Rmu_sc0003298.1_g000004

Alpha/beta hydrolase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003298.1
Physical Location & Seq
Reverse (-)
12713 .. 16070
3358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003298.1_g000004.1.cds

Sequence Viewer

Length: 1318 bp
ctttttgactgaggactcgtacattgtgaggaagcttgagacgccctgcgccaaagcgtcggcgaagttgaggtacttgaatgagttcttgccggaggatcgcgatccggcttacgcttggctggtgattctctttgttttcattcttgcacttacagctataagtataaataccgaacatgacagcttggttcgacaagtgaagagagtgcagatgcatcctcccagtgctactcatgtactacttccagatggaaggcgattggcttatcacgagcaaggtgtcccagctaaaacatctcggatttcactgattgctcctcattcttttctttcatcacgacttgcaggtatgccgggaattaaaatatcattgcttgaagagtttggtatccgtttgatcacatatgatcttcctggctttggggagagtgatcctcatcccagcaggaatcttaactcatctgcgatggatatcctgtgtttagccaatgccattggtattgaagacaagttctgggtgctgggccactcaagtggagccatgcatgcttgggctgctcttagatacattcctgacaaagttgcaggtgcagctatggtggccccaataattaatccctatgaacctggcatgactaaggaagagatgaaaagaacttgggaaccatgggtttttagaaggaaaacaatgtacttcttagctcgtaggtttccaaagtttctaaactcttattatcgccgaagcttcctatcaggaaagcatgacagaattgacaagtggttatctctctcactgggcaagagggatgaaattctaatcgaagggccaaaaattgaagagcatttgcaaagggatgtggaggagtcaatccgccaggatagtactaaaccctttatagaggaagctgtgctacaagtatccaagtggggttttagcgtggcagatcttcaggtgcagaaaaagtgtcaacagggaggaattttaacttggctcaggtccttctacagtgaggcagaatgtgaactgactggatttctaggccagatacacatatggcaggggatggatgatcagataatcccaccatcagtaactgactatatttcgcgggttttacccggagcttatgtacataagctcccaaatgaaggccacttctcctacttgtatttctgtgatgaatgccatagacagatgtttactactcttttcggaagccctcaaggtccagttaaggaagatgctactccaactcaagtggaaggcaattctgaagagctatcatcatcaaatgctgattttcccacggagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

438

Amino Acids

49.8

Weight (kDa)

6.19

Isoelectric Point (pI)

60.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 579
Acc36I ACCTGC 2 cut(s) 339, 579
AccII CGCG 2 cut(s) 103, 1112
AciI CCGC 2 cut(s) 875, 1112
AclWI GGATC 3 cut(s) 99, 106, 429
AcsI RAATTY 2 cut(s) 814, 982
AcuI CTGAAG 2 cut(s) 936, 1297
AcyI GRCGYC 1 cut(s) 42
AdeI CACNNNGTG 1 cut(s) 1315
AfaI GTAC 6 cut(s) 21, 75, 241, 696, 887, 1135
AfiI CCNNNNNNNGG 2 cut(s) 423, 1152
AgsI TTSAA 4 cut(s) 80, 381, 507, 840
AjnI CCWGG 3 cut(s) 416, 629, 877
AjuI GAANNNNNNNTTGG 2 cut(s) 974, 1006
AleI CACNNNNGTG 1 cut(s) 535
Alw26I GTCTC 1 cut(s) 33
AlwI GGATC 3 cut(s) 99, 106, 429
AlwNI CAGNNNCTG 1 cut(s) 1098
AoxI GGCC 5 cut(s) 527, 604, 828, 1043, 1154
ApeKI GCWGC 2 cut(s) 558, 594
ApoI RAATTY 2 cut(s) 814, 982
AseI ATTAAT 1 cut(s) 616
Asp700I GAANNNNTTC 1 cut(s) 84
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 5 cut(s) 527, 605, 828, 1000, 1230
AsuC2I CCSGG 2 cut(s) 358, 1123
AsuHPI GGTGA 1 cut(s) 137
AvaII GGWCC 2 cut(s) 1000, 1230
BarI GAAGNNNNNNTAC 4 cut(s) 57, 89, 898, 930
BauI CACGAG 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 514
BbvI GCAGC 2 cut(s) 545, 606
BccI CCATC 4 cut(s) 246, 464, 1061, 1097
BciT130I CCWGG 3 cut(s) 418, 631, 879
BciVI GTATCC 2 cut(s) 402, 932
BclI TGATCA 2 cut(s) 400, 1073
BcnI CCSGG 2 cut(s) 358, 1123
BcoDI GTCTC 1 cut(s) 33
BfaI CTAG 1 cut(s) 1041
BfmI CTRYAG 1 cut(s) 1007
BfuAI ACCTGC 2 cut(s) 339, 579
BfuI GTATCC 2 cut(s) 402, 932
BglII AGATCT 1 cut(s) 947
BisI GCNGC 2 cut(s) 559, 595
BlsI GCNGC 2 cut(s) 560, 596
BmcAI AGTACT 1 cut(s) 887
Bme1390I CCNGG 5 cut(s) 358, 418, 631, 879, 1123
Bme18I GGWCC 2 cut(s) 1000, 1230
BmgT120I GGNCC 5 cut(s) 527, 605, 828, 1000, 1230
BmiI GGNNCC 3 cut(s) 542, 607, 667
BmrFI CCNGG 5 cut(s) 358, 418, 631, 879, 1123
BmrI ACTGGG 2 cut(s) 220, 807
BmsI GCATC 3 cut(s) 205, 227, 1235
BmuI ACTGGG 2 cut(s) 220, 807
BpiI GAAGAC 1 cut(s) 514
BplI GAGNNNNNCTC 2 cut(s) 422, 454
Bpu10I CCTNAGC 1 cut(s) 996
BpuEI CTTGAG 4 cut(s) 57, 518, 1210, 1243
BpuMI CCSGG 2 cut(s) 358, 1123
BsaBI GATNNNNATC 3 cut(s) 103, 439, 474
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 669, 1309
BsaXI ACNNNNNCTCC 4 cut(s) 1117, 1126, 1147, 1156
Bsc4I CCNNNNNNNGG 2 cut(s) 423, 1152
Bse1I ACTGG 4 cut(s) 226, 802, 1037, 1233
Bse3DI GCAATG 1 cut(s) 372
Bse8I GATNNNNATC 3 cut(s) 103, 439, 474
BseBI CCWGG 3 cut(s) 418, 631, 879
BseDI CCNNGG 2 cut(s) 669, 1309
BseGI GGATG 6 cut(s) 218, 440, 815, 863, 1072, 1076
BseJI GATNNNNATC 3 cut(s) 103, 439, 474
BseLI CCNNNNNNNGG 2 cut(s) 423, 1152
BseMI GCAATG 1 cut(s) 372
BseMII CTCAG 1 cut(s) 1010
BseNI ACTGG 4 cut(s) 226, 802, 1037, 1233
BseRI GAGGAG 2 cut(s) 310, 879
BseXI GCAGC 2 cut(s) 545, 606
BseYI CCCAGC 3 cut(s) 287, 444, 524
BsgI GTGCAG 3 cut(s) 231, 613, 978
Bsh1236I CGCG 2 cut(s) 103, 1112
BshFI GGCC 5 cut(s) 529, 606, 830, 1045, 1156
BsiSI CCGG 4 cut(s) 93, 108, 357, 1123
BslFI GGGAC 1 cut(s) 270
BslI CCNNNNNNNGG 2 cut(s) 423, 1152
BsmAI GTCTC 1 cut(s) 33
BsmBI CGTCTC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 270
BsmI GAATGC 1 cut(s) 1191
BsnI GGCC 5 cut(s) 529, 606, 830, 1045, 1156
Bsp1407I TGTACA 1 cut(s) 1133
Bsp143I GATC 7 cut(s) 98, 104, 400, 410, 434, 947, 1073
Bsp19I CCATGG 1 cut(s) 669
Bsp68I TCGCGA 1 cut(s) 103
BspACI CCGC 2 cut(s) 875, 1112
BspANI GGCC 5 cut(s) 529, 606, 830, 1045, 1156
BspCNI CTCAG 1 cut(s) 1009
BspFNI CGCG 2 cut(s) 103, 1112
BspLI GGNNCC 3 cut(s) 542, 607, 667
BspMI ACCTGC 2 cut(s) 339, 579
BspPI GGATC 3 cut(s) 99, 106, 429
BspQI GCTCTTC 2 cut(s) 835, 1273
BsrDI GCAATG 1 cut(s) 372
BsrGI TGTACA 1 cut(s) 1133
BsrI ACTGG 4 cut(s) 226, 802, 1037, 1233
BssECI CCNNGG 2 cut(s) 669, 1309
BssMI GATC 7 cut(s) 98, 104, 400, 410, 434, 947, 1073
BssNI GRCGYC 1 cut(s) 42
BssSI CACGAG 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 669
Bst2BI CACGAG 1 cut(s) 273
Bst2UI CCWGG 3 cut(s) 418, 631, 879
Bst4CI ACNGT 1 cut(s) 1011
Bst6I CTCTTC 5 cut(s) 198, 376, 640, 835, 1273
BstACI GRCGYC 1 cut(s) 42
BstAUI TGTACA 1 cut(s) 1133
BstC8I GCNNGC 1 cut(s) 550
BstDEI CTNAG 5 cut(s) 10, 564, 640, 701, 996
BstDSI CCRYGG 2 cut(s) 669, 1309
BstF5I GGATG 6 cut(s) 218, 440, 815, 863, 1072, 1076
BstFNI CGCG 2 cut(s) 103, 1112
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 7 cut(s) 101, 107, 403, 413, 437, 950, 1076
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 7 cut(s) 98, 104, 400, 410, 434, 947, 1073
BstMWI GCNNNNNNNGC 6 cut(s) 41, 156, 549, 558, 594, 603
BstNI CCWGG 3 cut(s) 418, 631, 879
BstNSI RCATGY 1 cut(s) 552
BstSCI CCNGG 5 cut(s) 356, 416, 629, 877, 1121
BstSFI CTRYAG 1 cut(s) 1007
BstUI CGCG 2 cut(s) 103, 1112
BstV1I GCAGC 2 cut(s) 545, 606
BstV2I GAAGAC 1 cut(s) 514
BstX2I RGATCY 1 cut(s) 947
BstXI CCANNNNNNTGG 1 cut(s) 537
BstYI RGATCY 1 cut(s) 947
BsuI GTATCC 2 cut(s) 402, 932
BsuRI GGCC 5 cut(s) 529, 606, 830, 1045, 1156
BtgI CCRYGG 2 cut(s) 669, 1309
BtgZI GCGATG 1 cut(s) 483
BtsCI GGATG 6 cut(s) 218, 440, 815, 863, 1072, 1076
BtsIMutI CAGTG 4 cut(s) 233, 309, 795, 1016
BtuMI TCGCGA 1 cut(s) 103
BveI ACCTGC 2 cut(s) 339, 579
Cac8I GCNNGC 1 cut(s) 550
CaiI CAGNNNCTG 1 cut(s) 1098
CfoI GCGC 1 cut(s) 51
Cfr13I GGNCC 5 cut(s) 527, 605, 828, 1000, 1230
CseI GACGC 2 cut(s) 46, 50
Csp6I GTAC 6 cut(s) 20, 74, 240, 695, 886, 1134
CspCI CAANNNNNGTGG 2 cut(s) 1243, 1278
CviAII CATG 7 cut(s) 180, 237, 545, 549, 635, 670, 765
CviQI GTAC 6 cut(s) 20, 74, 240, 695, 886, 1134
DdeI CTNAG 5 cut(s) 10, 564, 640, 701, 996
DpnI GATC 7 cut(s) 100, 106, 402, 412, 436, 949, 1075
DpnII GATC 7 cut(s) 98, 104, 400, 410, 434, 947, 1073
DraIII CACNNNGTG 1 cut(s) 1315
Eam1104I CTCTTC 5 cut(s) 198, 376, 640, 835, 1273
EarI CTCTTC 5 cut(s) 198, 376, 640, 835, 1273
EciI GGCGGA 1 cut(s) 864
Eco130I CCWWGG 1 cut(s) 669
Eco32I GATATC 1 cut(s) 476
Eco47I GGWCC 2 cut(s) 1000, 1230
Eco57I CTGAAG 2 cut(s) 936, 1297
EcoO109I RGGNCCY 1 cut(s) 1000
EcoRII CCWGG 3 cut(s) 416, 629, 877
EcoRV GATATC 1 cut(s) 476
EcoT14I CCWWGG 1 cut(s) 669
EcoT22I ATGCAT 2 cut(s) 220, 550
ErhI CCWWGG 1 cut(s) 669
Esp3I CGTCTC 1 cut(s) 33
FaeI CATG 7 cut(s) 183, 240, 548, 552, 638, 673, 768
FaqI GGGAC 1 cut(s) 270
FatI CATG 7 cut(s) 179, 236, 544, 548, 634, 669, 764
FauI CCCGC 1 cut(s) 1105
FauNDI CATATG 2 cut(s) 407, 1056
FbaI TGATCA 2 cut(s) 400, 1073
Fnu4HI GCNGC 2 cut(s) 559, 595
FokI GGATG 6 cut(s) 205, 427, 822, 870, 1079, 1083
Fsp4HI GCNGC 2 cut(s) 559, 595
FspBI CTAG 1 cut(s) 1041
GlaI GCGC 1 cut(s) 50
GluI GCNGC 2 cut(s) 559, 595
GsaI CCCAGC 3 cut(s) 291, 448, 528
HaeIII GGCC 5 cut(s) 529, 606, 830, 1045, 1156
HapII CCGG 4 cut(s) 93, 108, 357, 1123
HgaI GACGC 2 cut(s) 46, 50
HhaI GCGC 1 cut(s) 51
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 7 cut(s) 183, 240, 548, 552, 638, 673, 768
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HincII GTYRAC 1 cut(s) 972
HindII GTYRAC 1 cut(s) 972
HindIII AAGCTT 2 cut(s) 33, 746
HinfI GANTC 4 cut(s) 15, 128, 452, 867
HpaII CCGG 4 cut(s) 93, 108, 357, 1123
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 3 cut(s) 972, 1026, 1204
Hpy188I TCNGA 4 cut(s) 304, 1078, 1218, 1277
Hpy188III TCNNGA 6 cut(s) 102, 249, 273, 340, 576, 757
Hpy8I GTNNAC 3 cut(s) 972, 1026, 1204
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 6 cut(s) 250, 676, 819, 1013, 1146, 1260
HpyCH4III ACNGT 1 cut(s) 1011
HpyCH4V TGCA 9 cut(s) 150, 212, 218, 348, 548, 588, 594, 851, 959
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 156, 549, 558, 594, 603
HpyF3I CTNAG 5 cut(s) 10, 564, 640, 701, 996
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 7 cut(s) 183, 240, 548, 552, 638, 673, 768
HspAI GCGC 1 cut(s) 49
Ksp22I TGATCA 2 cut(s) 400, 1073
Kzo9I GATC 7 cut(s) 98, 104, 400, 410, 434, 947, 1073
LguI GCTCTTC 2 cut(s) 835, 1273
LmnI GCTCC 4 cut(s) 323, 540, 1125, 1147
Lsp1109I GCAGC 2 cut(s) 545, 606
LweI GCATC 3 cut(s) 205, 227, 1235
MaeI CTAG 1 cut(s) 1041
MaeIII GTNAC 1 cut(s) 1094
MalI GATC 7 cut(s) 100, 106, 402, 412, 436, 949, 1075
MboI GATC 7 cut(s) 98, 104, 400, 410, 434, 947, 1073
MboII GAAGA 9 cut(s) 215, 393, 405, 519, 657, 852, 942, 1254, 1290
MflI RGATCY 1 cut(s) 947
MluCI AATT 7 cut(s) 361, 613, 772, 814, 835, 982, 1271
MlyI GAGTC 2 cut(s) 9, 876
MmeI TCCRAC 1 cut(s) 1278
Mph1103I ATGCAT 2 cut(s) 220, 550
MroXI GAANNNNTTC 1 cut(s) 84
MseI TTAA 5 cut(s) 364, 457, 616, 987, 1237
MslI CAYNNNNRTG 1 cut(s) 535
MspI CCGG 4 cut(s) 93, 108, 357, 1123
MspR9I CCNGG 5 cut(s) 358, 418, 631, 879, 1123
Mva1269I GAATGC 1 cut(s) 1191
MvaI CCWGG 3 cut(s) 418, 631, 879
MvnI CGCG 2 cut(s) 103, 1112
MwoI GCNNNNNNNGC 6 cut(s) 41, 156, 549, 558, 594, 603
NciI CCSGG 2 cut(s) 358, 1123
NcoI CCATGG 1 cut(s) 669
NdeI CATATG 2 cut(s) 407, 1056
NdeII GATC 7 cut(s) 98, 104, 400, 410, 434, 947, 1073
NlaIII CATG 7 cut(s) 183, 240, 548, 552, 638, 673, 768
NlaIV GGNNCC 3 cut(s) 542, 607, 667
NruI TCGCGA 1 cut(s) 103
NsiI ATGCAT 2 cut(s) 220, 550
NspI RCATGY 1 cut(s) 552
OliI CACNNNNGTG 1 cut(s) 535
PaeI GCATGC 1 cut(s) 552
PaqCI CACCTGC 1 cut(s) 579
PciSI GCTCTTC 2 cut(s) 835, 1273
PctI GAATGC 1 cut(s) 1191
PdmI GAANNNNTTC 1 cut(s) 84
PfeI GAWTC 2 cut(s) 128, 452
PkrI GCNGC 2 cut(s) 560, 596
PleI GAGTC 2 cut(s) 9, 875
PpsI GAGTC 2 cut(s) 9, 875
PpuMI RGGWCCY 1 cut(s) 1000
PshBI ATTAAT 1 cut(s) 616
Psp5II RGGWCCY 1 cut(s) 1000
Psp6I CCWGG 3 cut(s) 416, 629, 877
PspFI CCCAGC 3 cut(s) 287, 444, 524
PspGI CCWGG 3 cut(s) 416, 629, 877
PspN4I GGNNCC 3 cut(s) 542, 607, 667
PspPI GGNCC 5 cut(s) 527, 605, 828, 1000, 1230
PspPPI RGGWCCY 1 cut(s) 1000
PstNI CAGNNNCTG 1 cut(s) 1098
PsuI RGATCY 1 cut(s) 947
RruI TCGCGA 1 cut(s) 103
RsaI GTAC 6 cut(s) 21, 75, 241, 696, 887, 1135
RsaNI GTAC 6 cut(s) 20, 74, 240, 695, 886, 1134
RseI CAYNNNNRTG 1 cut(s) 535
SapI GCTCTTC 2 cut(s) 835, 1273
SaqAI TTAA 5 cut(s) 364, 457, 616, 987, 1237
SatI GCNGC 2 cut(s) 559, 595
Sau3AI GATC 7 cut(s) 98, 104, 400, 410, 434, 947, 1073
Sau96I GGNCC 5 cut(s) 527, 605, 828, 1000, 1230
ScaI AGTACT 1 cut(s) 887
SchI GAGTC 2 cut(s) 9, 876
ScrFI CCNGG 5 cut(s) 358, 418, 631, 879, 1123
SfaNI GCATC 3 cut(s) 205, 227, 1235
SfcI CTRYAG 1 cut(s) 1007
SinI GGWCC 2 cut(s) 1000, 1230
SmiMI CAYNNNNRTG 1 cut(s) 535
SmlI CTYRAG 4 cut(s) 36, 533, 1225, 1258
SmoI CTYRAG 4 cut(s) 36, 533, 1225, 1258
SphI GCATGC 1 cut(s) 552
Sse9I AATT 7 cut(s) 361, 613, 772, 814, 835, 982, 1271
SsiI CCGC 2 cut(s) 875, 1112
SspMI CTAG 1 cut(s) 1041
StyD4I CCNGG 5 cut(s) 356, 416, 629, 877, 1121
StyI CCWWGG 1 cut(s) 669
TaaI ACNGT 1 cut(s) 1011
TaqI TCGA 2 cut(s) 194, 823
TasI AATT 7 cut(s) 361, 613, 772, 814, 835, 982, 1271
TatI WGTACW 4 cut(s) 239, 694, 885, 1133
TfiI GAWTC 2 cut(s) 128, 452
Tru1I TTAA 5 cut(s) 364, 457, 616, 987, 1237
Tru9I TTAA 5 cut(s) 364, 457, 616, 987, 1237
TscAI CASTG 4 cut(s) 233, 316, 802, 1016
TseI GCWGC 2 cut(s) 558, 594
TspDTI ATGAA 7 cut(s) 131, 325, 640, 666, 826, 1165, 1198
TspGWI ACGGA 1 cut(s) 384
TspRI CASTG 4 cut(s) 233, 316, 802, 1016
VpaK11BI GGWCC 2 cut(s) 1000, 1230
VspI ATTAAT 1 cut(s) 616
XapI RAATTY 2 cut(s) 814, 982
XceI RCATGY 1 cut(s) 552
XmnI GAANNNNTTC 1 cut(s) 84
XspI CTAG 1 cut(s) 1041
ZrmI AGTACT 1 cut(s) 887
Zsp2I ATGCAT 2 cut(s) 220, 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.