MD03G1111700.v1.1

Alpha/beta hydrolase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
9735069 .. 9738034
2966 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1111700.v1.1.491

Sequence Viewer

Length: 1143 bp
ATGTCGGAGCCGGACACTGGACCCGAATTCTACGCGGGCCGGCCCAGGCCGTGGCGACCCAATGATCTGGTAAACGGGGGCGGAAGCGGCGTGGGAAGGGCAGCGTACGGCGTCCCATCGGGCGGTGTGGCCGTGTGGCCCAATGCGAGCGAGCCGGTGCCGCCGGAGACGCTGGGGGGACTTGTGCGGGAGTTCTCGAAAGCGGCGGCGGAGATTGCCGTGGAGTTCGGGAAAGGGTGCAGGGATATAGTGCGGCAGAGCCTAGGGAATCGGGACTCGGTGTTGGGGAGGAGCTTGGGGAAGGTAAGGGAGTCGTACTTGGGGAAGAGAGTGACGCAGCTTCGCAGGAAATTGGGGATCGTGAACGAGTATCTGCCGGAAGATAAGGATCCGATTCATGCTTGGTCGGTGATTGCCTGCGTCACGATTCTTGCTTTTGCAGTGGTGTATGTGAATGTCGAAACTACTCCTTCCGGTCCTGCCCCGGAAGTAAAGAAGATATACATTCATCCTCCGAGTGCTGCCCGCGTAATGCTTCCAGATGGTAGATTCATAGCATACAAGGAGCAAGGCGTTCCGGCTGACAGAGCTAGGTTTTCAATCATTGCTCCACATTCTTTCCTTTCGTCCCGCCTCGCAGGAATACCTGGACTCAAGGCTTCCCTGTTGGAAGAGTTTGGCGTTCGCTTATTGACATATGATCTTCCTGGTTTTGGAGAGAGTGACCCTCACCCCAACAGAAACCTTGAATCTTCTGCAATGGATATGTTGCTCTTAGCTGATGCTGTTGGTGTGAATGACAAGTTTTGGGTTGTGGGATACTCGAGCGGAGGCTTGCATGCTTGGGCAGCGCTCAGATACATTCCTGATAGACTTGCAGGTGCAGCCATGTTTGCTCCAATGGTTAATCCGTATGATTCATTCATGAATAGGGAAGAGAGGCGCAGAACCTGGGAGAAGTGGACGCGAAGCAGAAAATTTATGTACTTTTTGGCTAGGAGGTTTCCTAGTTTTCTTTCTTACTTCTATCACAGAAGCTTCTTATCTGGAAAGCATGGACAAATTGATAGATGGCTGTCACTATCTCTGGGAAAGAGGGTGAGGATCGTTGTTCATCTTTTTGTTTACTTGATAAAGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

381

Amino Acids

42.3

Weight (kDa)

9.75

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 218 - 315 4.1e-11 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 220 - 340 7.6e-09 Alpha/beta hydrolase family
Hydrolase_4 PF12146 222 - 308 2.2e-07 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 869
Acc36I ACCTGC 1 cut(s) 869
AccB1I GGYRCC 1 cut(s) 157
AccB7I CCANNNNNTGG 1 cut(s) 51
AccBSI CCGCTC 1 cut(s) 828
AccII CGCG 3 cut(s) 35, 528, 967
AclWI GGATC 4 cut(s) 365, 383, 396, 1112
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 2 cut(s) 26, 977
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 3 cut(s) 107, 317, 986
AfeI AGCGCT 1 cut(s) 852
AfiI CCNNNNNNNGG 4 cut(s) 17, 51, 122, 713
AgsI TTSAA 2 cut(s) 600, 749
AjnI CCWGG 4 cut(s) 44, 646, 706, 950
AluBI AGCT 6 cut(s) 294, 340, 590, 779, 1038, 1138
AluI AGCT 6 cut(s) 294, 340, 590, 779, 1038, 1138
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 4 cut(s) 365, 383, 396, 1112
AlwNI CAGNNNCTG 1 cut(s) 951
Ama87I CYCGRG 1 cut(s) 823
Aor51HI AGCGCT 1 cut(s) 852
AoxI GGCC 5 cut(s) 37, 41, 47, 129, 137
ApeKI GCWGC 5 cut(s) 101, 337, 521, 848, 884
ApoI RAATTY 2 cut(s) 26, 977
AspA2I CCTAGG 1 cut(s) 262
AspLEI GCGC 2 cut(s) 853, 945
AspS9I GGNCC 5 cut(s) 20, 37, 42, 138, 476
AsuC2I CCSGG 1 cut(s) 485
AsuHPI GGTGA 3 cut(s) 421, 722, 1111
AvaI CYCGRG 1 cut(s) 823
AvaII GGWCC 2 cut(s) 20, 476
AvrII CCTAGG 1 cut(s) 262
BamHI GGATCC 1 cut(s) 388
BanI GGYRCC 1 cut(s) 157
BbvI GCAGC 5 cut(s) 113, 349, 508, 860, 896
BccI CCATC 3 cut(s) 124, 536, 1065
BceAI ACGGC 4 cut(s) 34, 116, 124, 203
BciT130I CCWGG 4 cut(s) 46, 648, 708, 952
BciVI GTATCC 1 cut(s) 812
BcnI CCSGG 1 cut(s) 485
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 4 cut(s) 263, 591, 996, 1008
BfoI RGCGCY 1 cut(s) 854
BfuAI ACCTGC 1 cut(s) 869
BfuI GTATCC 1 cut(s) 812
BlnI CCTAGG 1 cut(s) 262
Bme1390I CCNGG 5 cut(s) 46, 485, 648, 708, 952
Bme18I GGWCC 2 cut(s) 20, 476
BmeT110I CYCGRG 1 cut(s) 823
BmgT120I GGNCC 5 cut(s) 20, 37, 42, 138, 476
BmiI GGNNCC 4 cut(s) 9, 22, 159, 390
BmrFI CCNGG 5 cut(s) 46, 485, 648, 708, 952
BmsI GCATC 1 cut(s) 772
BplI GAGNNNNNCTC 2 cut(s) 712, 744
BpuEI CTTGAG 1 cut(s) 638
BpuMI CCSGG 1 cut(s) 485
BsaBI GATNNNNATC 1 cut(s) 387
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 6 cut(s) 44, 50, 219, 262, 483, 951
BsaWI WCCGGW 1 cut(s) 473
Bsc4I CCNNNNNNNGG 4 cut(s) 17, 51, 122, 713
Bse118I RCCGGY 2 cut(s) 39, 154
Bse1I ACTGG 1 cut(s) 22
Bse3DI GCAATG 2 cut(s) 603, 765
Bse8I GATNNNNATC 1 cut(s) 387
BseBI CCWGG 4 cut(s) 46, 648, 708, 952
BseDI CCNNGG 6 cut(s) 44, 50, 219, 262, 483, 951
BseGI GGATG 1 cut(s) 508
BseJI GATNNNNATC 1 cut(s) 387
BseLI CCNNNNNNNGG 4 cut(s) 17, 51, 122, 713
BseMI GCAATG 2 cut(s) 603, 765
BseMII CTCAG 1 cut(s) 868
BseNI ACTGG 1 cut(s) 22
BseRI GAGGAG 1 cut(s) 304
BseXI GCAGC 5 cut(s) 113, 349, 508, 860, 896
BseYI CCCAGC 1 cut(s) 172
BsgI GTGCAG 2 cut(s) 259, 903
Bsh1236I CGCG 3 cut(s) 35, 528, 967
BshFI GGCC 5 cut(s) 39, 43, 49, 131, 139
BshNI GGYRCC 1 cut(s) 157
BsiHKCI CYCGRG 1 cut(s) 823
BsiSI CCGG 8 cut(s) 11, 40, 155, 164, 377, 474, 485, 578
BsiWI CGTACG 1 cut(s) 105
BslFI GGGAC 4 cut(s) 98, 192, 287, 613
BslI CCNNNNNNNGG 4 cut(s) 17, 51, 122, 713
BsmAI GTCTC 1 cut(s) 161
BsmBI CGTCTC 1 cut(s) 161
BsmFI GGGAC 4 cut(s) 98, 192, 287, 613
BsnI GGCC 5 cut(s) 39, 43, 49, 131, 139
BsoBI CYCGRG 1 cut(s) 823
Bsp143I GATC 5 cut(s) 64, 357, 388, 700, 1104
BspANI GGCC 5 cut(s) 39, 43, 49, 131, 139
BspCNI CTCAG 1 cut(s) 867
BspFNI CGCG 3 cut(s) 35, 528, 967
BspHI TCATGA 1 cut(s) 924
BspLI GGNNCC 4 cut(s) 9, 22, 159, 390
BspMI ACCTGC 1 cut(s) 869
BspPI GGATC 4 cut(s) 365, 383, 396, 1112
BspT107I GGYRCC 1 cut(s) 157
BsrBI CCGCTC 1 cut(s) 828
BsrDI GCAATG 2 cut(s) 603, 765
BsrFI RCCGGY 2 cut(s) 39, 154
BsrI ACTGG 1 cut(s) 22
BssAI RCCGGY 2 cut(s) 39, 154
BssECI CCNNGG 6 cut(s) 44, 50, 219, 262, 483, 951
BssMI GATC 5 cut(s) 64, 357, 388, 700, 1104
BssNI GRCGYC 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 262
Bst2UI CCWGG 4 cut(s) 46, 648, 708, 952
Bst6I CTCTTC 3 cut(s) 320, 666, 930
BstACI GRCGYC 1 cut(s) 111
BstC8I GCNNGC 8 cut(s) 37, 41, 148, 152, 418, 526, 836, 840
BstDEI CTNAG 2 cut(s) 775, 854
BstDSI CCRYGG 2 cut(s) 50, 219
BstF5I GGATG 1 cut(s) 508
BstFNI CGCG 3 cut(s) 35, 528, 967
BstH2I RGCGCY 1 cut(s) 854
BstHHI GCGC 2 cut(s) 853, 945
BstKTI GATC 5 cut(s) 67, 360, 391, 703, 1107
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 5 cut(s) 64, 357, 388, 700, 1104
BstMWI GCNNNNNNNGC 8 cut(s) 87, 160, 169, 215, 587, 848, 884, 893
BstNI CCWGG 4 cut(s) 46, 648, 708, 952
BstNSI RCATGY 1 cut(s) 842
BstSCI CCNGG 5 cut(s) 44, 483, 646, 706, 950
BstUI CGCG 3 cut(s) 35, 528, 967
BstV1I GCAGC 5 cut(s) 113, 349, 508, 860, 896
BstX2I RGATCY 1 cut(s) 388
BstXI CCANNNNNNTGG 1 cut(s) 67
BstYI RGATCY 1 cut(s) 388
BsuI GTATCC 1 cut(s) 812
BsuRI GGCC 5 cut(s) 39, 43, 49, 131, 139
BtgI CCRYGG 2 cut(s) 50, 219
BtsCI GGATG 1 cut(s) 508
BtsI GCAGTG 1 cut(s) 447
BtsIMutI CAGTG 2 cut(s) 15, 447
BveI ACCTGC 1 cut(s) 869
Cac8I GCNNGC 8 cut(s) 37, 41, 148, 152, 418, 526, 836, 840
CaiI CAGNNNCTG 1 cut(s) 951
CciI TCATGA 1 cut(s) 924
CfoI GCGC 2 cut(s) 853, 945
Cfr10I RCCGGY 2 cut(s) 39, 154
Cfr13I GGNCC 5 cut(s) 20, 37, 42, 138, 476
CseI GACGC 5 cut(s) 100, 178, 343, 409, 973
Csp6I GTAC 3 cut(s) 106, 316, 985
CviAII CATG 5 cut(s) 398, 839, 889, 925, 1055
CviQI GTAC 3 cut(s) 106, 316, 985
DdeI CTNAG 2 cut(s) 775, 854
DpnI GATC 5 cut(s) 66, 359, 390, 702, 1106
DpnII GATC 5 cut(s) 64, 357, 388, 700, 1104
EaeI YGGCCR 1 cut(s) 129
Eam1104I CTCTTC 3 cut(s) 320, 666, 930
EarI CTCTTC 3 cut(s) 320, 666, 930
EciI GGCGGA 2 cut(s) 96, 224
Eco130I CCWWGG 1 cut(s) 262
Eco47I GGWCC 2 cut(s) 20, 476
Eco47III AGCGCT 1 cut(s) 852
Eco88I CYCGRG 1 cut(s) 823
EcoRI GAATTC 1 cut(s) 26
EcoRII CCWGG 4 cut(s) 44, 646, 706, 950
EcoT14I CCWWGG 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 262
Esp3I CGTCTC 1 cut(s) 161
FaeI CATG 5 cut(s) 401, 842, 892, 928, 1058
FaqI GGGAC 4 cut(s) 98, 192, 287, 613
FatI CATG 5 cut(s) 397, 838, 888, 924, 1054
FauI CCCGC 4 cut(s) 28, 180, 533, 638
FauNDI CATATG 1 cut(s) 697
FokI GGATG 1 cut(s) 495
FseI GGCCGGCC 1 cut(s) 43
FspBI CTAG 4 cut(s) 263, 591, 996, 1008
GlaI GCGC 2 cut(s) 852, 944
GsaI CCCAGC 1 cut(s) 176
HaeII RGCGCY 1 cut(s) 854
HaeIII GGCC 5 cut(s) 39, 43, 49, 131, 139
HapII CCGG 8 cut(s) 11, 40, 155, 164, 377, 474, 485, 578
HgaI GACGC 5 cut(s) 100, 178, 343, 409, 973
HhaI GCGC 2 cut(s) 853, 945
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 5 cut(s) 401, 842, 892, 928, 1058
Hin6I GCGC 2 cut(s) 851, 943
HinP1I GCGC 2 cut(s) 851, 943
HindIII AAGCTT 1 cut(s) 1036
HinfI GANTC 9 cut(s) 268, 275, 311, 394, 427, 549, 651, 749, 917
HpaII CCGG 8 cut(s) 11, 40, 155, 164, 377, 474, 485, 578
HphI GGTGA 3 cut(s) 421, 722, 1111
Hpy166II GTNNAC 4 cut(s) 73, 364, 963, 1126
Hpy188I TCNGA 4 cut(s) 7, 393, 516, 857
Hpy188III TCNNGA 9 cut(s) 196, 229, 272, 361, 424, 539, 866, 925, 1047
Hpy8I GTNNAC 4 cut(s) 73, 364, 963, 1126
HpyAV CCTTC 3 cut(s) 90, 295, 480
HpyCH4V TGCA 6 cut(s) 240, 440, 758, 838, 878, 884
HpyF10VI GCNNNNNNNGC 8 cut(s) 87, 160, 169, 215, 587, 848, 884, 893
HpyF3I CTNAG 2 cut(s) 775, 854
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 5 cut(s) 401, 842, 892, 928, 1058
HspAI GCGC 2 cut(s) 851, 943
KroI GCCGGC 1 cut(s) 39
KroNI GCCGGC 1 cut(s) 41
Kzo9I GATC 5 cut(s) 64, 357, 388, 700, 1104
LmnI GCTCC 5 cut(s) 7, 291, 565, 613, 901
Lsp1109I GCAGC 5 cut(s) 113, 349, 508, 860, 896
LweI GCATC 1 cut(s) 772
MaeI CTAG 4 cut(s) 263, 591, 996, 1008
MaeIII GTNAC 4 cut(s) 331, 421, 722, 1077
MalI GATC 5 cut(s) 66, 359, 390, 702, 1106
MbiI CCGCTC 1 cut(s) 828
MboI GATC 5 cut(s) 64, 357, 388, 700, 1104
MboII GAAGA 7 cut(s) 337, 392, 508, 683, 695, 744, 947
MflI RGATCY 1 cut(s) 388
MluCI AATT 4 cut(s) 26, 350, 977, 1062
MlyI GAGTC 3 cut(s) 269, 320, 645
MmeI TCCRAC 1 cut(s) 648
MnlI CCTC 9 cut(s) 282, 522, 644, 738, 824, 933, 993, 1089, 1095
MroNI GCCGGC 1 cut(s) 39
MseI TTAA 1 cut(s) 906
MspI CCGG 8 cut(s) 11, 40, 155, 164, 377, 474, 485, 578
MspR9I CCNGG 5 cut(s) 46, 485, 648, 708, 952
MvaI CCWGG 4 cut(s) 46, 648, 708, 952
MvnI CGCG 3 cut(s) 35, 528, 967
MwoI GCNNNNNNNGC 8 cut(s) 87, 160, 169, 215, 587, 848, 884, 893
NaeI GCCGGC 1 cut(s) 41
NciI CCSGG 1 cut(s) 485
NdeI CATATG 1 cut(s) 697
NdeII GATC 5 cut(s) 64, 357, 388, 700, 1104
NgoMIV GCCGGC 1 cut(s) 39
NlaIII CATG 5 cut(s) 401, 842, 892, 928, 1058
NlaIV GGNNCC 4 cut(s) 9, 22, 159, 390
NmuCI GTSAC 4 cut(s) 331, 421, 722, 1077
NspI RCATGY 1 cut(s) 842
PaeI GCATGC 1 cut(s) 842
PaeR7I CTCGAG 1 cut(s) 823
PagI TCATGA 1 cut(s) 924
PaqCI CACCTGC 1 cut(s) 869
PdiI GCCGGC 1 cut(s) 41
PfeI GAWTC 6 cut(s) 268, 394, 427, 549, 749, 917
Pfl23II CGTACG 1 cut(s) 105
PflMI CCANNNNNTGG 1 cut(s) 51
PleI GAGTC 3 cut(s) 269, 319, 645
PpsI GAGTC 3 cut(s) 269, 319, 645
Psp6I CCWGG 4 cut(s) 44, 646, 706, 950
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 4 cut(s) 44, 646, 706, 950
PspLI CGTACG 1 cut(s) 105
PspN4I GGNNCC 4 cut(s) 9, 22, 159, 390
PspPI GGNCC 5 cut(s) 20, 37, 42, 138, 476
PspXI VCTCGAGB 1 cut(s) 823
PstNI CAGNNNCTG 1 cut(s) 951
PsuI RGATCY 1 cut(s) 388
RigI GGCCGGCC 1 cut(s) 43
RsaI GTAC 3 cut(s) 107, 317, 986
RsaNI GTAC 3 cut(s) 106, 316, 985
SaqAI TTAA 1 cut(s) 906
Sau3AI GATC 5 cut(s) 64, 357, 388, 700, 1104
Sau96I GGNCC 5 cut(s) 20, 37, 42, 138, 476
SchI GAGTC 3 cut(s) 269, 320, 645
ScrFI CCNGG 5 cut(s) 46, 485, 648, 708, 952
SfaNI GCATC 1 cut(s) 772
Sfr274I CTCGAG 1 cut(s) 823
SinI GGWCC 2 cut(s) 20, 476
SlaI CTCGAG 1 cut(s) 823
SmlI CTYRAG 2 cut(s) 653, 823
SmoI CTYRAG 2 cut(s) 653, 823
SphI GCATGC 1 cut(s) 842
Sse9I AATT 4 cut(s) 26, 350, 977, 1062
SspMI CTAG 4 cut(s) 263, 591, 996, 1008
StyD4I CCNGG 5 cut(s) 44, 483, 646, 706, 950
StyI CCWWGG 1 cut(s) 262
TaqI TCGA 3 cut(s) 197, 459, 824
TasI AATT 4 cut(s) 26, 350, 977, 1062
TatI WGTACW 1 cut(s) 984
TauI GCSGC 5 cut(s) 90, 163, 206, 209, 256
TfiI GAWTC 6 cut(s) 268, 394, 427, 549, 749, 917
Tru1I TTAA 1 cut(s) 906
Tru9I TTAA 1 cut(s) 906
TscAI CASTG 2 cut(s) 22, 447
TseFI GTSAC 4 cut(s) 331, 421, 722, 1077
TseI GCWGC 5 cut(s) 101, 337, 521, 848, 884
Tsp45I GTSAC 4 cut(s) 331, 421, 722, 1077
TspDTI ATGAA 7 cut(s) 386, 497, 541, 909, 913, 941, 1103
TspGWI ACGGA 1 cut(s) 900
TspRI CASTG 2 cut(s) 22, 447
Van91I CCANNNNNTGG 1 cut(s) 51
VpaK11BI GGWCC 2 cut(s) 20, 476
XapI RAATTY 2 cut(s) 26, 977
XceI RCATGY 1 cut(s) 842
XhoI CTCGAG 1 cut(s) 823
XmaJI CCTAGG 1 cut(s) 262
XspI CTAG 4 cut(s) 263, 591, 996, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.