Prupe.3G163200_v2.0.a1

Histone H4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0015702
Physical Location & Seq
Forward (+)
18239737 .. 18240027
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G163200.1

Sequence Viewer

Length: 291 bp
ATGTCTGGCCGTGGAAAGGGAGGCAAGGGCCTGGGCAAGGGCGGAGCTAAACGGCACCGTAAGGTCCTTAGAGACAACATCCAGGGCATCTCCAAGCCTGCGATTCGAAAGGCTCGCCAGAAGAGGATGCAAATCGCCGCTGGTCACGAGCTGACGACGATCCATCCAGATATTCTCTGCCAAGGCATTTTGAGTTTTTTTGAACCAGCTCACAAGCAACAGAGTTGGGCTTCGTGGCCTCAGGCAAGATTGAACCCAGATGAGATCCCATGGTCTGAGAGCGAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
CENP-T_C

Protein Analysis

97

Amino Acids

10.67

Weight (kDa)

10.49

Isoelectric Point (pI)

51.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 54
AciI CCGC 2 cut(s) 42, 138
AclWI GGATC 2 cut(s) 154, 259
AcoI YGGCCR 1 cut(s) 7
AfiI CCNNNNNNNGG 2 cut(s) 16, 37
AgsI TTSAA 2 cut(s) 203, 253
AjnI CCWGG 2 cut(s) 30, 81
AluBI AGCT 4 cut(s) 47, 151, 209, 288
AluI AGCT 4 cut(s) 47, 151, 209, 288
Alw26I GTCTC 1 cut(s) 66
AlwI GGATC 2 cut(s) 154, 259
AoxI GGCC 3 cut(s) 7, 28, 236
AspS9I GGNCC 2 cut(s) 28, 64
AsuII TTCGAA 1 cut(s) 106
AvaII GGWCC 1 cut(s) 64
AxyI CCTNAGG 1 cut(s) 240
BanI GGYRCC 1 cut(s) 54
BauI CACGAG 1 cut(s) 146
BccI CCATC 1 cut(s) 171
BceAI ACGGC 1 cut(s) 68
BciT130I CCWGG 2 cut(s) 32, 83
BcoDI GTCTC 1 cut(s) 66
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 2 cut(s) 32, 83
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 2 cut(s) 28, 64
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 2 cut(s) 32, 83
BmsI GCATC 2 cut(s) 96, 117
Bpu14I TTCGAA 1 cut(s) 106
BsaBI GATNNNNATC 1 cut(s) 131
BsaJI CCNNGG 5 cut(s) 10, 31, 82, 181, 269
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 37
Bse21I CCTNAGG 1 cut(s) 240
Bse8I GATNNNNATC 1 cut(s) 131
BseBI CCWGG 2 cut(s) 32, 83
BseDI CCNNGG 5 cut(s) 10, 31, 82, 181, 269
BseGI GGATG 3 cut(s) 78, 132, 163
BseJI GATNNNNATC 1 cut(s) 131
BseLI CCNNNNNNNGG 2 cut(s) 16, 37
BseMII CTCAG 2 cut(s) 254, 267
BshFI GGCC 3 cut(s) 9, 30, 238
BshNI GGYRCC 1 cut(s) 54
BslI CCNNNNNNNGG 2 cut(s) 16, 37
BsmAI GTCTC 1 cut(s) 66
BsnI GGCC 3 cut(s) 9, 30, 238
Bsp119I TTCGAA 1 cut(s) 106
Bsp143I GATC 2 cut(s) 159, 264
Bsp19I CCATGG 1 cut(s) 269
BspACI CCGC 2 cut(s) 42, 138
BspANI GGCC 3 cut(s) 9, 30, 238
BspCNI CTCAG 2 cut(s) 253, 268
BspLI GGNNCC 1 cut(s) 56
BspPI GGATC 2 cut(s) 154, 259
BspT104I TTCGAA 1 cut(s) 106
BspT107I GGYRCC 1 cut(s) 54
BssECI CCNNGG 5 cut(s) 10, 31, 82, 181, 269
BssMI GATC 2 cut(s) 159, 264
BssSI CACGAG 1 cut(s) 146
BssT1I CCWWGG 2 cut(s) 181, 269
Bst2BI CACGAG 1 cut(s) 146
Bst2UI CCWGG 2 cut(s) 32, 83
Bst4CI ACNGT 1 cut(s) 59
Bst6I CTCTTC 1 cut(s) 116
BstBI TTCGAA 1 cut(s) 106
BstC8I GCNNGC 2 cut(s) 99, 115
BstDEI CTNAG 3 cut(s) 68, 240, 276
BstDSI CCRYGG 2 cut(s) 10, 269
BstENI CCTNNNNNAGG 1 cut(s) 35
BstF5I GGATG 3 cut(s) 78, 132, 163
BstKTI GATC 2 cut(s) 162, 267
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 2 cut(s) 159, 264
BstNI CCWGG 2 cut(s) 32, 83
BstSCI CCNGG 2 cut(s) 30, 81
BstX2I RGATCY 1 cut(s) 264
BstYI RGATCY 1 cut(s) 264
Bsu36I CCTNAGG 1 cut(s) 240
BsuRI GGCC 3 cut(s) 9, 30, 238
BtgI CCRYGG 2 cut(s) 10, 269
BtsCI GGATG 3 cut(s) 78, 132, 163
Cac8I GCNNGC 2 cut(s) 99, 115
Cfr13I GGNCC 2 cut(s) 28, 64
CviAII CATG 1 cut(s) 270
DdeI CTNAG 3 cut(s) 68, 240, 276
DpnI GATC 2 cut(s) 161, 266
DpnII GATC 2 cut(s) 159, 264
EaeI YGGCCR 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
EciI GGCGGA 1 cut(s) 57
Eco130I CCWWGG 2 cut(s) 181, 269
Eco47I GGWCC 1 cut(s) 64
Eco81I CCTNAGG 1 cut(s) 240
EcoNI CCTNNNNNAGG 1 cut(s) 35
EcoO109I RGGNCCY 2 cut(s) 28, 64
EcoRII CCWGG 2 cut(s) 30, 81
EcoT14I CCWWGG 2 cut(s) 181, 269
ErhI CCWWGG 2 cut(s) 181, 269
FaeI CATG 1 cut(s) 273
FaiI YATR 1 cut(s) 271
FatI CATG 1 cut(s) 269
Fnu4HI GCNGC 1 cut(s) 138
FokI GGATG 3 cut(s) 65, 139, 150
Fsp4HI GCNGC 1 cut(s) 138
GluI GCNGC 1 cut(s) 138
HaeIII GGCC 3 cut(s) 9, 30, 238
Hin1II CATG 1 cut(s) 273
HinfI GANTC 1 cut(s) 103
Hpy188I TCNGA 1 cut(s) 277
Hpy188III TCNNGA 2 cut(s) 146, 167
Hpy99I CGWCG 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4V TGCA 1 cut(s) 130
HpyF3I CTNAG 3 cut(s) 68, 240, 276
Hsp92II CATG 1 cut(s) 273
Kzo9I GATC 2 cut(s) 159, 264
LmnI GCTCC 1 cut(s) 44
LweI GCATC 2 cut(s) 96, 117
MaeIII GTNAC 1 cut(s) 143
MalI GATC 2 cut(s) 161, 266
MboI GATC 2 cut(s) 159, 264
MboII GAAGA 1 cut(s) 133
MflI RGATCY 1 cut(s) 264
MnlI CCTC 3 cut(s) 14, 117, 249
MspA1I CMGCKG 1 cut(s) 140
MspR9I CCNGG 2 cut(s) 32, 83
MvaI CCWGG 2 cut(s) 32, 83
NcoI CCATGG 1 cut(s) 269
NdeII GATC 2 cut(s) 159, 264
NlaIII CATG 1 cut(s) 273
NlaIV GGNNCC 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 143
NspV TTCGAA 1 cut(s) 106
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 1 cut(s) 139
PpuMI RGGWCCY 1 cut(s) 64
Psp5II RGGWCCY 1 cut(s) 64
Psp6I CCWGG 2 cut(s) 30, 81
PspGI CCWGG 2 cut(s) 30, 81
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 2 cut(s) 28, 64
PspPPI RGGWCCY 1 cut(s) 64
PsuI RGATCY 1 cut(s) 264
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 2 cut(s) 159, 264
Sau96I GGNCC 2 cut(s) 28, 64
ScrFI CCNGG 2 cut(s) 32, 83
SetI ASST 5 cut(s) 49, 66, 153, 211, 290
SfaNI GCATC 2 cut(s) 96, 117
SfuI TTCGAA 1 cut(s) 106
SinI GGWCC 1 cut(s) 64
SsiI CCGC 2 cut(s) 42, 138
StyD4I CCNGG 2 cut(s) 30, 81
StyI CCWWGG 2 cut(s) 181, 269
TaaI ACNGT 1 cut(s) 59
TaqI TCGA 1 cut(s) 106
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 1 cut(s) 103
TseFI GTSAC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 64
XagI CCTNNNNNAGG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.