Alpha/beta hydrolase family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G09690 AT3G09690 AT5G02970 |
| fragaria_vesca | FvH4_3g33440 FvH4_3g33440 FvH4_3g33440 FvH4_3g33440 FvH4_6g15410 FvH4_6g15410 FvH4_6g15410 FvH4_6g15410 FvH4_6g15410 |
| malus_domestica | MD03G1111700.v1.1 MD04G1103800.v1.1 MD11G1126200.v1.1 |
| prunus_persica | Prupe.6G094600_v2.0.a1 Prupe.6G240800_v2.0.a1 Prupe.6G240800_v2.0.a1 Prupe.6G240800_v2.0.a1 Prupe.6G240800_v2.0.a1 |
| pyrus_communis | pycom04g09900 pycom11g10650 pycom12g12240 |
| rosa_chinensis | RchiOBHm_Chr3g0468891 RchiOBHm_Chr5g0060781 |
| rosa_laevigata | RLG00000024403 RLG00000035400 |
| rosa_multiflora | Rmu_co8389401.1_g000001 Rmu_sc0000727.1_g000032 Rmu_sc0001639.1_g000013 Rmu_sc0003298.1_g000004 Rmu_sc0007143.1_g000009 |
| rosa_roxburghii | Rroxscaffold_1G00019940 Rroxscaffold_6G00412480 |
| rosa_rugosa | Rorug03G0097200 Rorug03G0097300 Rorug03G0097400 Rorug05G0334000 |
| rosa_samantha | Rh3AG147000 Rh3BG169500 Rh3DG205600 Rh5AG396700 Rh5BG408700 Rh5CG433400 Rh5DG424000 |
| rosa_wichuraiana | Rw3G013830 Rw5G037400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 860 |
| Acc36I | ACCTGC | 1 cut(s) | 860 |
| AccB1I | GGYRCC | 2 cut(s) | 128, 148 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 51 |
| AccBSI | CCGCTC | 1 cut(s) | 819 |
| AccII | CGCG | 4 cut(s) | 264, 328, 336, 958 |
| AclWI | GGATC | 2 cut(s) | 710, 1545 |
| AcoI | YGGCCR | 2 cut(s) | 207, 1048 |
| AcsI | RAATTY | 1 cut(s) | 968 |
| AcuI | CTGAAG | 1 cut(s) | 1584 |
| AcyI | GRCGYC | 1 cut(s) | 129 |
| AdeI | CACNNNGTG | 1 cut(s) | 1589 |
| AfaI | GTAC | 7 cut(s) | 104, 308, 457, 977, 1013, 1416, 1546 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 17, 51, 704, 1432, 1433 |
| AflII | CTTAAG | 2 cut(s) | 644, 1277 |
| AgsI | TTSAA | 4 cut(s) | 189, 591, 912, 1553 |
| AjnI | CCWGG | 6 cut(s) | 44, 637, 697, 833, 941, 1402 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1569, 1601 |
| AluBI | AGCT | 9 cut(s) | 285, 581, 770, 986, 1029, 1097, 1190, 1298, 1423 |
| AluI | AGCT | 9 cut(s) | 285, 581, 770, 986, 1029, 1097, 1190, 1298, 1423 |
| Alw21I | GWGCWC | 3 cut(s) | 1269, 1290, 1392 |
| Alw26I | GTCTC | 4 cut(s) | 152, 418, 925, 1607 |
| Alw44I | GTGCAC | 1 cut(s) | 1388 |
| AlwI | GGATC | 2 cut(s) | 710, 1545 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 875 |
| Ama87I | CYCGRG | 2 cut(s) | 23, 814 |
| AoxI | GGCC | 8 cut(s) | 8, 41, 47, 207, 1048, 1324, 1435, 1608 |
| ApaLI | GTGCAC | 1 cut(s) | 1388 |
| ApeKI | GCWGC | 6 cut(s) | 98, 431, 512, 839, 875, 1295 |
| ApoI | RAATTY | 1 cut(s) | 968 |
| AseI | ATTAAT | 1 cut(s) | 786 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1175 |
| AspA2I | CCTAGG | 1 cut(s) | 253 |
| AspLEI | GCGC | 3 cut(s) | 131, 958, 1295 |
| AspS9I | GGNCC | 7 cut(s) | 8, 20, 42, 1108, 1325, 1363, 1435 |
| AsuC2I | CCSGG | 2 cut(s) | 117, 622 |
| AsuHPI | GGTGA | 2 cut(s) | 1435, 1601 |
| AvaI | CYCGRG | 2 cut(s) | 23, 814 |
| AvaII | GGWCC | 3 cut(s) | 20, 1108, 1363 |
| AvrII | CCTAGG | 1 cut(s) | 253 |
| AxyI | CCTNAGG | 1 cut(s) | 369 |
| BaeGI | GKGCMC | 2 cut(s) | 1392, 1516 |
| BalI | TGGCCA | 1 cut(s) | 1050 |
| BanI | GGYRCC | 2 cut(s) | 128, 148 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 315, 347 |
| Bbv12I | GWGCWC | 3 cut(s) | 1269, 1290, 1392 |
| BbvI | GCAGC | 6 cut(s) | 110, 443, 499, 851, 862, 1307 |
| BccI | CCATC | 4 cut(s) | 199, 527, 1342, 1479 |
| BceAI | ACGGC | 2 cut(s) | 121, 194 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 14, 48, 728, 762 |
| BciT130I | CCWGG | 6 cut(s) | 46, 639, 699, 835, 943, 1404 |
| BciVI | GTATCC | 1 cut(s) | 803 |
| BcnI | CCSGG | 2 cut(s) | 117, 622 |
| BcoDI | GTCTC | 4 cut(s) | 152, 418, 925, 1607 |
| BfaI | CTAG | 5 cut(s) | 254, 582, 921, 987, 999 |
| BfoI | RGCGCY | 1 cut(s) | 132 |
| BfrI | CTTAAG | 2 cut(s) | 644, 1277 |
| BfuAI | ACCTGC | 1 cut(s) | 860 |
| BfuI | GTATCC | 1 cut(s) | 803 |
| BlnI | CCTAGG | 1 cut(s) | 253 |
| BlpI | GCTNAGC | 1 cut(s) | 1289 |
| BmcAI | AGTACT | 2 cut(s) | 457, 1546 |
| Bme1390I | CCNGG | 8 cut(s) | 46, 117, 622, 639, 699, 835, 943, 1404 |
| Bme18I | GGWCC | 3 cut(s) | 20, 1108, 1363 |
| BmeT110I | CYCGRG | 2 cut(s) | 23, 814 |
| BmgT120I | GGNCC | 7 cut(s) | 8, 20, 42, 1108, 1325, 1363, 1435 |
| BmiI | GGNNCC | 7 cut(s) | 9, 22, 130, 150, 381, 1110, 1365 |
| BmrFI | CCNGG | 8 cut(s) | 46, 117, 622, 639, 699, 835, 943, 1404 |
| BmrI | ACTGGG | 3 cut(s) | 501, 1088, 1219 |
| BmsI | GCATC | 1 cut(s) | 763 |
| BmuI | ACTGGG | 3 cut(s) | 501, 1088, 1219 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1299 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1289 |
| BpuMI | CCSGG | 2 cut(s) | 117, 622 |
| BsaBI | GATNNNNATC | 1 cut(s) | 720 |
| BsaHI | GRCGYC | 1 cut(s) | 129 |
| BsaJI | CCNNGG | 9 cut(s) | 44, 50, 116, 210, 253, 834, 942, 1321, 1507 |
| BsaWI | WCCGGW | 1 cut(s) | 1392 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 159, 189, 1398, 1407, 1428, 1437 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 17, 51, 704, 1432, 1433 |
| Bse118I | RCCGGY | 1 cut(s) | 145 |
| Bse1I | ACTGG | 4 cut(s) | 507, 1083, 1214, 1521 |
| Bse21I | CCTNAGG | 1 cut(s) | 369 |
| Bse3DI | GCAATG | 2 cut(s) | 594, 756 |
| Bse8I | GATNNNNATC | 1 cut(s) | 720 |
| BseBI | CCWGG | 6 cut(s) | 46, 639, 699, 835, 943, 1404 |
| BseDI | CCNNGG | 9 cut(s) | 44, 50, 116, 210, 253, 834, 942, 1321, 1507 |
| BseGI | GGATG | 5 cut(s) | 499, 617, 721, 1353, 1357 |
| BseJI | GATNNNNATC | 1 cut(s) | 720 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 17, 51, 704, 1432, 1433 |
| BseMI | GCAATG | 2 cut(s) | 594, 756 |
| BseMII | CTCAG | 5 cut(s) | 360, 468, 859, 1303, 1313 |
| BseNI | ACTGG | 4 cut(s) | 507, 1083, 1214, 1521 |
| BseSI | GKGCMC | 2 cut(s) | 1392, 1516 |
| BseXI | GCAGC | 6 cut(s) | 110, 443, 499, 851, 862, 1307 |
| BsgI | GTGCAG | 1 cut(s) | 250 |
| Bsh1236I | CGCG | 4 cut(s) | 264, 328, 336, 958 |
| BshFI | GGCC | 8 cut(s) | 10, 43, 49, 209, 1050, 1326, 1437, 1610 |
| BshNI | GGYRCC | 2 cut(s) | 128, 148 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1269, 1290, 1392 |
| BsiHKCI | CYCGRG | 2 cut(s) | 23, 814 |
| BsiSI | CCGG | 7 cut(s) | 11, 116, 146, 155, 622, 1393, 1601 |
| BsiWI | CGTACG | 1 cut(s) | 102 |
| BslFI | GGGAC | 3 cut(s) | 314, 1103, 1349 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 17, 51, 704, 1432, 1433 |
| BsmAI | GTCTC | 4 cut(s) | 152, 418, 925, 1607 |
| BsmBI | CGTCTC | 3 cut(s) | 152, 418, 925 |
| BsmFI | GGGAC | 3 cut(s) | 314, 1103, 1349 |
| BsmI | GAATGC | 2 cut(s) | 672, 1472 |
| BsnI | GGCC | 8 cut(s) | 10, 43, 49, 209, 1050, 1326, 1437, 1610 |
| BsoBI | CYCGRG | 2 cut(s) | 23, 814 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1269, 1290, 1392, 1516 |
| Bsp143I | GATC | 4 cut(s) | 64, 691, 715, 1537 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1289 |
| Bsp19I | CCATGG | 1 cut(s) | 50 |
| Bsp68I | TCGCGA | 1 cut(s) | 264 |
| BspANI | GGCC | 8 cut(s) | 10, 43, 49, 209, 1050, 1326, 1437, 1610 |
| BspCNI | CTCAG | 5 cut(s) | 361, 469, 858, 1302, 1312 |
| BspFNI | CGCG | 4 cut(s) | 264, 328, 336, 958 |
| BspHI | TCATGA | 1 cut(s) | 915 |
| BspLI | GGNNCC | 7 cut(s) | 9, 22, 130, 150, 381, 1110, 1365 |
| BspMI | ACCTGC | 1 cut(s) | 860 |
| BspPI | GGATC | 2 cut(s) | 710, 1545 |
| BspT107I | GGYRCC | 2 cut(s) | 128, 148 |
| BspTI | CTTAAG | 2 cut(s) | 644, 1277 |
| BsrBI | CCGCTC | 1 cut(s) | 819 |
| BsrDI | GCAATG | 2 cut(s) | 594, 756 |
| BsrFI | RCCGGY | 1 cut(s) | 145 |
| BsrI | ACTGG | 4 cut(s) | 507, 1083, 1214, 1521 |
| BssAI | RCCGGY | 1 cut(s) | 145 |
| BssECI | CCNNGG | 9 cut(s) | 44, 50, 116, 210, 253, 834, 942, 1321, 1507 |
| BssMI | GATC | 4 cut(s) | 64, 691, 715, 1537 |
| BssNI | GRCGYC | 1 cut(s) | 129 |
| BssT1I | CCWWGG | 4 cut(s) | 50, 253, 1321, 1507 |
| Bst2UI | CCWGG | 6 cut(s) | 46, 639, 699, 835, 943, 1404 |
| Bst4CI | ACNGT | 4 cut(s) | 163, 460, 1176, 1371 |
| Bst6I | CTCTTC | 3 cut(s) | 657, 921, 1116 |
| BstACI | GRCGYC | 1 cut(s) | 129 |
| BstAFI | CTTAAG | 2 cut(s) | 644, 1277 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 875 |
| BstC8I | GCNNGC | 7 cut(s) | 139, 143, 517, 627, 827, 831, 1265 |
| BstDEI | CTNAG | 6 cut(s) | 369, 477, 766, 845, 1289, 1299 |
| BstDSI | CCRYGG | 2 cut(s) | 50, 210 |
| BstF5I | GGATG | 5 cut(s) | 499, 617, 721, 1353, 1357 |
| BstFNI | CGCG | 4 cut(s) | 264, 328, 336, 958 |
| BstH2I | RGCGCY | 1 cut(s) | 132 |
| BstHHI | GCGC | 3 cut(s) | 131, 958, 1295 |
| BstKTI | GATC | 4 cut(s) | 67, 694, 718, 1540 |
| BstMAI | GTCTC | 4 cut(s) | 152, 418, 925, 1607 |
| BstMBI | GATC | 4 cut(s) | 64, 691, 715, 1537 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 151, 206, 431, 578, 839, 875, 884, 1273, 1323 |
| BstNI | CCWGG | 6 cut(s) | 46, 639, 699, 835, 943, 1404 |
| BstNSI | RCATGY | 2 cut(s) | 829, 833 |
| BstSCI | CCNGG | 8 cut(s) | 44, 115, 620, 637, 697, 833, 941, 1402 |
| BstSLI | GKGCMC | 2 cut(s) | 1392, 1516 |
| BstUI | CGCG | 4 cut(s) | 264, 328, 336, 958 |
| BstV1I | GCAGC | 6 cut(s) | 110, 443, 499, 851, 862, 1307 |
| Bsu36I | CCTNAGG | 1 cut(s) | 369 |
| BsuI | GTATCC | 1 cut(s) | 803 |
| BsuRI | GGCC | 8 cut(s) | 10, 43, 49, 209, 1050, 1326, 1437, 1610 |
| BtgI | CCRYGG | 2 cut(s) | 50, 210 |
| BtsCI | GGATG | 5 cut(s) | 499, 617, 721, 1353, 1357 |
| BtsIMutI | CAGTG | 3 cut(s) | 514, 1076, 1514 |
| BtuMI | TCGCGA | 1 cut(s) | 264 |
| BveI | ACCTGC | 1 cut(s) | 860 |
| Cac8I | GCNNGC | 7 cut(s) | 139, 143, 517, 627, 827, 831, 1265 |
| CaiI | CAGNNNCTG | 1 cut(s) | 875 |
| CciI | TCATGA | 1 cut(s) | 915 |
| CfoI | GCGC | 3 cut(s) | 131, 958, 1295 |
| Cfr10I | RCCGGY | 1 cut(s) | 145 |
| Cfr13I | GGNCC | 7 cut(s) | 8, 20, 42, 1108, 1325, 1363, 1435 |
| Csp6I | GTAC | 7 cut(s) | 103, 307, 456, 976, 1012, 1415, 1545 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1515, 1550 |
| CviAII | CATG | 8 cut(s) | 51, 389, 826, 830, 880, 916, 1046, 1617 |
| CviQI | GTAC | 7 cut(s) | 103, 307, 456, 976, 1012, 1415, 1545 |
| DdeI | CTNAG | 6 cut(s) | 369, 477, 766, 845, 1289, 1299 |
| DinI | GGCGCC | 1 cut(s) | 130 |
| DpnI | GATC | 4 cut(s) | 66, 693, 717, 1539 |
| DpnII | GATC | 4 cut(s) | 64, 691, 715, 1537 |
| DraIII | CACNNNGTG | 1 cut(s) | 1589 |
| EaeI | YGGCCR | 2 cut(s) | 207, 1048 |
| Eam1104I | CTCTTC | 3 cut(s) | 657, 921, 1116 |
| EarI | CTCTTC | 3 cut(s) | 657, 921, 1116 |
| EciI | GGCGGA | 1 cut(s) | 215 |
| Eco130I | CCWWGG | 4 cut(s) | 50, 253, 1321, 1507 |
| Eco47I | GGWCC | 3 cut(s) | 20, 1108, 1363 |
| Eco57I | CTGAAG | 1 cut(s) | 1584 |
| Eco81I | CCTNAGG | 1 cut(s) | 369 |
| Eco88I | CYCGRG | 2 cut(s) | 23, 814 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1108 |
| EcoRII | CCWGG | 6 cut(s) | 44, 637, 697, 833, 941, 1402 |
| EcoT14I | CCWWGG | 4 cut(s) | 50, 253, 1321, 1507 |
| EcoT22I | ATGCAT | 1 cut(s) | 831 |
| EgeI | GGCGCC | 1 cut(s) | 130 |
| EheI | GGCGCC | 1 cut(s) | 130 |
| ErhI | CCWWGG | 4 cut(s) | 50, 253, 1321, 1507 |
| Esp3I | CGTCTC | 3 cut(s) | 152, 418, 925 |
| FaeI | CATG | 8 cut(s) | 54, 392, 829, 833, 883, 919, 1049, 1620 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1569, 1601 |
| FaqI | GGGAC | 3 cut(s) | 314, 1103, 1349 |
| FatI | CATG | 8 cut(s) | 50, 388, 825, 829, 879, 915, 1045, 1616 |
| FauI | CCCGC | 3 cut(s) | 28, 171, 329 |
| FauNDI | CATATG | 4 cut(s) | 688, 904, 1337, 1429 |
| FokI | GGATG | 5 cut(s) | 486, 604, 708, 1360, 1364 |
| FspBI | CTAG | 5 cut(s) | 254, 582, 921, 987, 999 |
| GlaI | GCGC | 3 cut(s) | 130, 957, 1294 |
| HaeII | RGCGCY | 1 cut(s) | 132 |
| HaeIII | GGCC | 8 cut(s) | 10, 43, 49, 209, 1050, 1326, 1437, 1610 |
| HapII | CCGG | 7 cut(s) | 11, 116, 146, 155, 622, 1393, 1601 |
| HhaI | GCGC | 3 cut(s) | 131, 958, 1295 |
| Hin1I | GRCGYC | 1 cut(s) | 129 |
| Hin1II | CATG | 8 cut(s) | 54, 392, 829, 833, 883, 919, 1049, 1620 |
| Hin6I | GCGC | 3 cut(s) | 129, 956, 1293 |
| HinP1I | GCGC | 3 cut(s) | 129, 956, 1293 |
| HindIII | AAGCTT | 3 cut(s) | 283, 1027, 1095 |
| HinfI | GANTC | 8 cut(s) | 14, 259, 266, 302, 740, 908, 1148, 1592 |
| HpaII | CCGG | 7 cut(s) | 11, 116, 146, 155, 622, 1393, 1601 |
| HphI | GGTGA | 2 cut(s) | 1435, 1601 |
| Hpy166II | GTNNAC | 1 cut(s) | 1390 |
| Hpy188I | TCNGA | 2 cut(s) | 281, 848 |
| Hpy8I | GTNNAC | 1 cut(s) | 1390 |
| Hpy99I | CGWCG | 1 cut(s) | 65 |
| HpyAV | CCTTC | 3 cut(s) | 286, 1077, 1547 |
| HpyCH4III | ACNGT | 4 cut(s) | 163, 460, 1176, 1371 |
| HpyCH4IV | ACGT | 1 cut(s) | 934 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 151, 206, 431, 578, 839, 875, 884, 1273, 1323 |
| HpyF3I | CTNAG | 6 cut(s) | 369, 477, 766, 845, 1289, 1299 |
| HpySE526I | ACGT | 1 cut(s) | 934 |
| Hsp92I | GRCGYC | 1 cut(s) | 129 |
| Hsp92II | CATG | 8 cut(s) | 54, 392, 829, 833, 883, 919, 1049, 1620 |
| HspAI | GCGC | 3 cut(s) | 129, 956, 1293 |
| KasI | GGCGCC | 1 cut(s) | 128 |
| Kzo9I | GATC | 4 cut(s) | 64, 691, 715, 1537 |
| LmnI | GCTCC | 5 cut(s) | 379, 556, 604, 892, 1428 |
| Lsp1109I | GCAGC | 6 cut(s) | 110, 443, 499, 851, 862, 1307 |
| LweI | GCATC | 1 cut(s) | 763 |
| MaeI | CTAG | 5 cut(s) | 254, 582, 921, 987, 999 |
| MaeII | ACGT | 1 cut(s) | 934 |
| MaeIII | GTNAC | 2 cut(s) | 322, 1074 |
| MalI | GATC | 4 cut(s) | 66, 693, 717, 1539 |
| MbiI | CCGCTC | 1 cut(s) | 819 |
| MboI | GATC | 4 cut(s) | 64, 691, 715, 1537 |
| MfeI | CAATTG | 1 cut(s) | 1270 |
| MhlI | GDGCHC | 4 cut(s) | 1269, 1290, 1392, 1516 |
| MlsI | TGGCCA | 1 cut(s) | 1050 |
| MluCI | AATT | 7 cut(s) | 341, 968, 1053, 1101, 1152, 1235, 1270 |
| MluNI | TGGCCA | 1 cut(s) | 1050 |
| Mly113I | GGCGCC | 1 cut(s) | 129 |
| MlyI | GAGTC | 2 cut(s) | 260, 296 |
| Mox20I | TGGCCA | 1 cut(s) | 1050 |
| Mph1103I | ATGCAT | 1 cut(s) | 831 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1175 |
| MscI | TGGCCA | 1 cut(s) | 1050 |
| MseI | TTAA | 5 cut(s) | 645, 786, 897, 1100, 1278 |
| Msp20I | TGGCCA | 1 cut(s) | 1050 |
| MspCI | CTTAAG | 2 cut(s) | 644, 1277 |
| MspI | CCGG | 7 cut(s) | 11, 116, 146, 155, 622, 1393, 1601 |
| MspR9I | CCNGG | 8 cut(s) | 46, 117, 622, 639, 699, 835, 943, 1404 |
| MunI | CAATTG | 1 cut(s) | 1270 |
| Mva1269I | GAATGC | 2 cut(s) | 672, 1472 |
| MvaI | CCWGG | 6 cut(s) | 46, 639, 699, 835, 943, 1404 |
| MvnI | CGCG | 4 cut(s) | 264, 328, 336, 958 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 151, 206, 431, 578, 839, 875, 884, 1273, 1323 |
| NarI | GGCGCC | 1 cut(s) | 129 |
| NciI | CCSGG | 2 cut(s) | 117, 622 |
| NcoI | CCATGG | 1 cut(s) | 50 |
| NdeI | CATATG | 4 cut(s) | 688, 904, 1337, 1429 |
| NdeII | GATC | 4 cut(s) | 64, 691, 715, 1537 |
| NlaIII | CATG | 8 cut(s) | 54, 392, 829, 833, 883, 919, 1049, 1620 |
| NlaIV | GGNNCC | 7 cut(s) | 9, 22, 130, 150, 381, 1110, 1365 |
| NmuCI | GTSAC | 1 cut(s) | 1074 |
| NruI | TCGCGA | 1 cut(s) | 264 |
| NsiI | ATGCAT | 1 cut(s) | 831 |
| NspI | RCATGY | 2 cut(s) | 829, 833 |
| PaeI | GCATGC | 2 cut(s) | 829, 833 |
| PaeR7I | CTCGAG | 1 cut(s) | 814 |
| PagI | TCATGA | 1 cut(s) | 915 |
| PaqCI | CACCTGC | 1 cut(s) | 860 |
| PctI | GAATGC | 2 cut(s) | 672, 1472 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1175 |
| PfeI | GAWTC | 6 cut(s) | 14, 259, 740, 908, 1148, 1592 |
| Pfl23II | CGTACG | 1 cut(s) | 102 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 51 |
| PleI | GAGTC | 2 cut(s) | 260, 296 |
| PluTI | GGCGCC | 1 cut(s) | 132 |
| PpsI | GAGTC | 2 cut(s) | 260, 296 |
| PpuMI | RGGWCCY | 1 cut(s) | 1108 |
| PshBI | ATTAAT | 1 cut(s) | 786 |
| Psp5II | RGGWCCY | 1 cut(s) | 1108 |
| Psp6I | CCWGG | 6 cut(s) | 44, 637, 697, 833, 941, 1402 |
| PspGI | CCWGG | 6 cut(s) | 44, 637, 697, 833, 941, 1402 |
| PspLI | CGTACG | 1 cut(s) | 102 |
| PspN4I | GGNNCC | 7 cut(s) | 9, 22, 130, 150, 381, 1110, 1365 |
| PspPI | GGNCC | 7 cut(s) | 8, 20, 42, 1108, 1325, 1363, 1435 |
| PspPPI | RGGWCCY | 1 cut(s) | 1108 |
| PspXI | VCTCGAGB | 1 cut(s) | 814 |
| PstNI | CAGNNNCTG | 1 cut(s) | 875 |
| RruI | TCGCGA | 1 cut(s) | 264 |
| RsaI | GTAC | 7 cut(s) | 104, 308, 457, 977, 1013, 1416, 1546 |
| RsaNI | GTAC | 7 cut(s) | 103, 307, 456, 976, 1012, 1415, 1545 |
| SaqAI | TTAA | 5 cut(s) | 645, 786, 897, 1100, 1278 |
| Sau3AI | GATC | 4 cut(s) | 64, 691, 715, 1537 |
| Sau96I | GGNCC | 7 cut(s) | 8, 20, 42, 1108, 1325, 1363, 1435 |
| ScaI | AGTACT | 2 cut(s) | 457, 1546 |
| SchI | GAGTC | 2 cut(s) | 260, 296 |
| ScrFI | CCNGG | 8 cut(s) | 46, 117, 622, 639, 699, 835, 943, 1404 |
| SduI | GDGCHC | 4 cut(s) | 1269, 1290, 1392, 1516 |
| SfaNI | GCATC | 1 cut(s) | 763 |
| SfoI | GGCGCC | 1 cut(s) | 130 |
| Sfr274I | CTCGAG | 1 cut(s) | 814 |
| SinI | GGWCC | 3 cut(s) | 20, 1108, 1363 |
| SlaI | CTCGAG | 1 cut(s) | 814 |
| SmlI | CTYRAG | 3 cut(s) | 644, 814, 1277 |
| SmoI | CTYRAG | 3 cut(s) | 644, 814, 1277 |
| SphI | GCATGC | 2 cut(s) | 829, 833 |
| Sse9I | AATT | 7 cut(s) | 341, 968, 1053, 1101, 1152, 1235, 1270 |
| SspDI | GGCGCC | 1 cut(s) | 128 |
| SspMI | CTAG | 5 cut(s) | 254, 582, 921, 987, 999 |
| StyD4I | CCNGG | 8 cut(s) | 44, 115, 620, 637, 697, 833, 941, 1402 |
| StyI | CCWWGG | 4 cut(s) | 50, 253, 1321, 1507 |
| TaaI | ACNGT | 4 cut(s) | 163, 460, 1176, 1371 |
| TaiI | ACGT | 1 cut(s) | 937 |
| TaqI | TCGA | 4 cut(s) | 738, 815, 1205, 1474 |
| TasI | AATT | 7 cut(s) | 341, 968, 1053, 1101, 1152, 1235, 1270 |
| TatI | WGTACW | 4 cut(s) | 455, 975, 1414, 1544 |
| TauI | GCSGC | 6 cut(s) | 154, 197, 200, 247, 331, 385 |
| TfiI | GAWTC | 6 cut(s) | 14, 259, 740, 908, 1148, 1592 |
| Tru1I | TTAA | 5 cut(s) | 645, 786, 897, 1100, 1278 |
| Tru9I | TTAA | 5 cut(s) | 645, 786, 897, 1100, 1278 |
| TscAI | CASTG | 3 cut(s) | 514, 1083, 1521 |
| TseFI | GTSAC | 1 cut(s) | 1074 |
| TseI | GCWGC | 6 cut(s) | 98, 431, 512, 839, 875, 1295 |
| Tsp45I | GTSAC | 1 cut(s) | 1074 |
| TspDTI | ATGAA | 5 cut(s) | 340, 377, 488, 1134, 1479 |
| TspGWI | ACGGA | 1 cut(s) | 104 |
| TspRI | CASTG | 3 cut(s) | 514, 1083, 1521 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 51 |
| Vha464I | CTTAAG | 2 cut(s) | 644, 1277 |
| VneI | GTGCAC | 1 cut(s) | 1388 |
| VpaK11BI | GGWCC | 3 cut(s) | 20, 1108, 1363 |
| VspI | ATTAAT | 1 cut(s) | 786 |
| XapI | RAATTY | 1 cut(s) | 968 |
| XceI | RCATGY | 2 cut(s) | 829, 833 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1335 |
| XhoI | CTCGAG | 1 cut(s) | 814 |
| XmaJI | CCTAGG | 1 cut(s) | 253 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1175 |
| XspI | CTAG | 5 cut(s) | 254, 582, 921, 987, 999 |
| ZrmI | AGTACT | 2 cut(s) | 457, 1546 |
| Zsp2I | ATGCAT | 1 cut(s) | 831 |