245
HhaI GCGC 1 cut(s) 197
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HindIII AAGCTT 1 cut(s) 331
HinfI GANTC 2 cut(s) 150, 173
HpaII CCGG 1 cut(s) 245
HphI GGTGA 1 cut(s) 259
Hpy188I TCNGA 3 cut(s) 12, 161, 289
Hpy188III TCNNGA 1 cut(s) 170
HpyAV CCTTC 3 cut(s) 105, 273, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 234
HpyF3I CTNAG 1 cut(s) 158
HspAI GCGC 1 cut(s) 195
Kzo9I GATC 3 cut(s) 163, 199, 284
LpnPI CCDG 7 cut(s) 52, 66, 151, 218, 245, 258, 280
LweI GCATC 1 cut(s) 237
MaeI CTAG 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 247
MalI GATC 3 cut(s) 165, 201, 286
MboI GATC 3 cut(s) 163, 199, 284
MboII GAAGA 4 cut(s) 67, 158, 208, 317
MfeI CAATTG 1 cut(s) 102
MflI RGATCY 1 cut(s) 163
MlsI TGGCCA 1 cut(s) 84
MluCI AATT 1 cut(s) 102
MluNI TGGCCA 1 cut(s) 84
MlyI GAGTC 1 cut(s) 159
MnlI CCTC 5 cut(s) 121, 185, 267, 327, 330
Mox20I TGGCCA 1 cut(s) 84
MscI TGGCCA 1 cut(s) 84
Msp20I TGGCCA 1 cut(s) 84
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 233
MunI CAATTG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 233
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 234
NdeII GATC 3 cut(s) 163, 199, 284
NmuCI GTSAC 1 cut(s) 247
PfeI GAWTC 1 cut(s) 173
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PsuI RGATCY 1 cut(s) 163
Sau3AI GATC 3 cut(s) 163, 199, 284
SchI GAGTC 1 cut(s) 159
ScrFI CCNGG 1 cut(s) 233
SetI ASST 6 cut(s) 116, 132, 216, 269, 335, 341
SfaNI GCATC 1 cut(s) 237
SmlI CTYRAG 3 cut(s) 125, 262, 334
SmoI CTYRAG 3 cut(s) 125, 262, 334
Sse9I AATT 1 cut(s) 102
SsiI CCGC 1 cut(s) 220
SspMI CTAG 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 231
TaqI TCGA 2 cut(s) 169, 202
TaqII GACCGA 1 cut(s) 143
TasI AATT 1 cut(s) 102
TfiI GAWTC 1 cut(s) 173
TseFI GTSAC 1 cut(s) 247
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 1 cut(s) 17
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.