Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001825

Physical Location & Seq

Genomic Coordinates Forward (+)

12975605 .. 12980401

Gene Structure 4797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG147000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGTGTGCAGCTATAAGTATAAATACCGAACATGACAGCTTGGTTCGACAAGTGAAGAGAGTGCAGATGCATCCTCCCAGTGCTACTCATGTACTACTTCCAGATGGAAGGCGATTGGCTTATCACGAGCAAGGTGTCCCAGCTAAAACAACTCGGATTTCACTGATTGCTCCTCATTCTTTTCTTTCATCACGACTTGCAGGTATACCGGGAATTAAAATATCATTGCTTGAAGAGTTTGGTATCCGCTTGATCACATATGATCTTCCTGGCTTTGGGGAGAGTGATCCTCATCCCAGCAGGAATCTTAACTCATCTGCAATGGATATCCTGTGTTTAGCCAATGCCATTGGTATTGAAGACAAGTTCTGGGTGCTGGGCCACTCAAGTGGAGCCATGCATGCTTGGGCTGCTCTTAGATACATTCCTGACAAAGTTGCAGGTGCAGCTATGGTGGCCCCAATAATTAATCCCTATGAACCTGGCATGACTAAGGAAGAGATGAAAAGAACTTGGGAACCATGGGTTTTTAGAAGGAAAACAATGTACTTCTTAGCTCGTAGGTTTCCAAAGTTTCTAAACTCTTATTATCGCCGAAGCTTCCTATCAGGAAAGCATGACAGAATTGACAAGTGGTTATCTCTCTCACTGGGCAAGAGGGATGAAATTCTAATCGAAGGGCCAAAAATTGAAGAGCATTTGCAAAGGGATGTGGAGGAGTCGATCCGCCAGGATAGTACTAAACCCTTTATAGAGGAAGCTGTGCTACAAGTATCCAAGTGGGGTTTTAGTGTGGCAGATCTTCAGGTGCAGAAAAAGTGTCAACAGGGAGGAATTTTAACTTGGCTCAGGTCCTTCTACAGTGAGGCAGAATGTGAACTGACTGGATTTCTAGGCCAGATACACATATGGCAGGGGATGGATGATCAGATAATCCCACCATCAGTAACTGACTATATTTCGCGGGTTTTACCCGGAGCTTATGTGCATAAGCTCCCAAATGAAGGCCACTTCTCCTACTTGTATTTCTGTGATGAATGCCATAGACAGATGTTTACTACTCTTTTCGGAAGCCCTCAAGGTCCAGTTAAGGAAGATGCTACTCCAACTCAAGTGGAAGGCAATTCTGAAGAGCTATCATCATCAAATGCTGATTTTCCCACGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

389

Amino Acids

44.05

Weight (kDa)

6.29

Isoelectric Point (pI)

59.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	74 - 341	9.1e-22	alpha/beta hydrolase fold
Hydrolase_4	PF12146	77 - 169	1.5e-08	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	80 - 341	8.5e-12	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09690 AT3G09690 AT5G02970
fragaria_vesca	FvH4_3g33440 FvH4_3g33440 FvH4_3g33440 FvH4_3g33440 FvH4_6g15410 FvH4_6g15410 FvH4_6g15410 FvH4_6g15410 FvH4_6g15410
malus_domestica	MD03G1111700.v1.1 MD04G1103800.v1.1 MD11G1126200.v1.1
prunus_persica	Prupe.6G094600_v2.0.a1 Prupe.6G240800_v2.0.a1 Prupe.6G240800_v2.0.a1 Prupe.6G240800_v2.0.a1 Prupe.6G240800_v2.0.a1
pyrus_communis	pycom04g09900 pycom11g10650 pycom12g12240
rosa_chinensis	RchiOBHm_Chr3g0468891 RchiOBHm_Chr5g0060781
rosa_laevigata	RLG00000024403 RLG00000035400
rosa_multiflora	Rmu_co8389401.1_g000001 Rmu_sc0000727.1_g000032 Rmu_sc0001639.1_g000013 Rmu_sc0003298.1_g000004 Rmu_sc0007143.1_g000009
rosa_roxburghii	Rroxscaffold_1G00019940 Rroxscaffold_6G00412480
rosa_rugosa	Rorug03G0097200 Rorug03G0097300 Rorug03G0097400 Rorug05G0334000
rosa_samantha	Rh3AG147000 Rh3BG169500 Rh3DG205600 Rh5AG396700 Rh5BG408700 Rh5CG433400 Rh5DG424000
rosa_wichuraiana	Rw3G013830 Rw5G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	431
Acc36I	ACCTGC	2 cut(s)	191, 431
AccI	GTMKAC	1 cut(s)	205
AccII	CGCG	1 cut(s)	964
AciI	CCGC	3 cut(s)	247, 727, 964
AclWI	GGATC	2 cut(s)	281, 718
AcsI	RAATTY	2 cut(s)	666, 834
AcuI	CTGAAG	2 cut(s)	788, 1149
AfaI	GTAC	3 cut(s)	93, 548, 739
AfiI	CCNNNNNNNGG	2 cut(s)	275, 1004
AgsI	TTSAA	3 cut(s)	233, 359, 692
AjnI	CCWGG	3 cut(s)	268, 481, 729
AjuI	GAANNNNNNNTTGG	2 cut(s)	826, 858
AleI	CACNNNNGTG	1 cut(s)	387
AlwI	GGATC	2 cut(s)	281, 718
AlwNI	CAGNNNCTG	1 cut(s)	950
AoxI	GGCC	5 cut(s)	379, 456, 680, 895, 1006
ApeKI	GCWGC	3 cut(s)	8, 410, 446
ApoI	RAATTY	2 cut(s)	666, 834
AseI	ATTAAT	1 cut(s)	468
AspS9I	GGNCC	5 cut(s)	379, 457, 680, 852, 1082
AsuC2I	CCSGG	2 cut(s)	210, 975
AvaII	GGWCC	2 cut(s)	852, 1082
BarI	GAAGNNNNNNTAC	2 cut(s)	750, 782
BauI	CACGAG	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	366
BbvI	GCAGC	3 cut(s)	20, 397, 458
BccI	CCATC	3 cut(s)	98, 913, 949
BciT130I	CCWGG	3 cut(s)	270, 483, 731
BciVI	GTATCC	2 cut(s)	254, 784
BclI	TGATCA	2 cut(s)	252, 925
BcnI	CCSGG	2 cut(s)	210, 975
BfaI	CTAG	1 cut(s)	893
BfmI	CTRYAG	1 cut(s)	859
BfuAI	ACCTGC	2 cut(s)	191, 431
BfuI	GTATCC	2 cut(s)	254, 784
BglII	AGATCT	1 cut(s)	799
BisI	GCNGC	3 cut(s)	9, 411, 447
BlsI	GCNGC	3 cut(s)	10, 412, 448
BmcAI	AGTACT	1 cut(s)	739
Bme1390I	CCNGG	5 cut(s)	210, 270, 483, 731, 975
Bme18I	GGWCC	2 cut(s)	852, 1082
BmgT120I	GGNCC	5 cut(s)	379, 457, 680, 852, 1082
BmiI	GGNNCC	3 cut(s)	394, 459, 519
BmrFI	CCNGG	5 cut(s)	210, 270, 483, 731, 975
BmrI	ACTGGG	2 cut(s)	72, 659
BmsI	GCATC	3 cut(s)	57, 79, 1087
BmuI	ACTGGG	2 cut(s)	72, 659
BpiI	GAAGAC	1 cut(s)	366
BplI	GAGNNNNNCTC	2 cut(s)	274, 306
Bpu10I	CCTNAGC	1 cut(s)	848
BpuEI	CTTGAG	3 cut(s)	370, 1062, 1095
BpuMI	CCSGG	2 cut(s)	210, 975
BsaBI	GATNNNNATC	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	521, 1161
BsaXI	ACNNNNNCTCC	2 cut(s)	969, 999
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 1004
Bse1I	ACTGG	4 cut(s)	78, 654, 889, 1085
Bse3DI	GCAATG	2 cut(s)	224, 327
Bse8I	GATNNNNATC	1 cut(s)	291
BseBI	CCWGG	3 cut(s)	270, 483, 731
BseDI	CCNNGG	2 cut(s)	521, 1161
BseGI	GGATG	6 cut(s)	70, 292, 667, 715, 924, 928
BseJI	GATNNNNATC	1 cut(s)	291
BseLI	CCNNNNNNNGG	2 cut(s)	275, 1004
BseMI	GCAATG	2 cut(s)	224, 327
BseMII	CTCAG	1 cut(s)	862
BseNI	ACTGG	4 cut(s)	78, 654, 889, 1085
BseRI	GAGGAG	2 cut(s)	162, 731
BseXI	GCAGC	3 cut(s)	20, 397, 458
BseYI	CCCAGC	3 cut(s)	139, 296, 376
BsgI	GTGCAG	4 cut(s)	27, 83, 465, 830
Bsh1236I	CGCG	1 cut(s)	964
BshFI	GGCC	5 cut(s)	381, 458, 682, 897, 1008
BsiSI	CCGG	2 cut(s)	209, 975
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	2 cut(s)	275, 1004
BsmFI	GGGAC	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	1043
BsnI	GGCC	5 cut(s)	381, 458, 682, 897, 1008
Bsp143I	GATC	6 cut(s)	252, 262, 286, 723, 799, 925
Bsp19I	CCATGG	1 cut(s)	521
BspACI	CCGC	3 cut(s)	247, 727, 964
BspANI	GGCC	5 cut(s)	381, 458, 682, 897, 1008
BspCNI	CTCAG	1 cut(s)	861
BspFNI	CGCG	1 cut(s)	964
BspLI	GGNNCC	3 cut(s)	394, 459, 519
BspMI	ACCTGC	2 cut(s)	191, 431
BspPI	GGATC	2 cut(s)	281, 718
BspQI	GCTCTTC	2 cut(s)	687, 1125
BsrDI	GCAATG	2 cut(s)	224, 327
BsrI	ACTGG	4 cut(s)	78, 654, 889, 1085
BssECI	CCNNGG	2 cut(s)	521, 1161
BssMI	GATC	6 cut(s)	252, 262, 286, 723, 799, 925
BssNAI	GTATAC	1 cut(s)	206
BssSI	CACGAG	1 cut(s)	125
BssT1I	CCWWGG	1 cut(s)	521
Bst1107I	GTATAC	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	125
Bst2UI	CCWGG	3 cut(s)	270, 483, 731
Bst4CI	ACNGT	1 cut(s)	863
Bst6I	CTCTTC	5 cut(s)	50, 228, 492, 687, 1125
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	4 cut(s)	416, 492, 553, 848
BstDSI	CCRYGG	2 cut(s)	521, 1161
BstF5I	GGATG	6 cut(s)	70, 292, 667, 715, 924, 928
BstFNI	CGCG	1 cut(s)	964
BstKTI	GATC	6 cut(s)	255, 265, 289, 726, 802, 928
BstMBI	GATC	6 cut(s)	252, 262, 286, 723, 799, 925
BstMWI	GCNNNNNNNGC	4 cut(s)	401, 410, 446, 455
BstNI	CCWGG	3 cut(s)	270, 483, 731
BstNSI	RCATGY	1 cut(s)	404
BstSCI	CCNGG	5 cut(s)	208, 268, 481, 729, 973
BstSFI	CTRYAG	1 cut(s)	859
BstUI	CGCG	1 cut(s)	964
BstV1I	GCAGC	3 cut(s)	20, 397, 458
BstV2I	GAAGAC	1 cut(s)	366
BstX2I	RGATCY	1 cut(s)	799
BstXI	CCANNNNNNTGG	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	799
BstZ17I	GTATAC	1 cut(s)	206
BsuI	GTATCC	2 cut(s)	254, 784
BsuRI	GGCC	5 cut(s)	381, 458, 682, 897, 1008
BtgI	CCRYGG	2 cut(s)	521, 1161
BtsCI	GGATG	6 cut(s)	70, 292, 667, 715, 924, 928
BtsIMutI	CAGTG	4 cut(s)	85, 161, 647, 868
BveI	ACCTGC	2 cut(s)	191, 431
Cac8I	GCNNGC	1 cut(s)	402
CaiI	CAGNNNCTG	1 cut(s)	950
Cfr13I	GGNCC	5 cut(s)	379, 457, 680, 852, 1082
Csp6I	GTAC	3 cut(s)	92, 547, 738
CspCI	CAANNNNNGTGG	2 cut(s)	1095, 1130
CviAII	CATG	7 cut(s)	32, 89, 397, 401, 487, 522, 617
CviQI	GTAC	3 cut(s)	92, 547, 738
DdeI	CTNAG	4 cut(s)	416, 492, 553, 848
DpnI	GATC	6 cut(s)	254, 264, 288, 725, 801, 927
DpnII	GATC	6 cut(s)	252, 262, 286, 723, 799, 925
Eam1104I	CTCTTC	5 cut(s)	50, 228, 492, 687, 1125
EarI	CTCTTC	5 cut(s)	50, 228, 492, 687, 1125
EciI	GGCGGA	1 cut(s)	716
Eco130I	CCWWGG	1 cut(s)	521
Eco32I	GATATC	1 cut(s)	328
Eco47I	GGWCC	2 cut(s)	852, 1082
Eco57I	CTGAAG	2 cut(s)	788, 1149
EcoO109I	RGGNCCY	1 cut(s)	852
EcoRII	CCWGG	3 cut(s)	268, 481, 729
EcoRV	GATATC	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	521
EcoT22I	ATGCAT	2 cut(s)	72, 402
ErhI	CCWWGG	1 cut(s)	521
FaeI	CATG	7 cut(s)	35, 92, 400, 404, 490, 525, 620
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	7 cut(s)	31, 88, 396, 400, 486, 521, 616
FauI	CCCGC	1 cut(s)	957
FauNDI	CATATG	2 cut(s)	259, 908
FbaI	TGATCA	2 cut(s)	252, 925
FblI	GTMKAC	1 cut(s)	205
Fnu4HI	GCNGC	3 cut(s)	9, 411, 447
FokI	GGATG	6 cut(s)	57, 279, 674, 722, 931, 935
Fsp4HI	GCNGC	3 cut(s)	9, 411, 447
FspBI	CTAG	1 cut(s)	893
GluI	GCNGC	3 cut(s)	9, 411, 447
GsaI	CCCAGC	3 cut(s)	143, 300, 380
HaeIII	GGCC	5 cut(s)	381, 458, 682, 897, 1008
HapII	CCGG	2 cut(s)	209, 975
Hin1II	CATG	7 cut(s)	35, 92, 400, 404, 490, 525, 620
HincII	GTYRAC	1 cut(s)	824
HindII	GTYRAC	1 cut(s)	824
HindIII	AAGCTT	1 cut(s)	598
HinfI	GANTC	2 cut(s)	304, 719
HpaII	CCGG	2 cut(s)	209, 975
Hpy166II	GTNNAC	4 cut(s)	206, 824, 878, 1056
Hpy188I	TCNGA	4 cut(s)	156, 930, 1070, 1129
Hpy188III	TCNNGA	5 cut(s)	101, 125, 192, 428, 609
Hpy8I	GTNNAC	4 cut(s)	206, 824, 878, 1056
HpyAV	CCTTC	6 cut(s)	102, 528, 671, 865, 998, 1112
HpyCH4III	ACNGT	1 cut(s)	863
HpyF10VI	GCNNNNNNNGC	4 cut(s)	401, 410, 446, 455
HpyF3I	CTNAG	4 cut(s)	416, 492, 553, 848
Hsp92II	CATG	7 cut(s)	35, 92, 400, 404, 490, 525, 620
Ksp22I	TGATCA	2 cut(s)	252, 925
Kzo9I	GATC	6 cut(s)	252, 262, 286, 723, 799, 925
LguI	GCTCTTC	2 cut(s)	687, 1125
LmnI	GCTCC	4 cut(s)	175, 392, 977, 999
Lsp1109I	GCAGC	3 cut(s)	20, 397, 458
LweI	GCATC	3 cut(s)	57, 79, 1087
MaeI	CTAG	1 cut(s)	893
MaeIII	GTNAC	1 cut(s)	946
MalI	GATC	6 cut(s)	254, 264, 288, 725, 801, 927
MboI	GATC	6 cut(s)	252, 262, 286, 723, 799, 925
MboII	GAAGA	9 cut(s)	67, 245, 257, 371, 509, 704, 794, 1106, 1142
MflI	RGATCY	1 cut(s)	799
MluCI	AATT	7 cut(s)	213, 465, 624, 666, 687, 834, 1123
MlyI	GAGTC	1 cut(s)	728
MmeI	TCCRAC	1 cut(s)	1130
MnlI	CCTC	9 cut(s)	84, 183, 300, 651, 709, 748, 824, 859, 1086
Mph1103I	ATGCAT	2 cut(s)	72, 402
MseI	TTAA	5 cut(s)	216, 309, 468, 839, 1089
MslI	CAYNNNNRTG	1 cut(s)	387
MspI	CCGG	2 cut(s)	209, 975
MspR9I	CCNGG	5 cut(s)	210, 270, 483, 731, 975
Mva1269I	GAATGC	1 cut(s)	1043
MvaI	CCWGG	3 cut(s)	270, 483, 731
MvnI	CGCG	1 cut(s)	964
MwoI	GCNNNNNNNGC	4 cut(s)	401, 410, 446, 455
NciI	CCSGG	2 cut(s)	210, 975
NcoI	CCATGG	1 cut(s)	521
NdeI	CATATG	2 cut(s)	259, 908
NdeII	GATC	6 cut(s)	252, 262, 286, 723, 799, 925
NlaIII	CATG	7 cut(s)	35, 92, 400, 404, 490, 525, 620
NlaIV	GGNNCC	3 cut(s)	394, 459, 519
NsiI	ATGCAT	2 cut(s)	72, 402
NspI	RCATGY	1 cut(s)	404
OliI	CACNNNNGTG	1 cut(s)	387
PaeI	GCATGC	1 cut(s)	404
PaqCI	CACCTGC	1 cut(s)	431
PciSI	GCTCTTC	2 cut(s)	687, 1125
PctI	GAATGC	1 cut(s)	1043
PfeI	GAWTC	1 cut(s)	304
PkrI	GCNGC	3 cut(s)	10, 412, 448
PleI	GAGTC	1 cut(s)	727
PpsI	GAGTC	1 cut(s)	727
PpuMI	RGGWCCY	1 cut(s)	852
PshBI	ATTAAT	1 cut(s)	468
Psp5II	RGGWCCY	1 cut(s)	852
Psp6I	CCWGG	3 cut(s)	268, 481, 729
PspFI	CCCAGC	3 cut(s)	139, 296, 376
PspGI	CCWGG	3 cut(s)	268, 481, 729
PspN4I	GGNNCC	3 cut(s)	394, 459, 519
PspPI	GGNCC	5 cut(s)	379, 457, 680, 852, 1082
PspPPI	RGGWCCY	1 cut(s)	852
PstNI	CAGNNNCTG	1 cut(s)	950
PsuI	RGATCY	1 cut(s)	799
RsaI	GTAC	3 cut(s)	93, 548, 739
RsaNI	GTAC	3 cut(s)	92, 547, 738
RseI	CAYNNNNRTG	1 cut(s)	387
SapI	GCTCTTC	2 cut(s)	687, 1125
SaqAI	TTAA	5 cut(s)	216, 309, 468, 839, 1089
SatI	GCNGC	3 cut(s)	9, 411, 447
Sau3AI	GATC	6 cut(s)	252, 262, 286, 723, 799, 925
Sau96I	GGNCC	5 cut(s)	379, 457, 680, 852, 1082
ScaI	AGTACT	1 cut(s)	739
SchI	GAGTC	1 cut(s)	728
ScrFI	CCNGG	5 cut(s)	210, 270, 483, 731, 975
SfaNI	GCATC	3 cut(s)	57, 79, 1087
SfcI	CTRYAG	1 cut(s)	859
SinI	GGWCC	2 cut(s)	852, 1082
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	3 cut(s)	385, 1077, 1110
SmoI	CTYRAG	3 cut(s)	385, 1077, 1110
SphI	GCATGC	1 cut(s)	404
Sse9I	AATT	7 cut(s)	213, 465, 624, 666, 687, 834, 1123
SsiI	CCGC	3 cut(s)	247, 727, 964
SspMI	CTAG	1 cut(s)	893
StyD4I	CCNGG	5 cut(s)	208, 268, 481, 729, 973
StyI	CCWWGG	1 cut(s)	521
TaaI	ACNGT	1 cut(s)	863
TaqI	TCGA	3 cut(s)	46, 675, 722
TasI	AATT	7 cut(s)	213, 465, 624, 666, 687, 834, 1123
TatI	WGTACW	3 cut(s)	91, 546, 737
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	5 cut(s)	216, 309, 468, 839, 1089
Tru9I	TTAA	5 cut(s)	216, 309, 468, 839, 1089
TscAI	CASTG	4 cut(s)	85, 168, 654, 868
TseI	GCWGC	3 cut(s)	8, 410, 446
TspDTI	ATGAA	6 cut(s)	177, 492, 518, 678, 1017, 1050
TspRI	CASTG	4 cut(s)	85, 168, 654, 868
VpaK11BI	GGWCC	2 cut(s)	852, 1082
VspI	ATTAAT	1 cut(s)	468
XapI	RAATTY	2 cut(s)	666, 834
XceI	RCATGY	1 cut(s)	404
XmiI	GTMKAC	1 cut(s)	205
XspI	CTAG	1 cut(s)	893
ZrmI	AGTACT	1 cut(s)	739
Zsp2I	ATGCAT	2 cut(s)	72, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.