Alpha/beta hydrolase family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G09690 AT3G09690 AT5G02970 |
| fragaria_vesca | FvH4_3g33440 FvH4_3g33440 FvH4_3g33440 FvH4_3g33440 FvH4_6g15410 FvH4_6g15410 FvH4_6g15410 FvH4_6g15410 FvH4_6g15410 |
| malus_domestica | MD03G1111700.v1.1 MD04G1103800.v1.1 MD11G1126200.v1.1 |
| prunus_persica | Prupe.6G094600_v2.0.a1 Prupe.6G240800_v2.0.a1 Prupe.6G240800_v2.0.a1 Prupe.6G240800_v2.0.a1 Prupe.6G240800_v2.0.a1 |
| pyrus_communis | pycom04g09900 pycom11g10650 pycom12g12240 |
| rosa_chinensis | RchiOBHm_Chr3g0468891 RchiOBHm_Chr5g0060781 |
| rosa_laevigata | RLG00000024403 RLG00000035400 |
| rosa_multiflora | Rmu_co8389401.1_g000001 Rmu_sc0000727.1_g000032 Rmu_sc0001639.1_g000013 Rmu_sc0003298.1_g000004 Rmu_sc0007143.1_g000009 |
| rosa_roxburghii | Rroxscaffold_1G00019940 Rroxscaffold_6G00412480 |
| rosa_rugosa | Rorug03G0097200 Rorug03G0097300 Rorug03G0097400 Rorug05G0334000 |
| rosa_samantha | Rh3AG147000 Rh3BG169500 Rh3DG205600 Rh5AG396700 Rh5BG408700 Rh5CG433400 Rh5DG424000 |
| rosa_wichuraiana | Rw3G013830 Rw5G037400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 833 |
| Acc36I | ACCTGC | 2 cut(s) | 593, 833 |
| AccII | CGCG | 2 cut(s) | 191, 357 |
| AciI | CCGC | 4 cut(s) | 31, 80, 649, 1129 |
| AclWI | GGATC | 7 cut(s) | 25, 80, 180, 353, 360, 714, 1076 |
| AcoI | YGGCCR | 3 cut(s) | 81, 374, 741 |
| AcsI | RAATTY | 4 cut(s) | 418, 912, 974, 1068 |
| AcuI | CTGAAG | 1 cut(s) | 151 |
| AcyI | GRCGYC | 1 cut(s) | 107 |
| AfaI | GTAC | 4 cut(s) | 275, 427, 737, 1262 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 677, 698, 1406, 1526 |
| AgsI | TTSAA | 5 cut(s) | 334, 635, 1079, 1094, 1208 |
| AjnI | CCWGG | 4 cut(s) | 670, 697, 883, 1375 |
| AleI | CACNNNNGTG | 1 cut(s) | 789 |
| Alw21I | GWGCWC | 1 cut(s) | 1392 |
| Alw26I | GTCTC | 4 cut(s) | 505, 1047, 1180, 1441 |
| Alw44I | GTGCAC | 1 cut(s) | 1388 |
| AlwI | GGATC | 7 cut(s) | 25, 80, 180, 353, 360, 714, 1076 |
| Ama87I | CYCGRG | 1 cut(s) | 61 |
| AoxI | GGCC | 7 cut(s) | 81, 374, 741, 781, 858, 1297, 1408 |
| ApaLI | GTGCAC | 1 cut(s) | 1388 |
| ApeKI | GCWGC | 2 cut(s) | 77, 848 |
| ApoI | RAATTY | 4 cut(s) | 418, 912, 974, 1068 |
| AsiSI | GCGATCGC | 1 cut(s) | 195 |
| AspLEI | GCGC | 2 cut(s) | 305, 552 |
| AspS9I | GGNCC | 3 cut(s) | 781, 859, 1484 |
| AsuC2I | CCSGG | 1 cut(s) | 612 |
| AsuHPI | GGTGA | 3 cut(s) | 64, 215, 1337 |
| AsuNHI | GCTAGC | 1 cut(s) | 40 |
| AvaI | CYCGRG | 1 cut(s) | 61 |
| AvaII | GGWCC | 1 cut(s) | 1484 |
| BaeGI | GKGCMC | 1 cut(s) | 1392 |
| BalI | TGGCCA | 1 cut(s) | 743 |
| Bbv12I | GWGCWC | 1 cut(s) | 1392 |
| BbvI | GCAGC | 2 cut(s) | 64, 860 |
| BccI | CCATC | 2 cut(s) | 500, 1528 |
| BceAI | ACGGC | 1 cut(s) | 120 |
| BciT130I | CCWGG | 4 cut(s) | 672, 699, 885, 1377 |
| BciVI | GTATCC | 2 cut(s) | 60, 656 |
| BcnI | CCSGG | 1 cut(s) | 612 |
| BcoDI | GTCTC | 4 cut(s) | 505, 1047, 1180, 1441 |
| BfaI | CTAG | 4 cut(s) | 41, 480, 486, 1295 |
| BfmI | CTRYAG | 1 cut(s) | 1506 |
| BfuAI | ACCTGC | 2 cut(s) | 593, 833 |
| BfuI | GTATCC | 2 cut(s) | 60, 656 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 857 |
| BglII | AGATCT | 1 cut(s) | 1201 |
| BisI | GCNGC | 3 cut(s) | 78, 81, 849 |
| BlpI | GCTNAGC | 1 cut(s) | 546 |
| BlsI | GCNGC | 3 cut(s) | 79, 82, 850 |
| Bme1390I | CCNGG | 5 cut(s) | 612, 672, 699, 885, 1377 |
| Bme18I | GGWCC | 1 cut(s) | 1484 |
| BmeT110I | CYCGRG | 1 cut(s) | 61 |
| BmgT120I | GGNCC | 3 cut(s) | 781, 859, 1484 |
| BmiI | GGNNCC | 3 cut(s) | 139, 861, 921 |
| BmrFI | CCNGG | 5 cut(s) | 612, 672, 699, 885, 1377 |
| BmrI | ACTGGG | 1 cut(s) | 1061 |
| BmsI | GCATC | 1 cut(s) | 134 |
| BmtI | GCTAGC | 1 cut(s) | 44 |
| BmuI | ACTGGG | 1 cut(s) | 1061 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 676, 708 |
| BpmI | CTGGAG | 1 cut(s) | 1398 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 546 |
| BpuEI | CTTGAG | 2 cut(s) | 772, 1464 |
| BpuMI | CCSGG | 1 cut(s) | 612 |
| BsaBI | GATNNNNATC | 1 cut(s) | 357 |
| BsaHI | GRCGYC | 1 cut(s) | 107 |
| BsaJI | CCNNGG | 4 cut(s) | 312, 852, 923, 1132 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 217, 247, 1371, 1401 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 677, 698, 1406, 1526 |
| Bse118I | RCCGGY | 1 cut(s) | 376 |
| Bse1I | ACTGG | 3 cut(s) | 1056, 1291, 1487 |
| Bse3DI | GCAATG | 2 cut(s) | 626, 804 |
| Bse8I | GATNNNNATC | 1 cut(s) | 357 |
| BseBI | CCWGG | 4 cut(s) | 672, 699, 885, 1377 |
| BseDI | CCNNGG | 4 cut(s) | 312, 852, 923, 1132 |
| BseGI | GGATG | 6 cut(s) | 125, 472, 590, 694, 1069, 1117 |
| BseJI | GATNNNNATC | 1 cut(s) | 357 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 677, 698, 1406, 1526 |
| BseMI | GCAATG | 2 cut(s) | 626, 804 |
| BseMII | CTCAG | 4 cut(s) | 255, 537, 832, 1191 |
| BseNI | ACTGG | 3 cut(s) | 1056, 1291, 1487 |
| BseRI | GAGGAG | 2 cut(s) | 1133, 1172 |
| BseSI | GKGCMC | 1 cut(s) | 1392 |
| BseX3I | CGGCCG | 1 cut(s) | 81 |
| BseXI | GCAGC | 2 cut(s) | 64, 860 |
| BseYI | CCCAGC | 2 cut(s) | 541, 778 |
| BsgI | GTGCAG | 2 cut(s) | 867, 1232 |
| Bsh1236I | CGCG | 2 cut(s) | 191, 357 |
| Bsh1285I | CGRYCG | 2 cut(s) | 84, 195 |
| BshFI | GGCC | 7 cut(s) | 83, 376, 743, 783, 860, 1299, 1410 |
| BsiEI | CGRYCG | 2 cut(s) | 84, 195 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1392 |
| BsiHKCI | CYCGRG | 1 cut(s) | 61 |
| BsiSI | CCGG | 3 cut(s) | 141, 377, 611 |
| BslFI | GGGAC | 3 cut(s) | 47, 524, 1322 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 677, 698, 1406, 1526 |
| BsmAI | GTCTC | 4 cut(s) | 505, 1047, 1180, 1441 |
| BsmBI | CGTCTC | 1 cut(s) | 505 |
| BsmFI | GGGAC | 3 cut(s) | 47, 524, 1322 |
| BsmI | GAATGC | 2 cut(s) | 1280, 1445 |
| BsnI | GGCC | 7 cut(s) | 83, 376, 743, 783, 860, 1299, 1410 |
| BsoBI | CYCGRG | 1 cut(s) | 61 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1392 |
| Bsp1407I | TGTACA | 1 cut(s) | 1260 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 546 |
| Bsp19I | CCATGG | 2 cut(s) | 852, 923 |
| Bsp68I | TCGCGA | 2 cut(s) | 191, 357 |
| BspACI | CCGC | 4 cut(s) | 31, 80, 649, 1129 |
| BspANI | GGCC | 7 cut(s) | 83, 376, 743, 783, 860, 1299, 1410 |
| BspCNI | CTCAG | 4 cut(s) | 256, 538, 831, 1190 |
| BspFNI | CGCG | 2 cut(s) | 191, 357 |
| BspHI | TCATGA | 1 cut(s) | 526 |
| BspLI | GGNNCC | 3 cut(s) | 139, 861, 921 |
| BspMI | ACCTGC | 2 cut(s) | 593, 833 |
| BspOI | GCTAGC | 1 cut(s) | 44 |
| BspPI | GGATC | 7 cut(s) | 25, 80, 180, 353, 360, 714, 1076 |
| BsrDI | GCAATG | 2 cut(s) | 626, 804 |
| BsrFI | RCCGGY | 1 cut(s) | 376 |
| BsrGI | TGTACA | 1 cut(s) | 1260 |
| BsrI | ACTGG | 3 cut(s) | 1056, 1291, 1487 |
| BssAI | RCCGGY | 1 cut(s) | 376 |
| BssECI | CCNNGG | 4 cut(s) | 312, 852, 923, 1132 |
| BssNI | GRCGYC | 1 cut(s) | 107 |
| BssT1I | CCWWGG | 3 cut(s) | 852, 923, 1132 |
| Bst2UI | CCWGG | 4 cut(s) | 672, 699, 885, 1377 |
| Bst4CI | ACNGT | 3 cut(s) | 1221, 1265, 1348 |
| Bst6I | CTCTTC | 4 cut(s) | 630, 894, 1089, 1533 |
| BstACI | GRCGYC | 1 cut(s) | 107 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 803 |
| BstAUI | TGTACA | 1 cut(s) | 1260 |
| BstC8I | GCNNGC | 3 cut(s) | 42, 804, 1280 |
| BstDEI | CTNAG | 6 cut(s) | 264, 546, 818, 894, 932, 1177 |
| BstDSI | CCRYGG | 2 cut(s) | 852, 923 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 696 |
| BstF5I | GGATG | 6 cut(s) | 125, 472, 590, 694, 1069, 1117 |
| BstFNI | CGCG | 2 cut(s) | 191, 357 |
| BstHHI | GCGC | 2 cut(s) | 305, 552 |
| BstMAI | GTCTC | 4 cut(s) | 505, 1047, 1180, 1441 |
| BstMCI | CGRYCG | 2 cut(s) | 84, 195 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 37, 295, 410, 803, 848, 857 |
| BstNI | CCWGG | 4 cut(s) | 672, 699, 885, 1377 |
| BstNSI | RCATGY | 1 cut(s) | 806 |
| BstSCI | CCNGG | 5 cut(s) | 610, 670, 697, 883, 1375 |
| BstSFI | CTRYAG | 1 cut(s) | 1506 |
| BstSLI | GKGCMC | 1 cut(s) | 1392 |
| BstUI | CGCG | 2 cut(s) | 191, 357 |
| BstV1I | GCAGC | 2 cut(s) | 64, 860 |
| BstX2I | RGATCY | 3 cut(s) | 706, 1081, 1201 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 791 |
| BstYI | RGATCY | 3 cut(s) | 706, 1081, 1201 |
| BstZI | CGGCCG | 1 cut(s) | 81 |
| BsuI | GTATCC | 2 cut(s) | 60, 656 |
| BsuRI | GGCC | 7 cut(s) | 83, 376, 743, 783, 860, 1299, 1410 |
| BtgI | CCRYGG | 2 cut(s) | 852, 923 |
| BtsCI | GGATG | 6 cut(s) | 125, 472, 590, 694, 1069, 1117 |
| BtsIMutI | CAGTG | 5 cut(s) | 459, 1049, 1226, 1270, 1353 |
| BtuMI | TCGCGA | 2 cut(s) | 191, 357 |
| BveI | ACCTGC | 2 cut(s) | 593, 833 |
| Cac8I | GCNNGC | 3 cut(s) | 42, 804, 1280 |
| CciI | TCATGA | 1 cut(s) | 526 |
| CfoI | GCGC | 2 cut(s) | 305, 552 |
| Cfr10I | RCCGGY | 1 cut(s) | 376 |
| Cfr13I | GGNCC | 3 cut(s) | 781, 859, 1484 |
| CseI | GACGC | 2 cut(s) | 96, 125 |
| Csp6I | GTAC | 4 cut(s) | 274, 426, 736, 1261 |
| CviAII | CATG | 8 cut(s) | 27, 491, 527, 803, 853, 889, 924, 1019 |
| CviQI | GTAC | 4 cut(s) | 274, 426, 736, 1261 |
| DdeI | CTNAG | 6 cut(s) | 264, 546, 818, 894, 932, 1177 |
| EaeI | YGGCCR | 3 cut(s) | 81, 374, 741 |
| EagI | CGGCCG | 1 cut(s) | 81 |
| Eam1104I | CTCTTC | 4 cut(s) | 630, 894, 1089, 1533 |
| EarI | CTCTTC | 4 cut(s) | 630, 894, 1089, 1533 |
| EciI | GGCGGA | 1 cut(s) | 1118 |
| EclXI | CGGCCG | 1 cut(s) | 81 |
| Eco130I | CCWWGG | 3 cut(s) | 852, 923, 1132 |
| Eco32I | GATATC | 1 cut(s) | 624 |
| Eco47I | GGWCC | 1 cut(s) | 1484 |
| Eco52I | CGGCCG | 1 cut(s) | 81 |
| Eco57I | CTGAAG | 1 cut(s) | 151 |
| Eco88I | CYCGRG | 1 cut(s) | 61 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 696 |
| EcoRII | CCWGG | 4 cut(s) | 670, 697, 883, 1375 |
| EcoRV | GATATC | 1 cut(s) | 624 |
| EcoT14I | CCWWGG | 3 cut(s) | 852, 923, 1132 |
| EcoT22I | ATGCAT | 1 cut(s) | 804 |
| ErhI | CCWWGG | 3 cut(s) | 852, 923, 1132 |
| Esp3I | CGTCTC | 1 cut(s) | 505 |
| FaeI | CATG | 8 cut(s) | 30, 494, 530, 806, 856, 892, 927, 1022 |
| FaqI | GGGAC | 3 cut(s) | 47, 524, 1322 |
| FatI | CATG | 8 cut(s) | 26, 490, 526, 802, 852, 888, 923, 1018 |
| FauI | CCCGC | 1 cut(s) | 24 |
| FauNDI | CATATG | 2 cut(s) | 661, 1310 |
| Fnu4HI | GCNGC | 3 cut(s) | 78, 81, 849 |
| FokI | GGATG | 6 cut(s) | 112, 459, 577, 681, 1076, 1124 |
| Fsp4HI | GCNGC | 3 cut(s) | 78, 81, 849 |
| FspBI | CTAG | 4 cut(s) | 41, 480, 486, 1295 |
| GlaI | GCGC | 2 cut(s) | 304, 551 |
| GluI | GCNGC | 3 cut(s) | 78, 81, 849 |
| GsaI | CCCAGC | 2 cut(s) | 545, 782 |
| GsuI | CTGGAG | 1 cut(s) | 1398 |
| HaeIII | GGCC | 7 cut(s) | 83, 376, 743, 783, 860, 1299, 1410 |
| HapII | CCGG | 3 cut(s) | 141, 377, 611 |
| HgaI | GACGC | 2 cut(s) | 96, 125 |
| HhaI | GCGC | 2 cut(s) | 305, 552 |
| Hin1I | GRCGYC | 1 cut(s) | 107 |
| Hin1II | CATG | 8 cut(s) | 30, 494, 530, 806, 856, 892, 927, 1022 |
| Hin6I | GCGC | 2 cut(s) | 303, 550 |
| HinP1I | GCGC | 2 cut(s) | 303, 550 |
| HincII | GTYRAC | 1 cut(s) | 1226 |
| HindII | GTYRAC | 1 cut(s) | 1226 |
| HindIII | AAGCTT | 2 cut(s) | 287, 1000 |
| HinfI | GANTC | 4 cut(s) | 46, 59, 269, 1121 |
| HpaII | CCGG | 3 cut(s) | 141, 377, 611 |
| HphI | GGTGA | 3 cut(s) | 64, 215, 1337 |
| Hpy166II | GTNNAC | 2 cut(s) | 1226, 1390 |
| Hpy188III | TCNNGA | 7 cut(s) | 190, 356, 503, 527, 594, 830, 1011 |
| Hpy8I | GTNNAC | 2 cut(s) | 1226, 1390 |
| Hpy99I | CGWCG | 2 cut(s) | 106, 112 |
| HpyAV | CCTTC | 5 cut(s) | 930, 1054, 1159, 1400, 1520 |
| HpyCH4III | ACNGT | 3 cut(s) | 1221, 1265, 1348 |
| HpyCH4V | TGCA | 9 cut(s) | 404, 466, 602, 802, 842, 848, 1105, 1213, 1390 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 37, 295, 410, 803, 848, 857 |
| HpyF3I | CTNAG | 6 cut(s) | 264, 546, 818, 894, 932, 1177 |
| Hsp92I | GRCGYC | 1 cut(s) | 107 |
| Hsp92II | CATG | 8 cut(s) | 30, 494, 530, 806, 856, 892, 927, 1022 |
| HspAI | GCGC | 2 cut(s) | 303, 550 |
| LmnI | GCTCC | 7 cut(s) | 143, 151, 247, 577, 794, 1379, 1401 |
| Lsp1109I | GCAGC | 2 cut(s) | 64, 860 |
| LweI | GCATC | 1 cut(s) | 134 |
| MaeI | CTAG | 4 cut(s) | 41, 480, 486, 1295 |
| MaeIII | GTNAC | 4 cut(s) | 56, 655, 686, 1348 |
| MflI | RGATCY | 3 cut(s) | 706, 1081, 1201 |
| MhlI | GDGCHC | 1 cut(s) | 1392 |
| MlsI | TGGCCA | 1 cut(s) | 743 |
| MluNI | TGGCCA | 1 cut(s) | 743 |
| MlyI | GAGTC | 4 cut(s) | 53, 55, 263, 1130 |
| MmeI | TCCRAC | 1 cut(s) | 125 |
| Mox20I | TGGCCA | 1 cut(s) | 743 |
| Mph1103I | ATGCAT | 1 cut(s) | 804 |
| MscI | TGGCCA | 1 cut(s) | 743 |
| MseI | TTAA | 3 cut(s) | 180, 618, 711 |
| MslI | CAYNNNNRTG | 1 cut(s) | 789 |
| Msp20I | TGGCCA | 1 cut(s) | 743 |
| MspA1I | CMGCKG | 1 cut(s) | 545 |
| MspI | CCGG | 3 cut(s) | 141, 377, 611 |
| MspR9I | CCNGG | 5 cut(s) | 612, 672, 699, 885, 1377 |
| Mva1269I | GAATGC | 2 cut(s) | 1280, 1445 |
| MvaI | CCWGG | 4 cut(s) | 672, 699, 885, 1377 |
| MvnI | CGCG | 2 cut(s) | 191, 357 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 37, 295, 410, 803, 848, 857 |
| NciI | CCSGG | 1 cut(s) | 612 |
| NcoI | CCATGG | 2 cut(s) | 852, 923 |
| NdeI | CATATG | 2 cut(s) | 661, 1310 |
| NheI | GCTAGC | 1 cut(s) | 40 |
| NlaIII | CATG | 8 cut(s) | 30, 494, 530, 806, 856, 892, 927, 1022 |
| NlaIV | GGNNCC | 3 cut(s) | 139, 861, 921 |
| NmeAIII | GCCGAG | 1 cut(s) | 293 |
| NmuCI | GTSAC | 4 cut(s) | 56, 655, 686, 1348 |
| NruI | TCGCGA | 2 cut(s) | 191, 357 |
| NsiI | ATGCAT | 1 cut(s) | 804 |
| NspI | RCATGY | 1 cut(s) | 806 |
| OliI | CACNNNNGTG | 1 cut(s) | 789 |
| PaeI | GCATGC | 1 cut(s) | 806 |
| PagI | TCATGA | 1 cut(s) | 526 |
| PaqCI | CACCTGC | 1 cut(s) | 833 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 141 |
| PctI | GAATGC | 2 cut(s) | 1280, 1445 |
| PflFI | GACNNNGTC | 1 cut(s) | 106 |
| PfoI | TCCNGGA | 1 cut(s) | 610 |
| PkrI | GCNGC | 3 cut(s) | 79, 82, 850 |
| Ple19I | CGATCG | 1 cut(s) | 195 |
| PleI | GAGTC | 4 cut(s) | 53, 54, 263, 1129 |
| PpsI | GAGTC | 4 cut(s) | 53, 54, 263, 1129 |
| Psp6I | CCWGG | 4 cut(s) | 670, 697, 883, 1375 |
| PspFI | CCCAGC | 2 cut(s) | 541, 778 |
| PspGI | CCWGG | 4 cut(s) | 670, 697, 883, 1375 |
| PspN4I | GGNNCC | 3 cut(s) | 139, 861, 921 |
| PspPI | GGNCC | 3 cut(s) | 781, 859, 1484 |
| PsuI | RGATCY | 3 cut(s) | 706, 1081, 1201 |
| PsyI | GACNNNGTC | 1 cut(s) | 106 |
| PvuI | CGATCG | 1 cut(s) | 195 |
| PvuII | CAGCTG | 1 cut(s) | 545 |
| RgaI | GCGATCGC | 1 cut(s) | 195 |
| RruI | TCGCGA | 2 cut(s) | 191, 357 |
| RsaI | GTAC | 4 cut(s) | 275, 427, 737, 1262 |
| RsaNI | GTAC | 4 cut(s) | 274, 426, 736, 1261 |
| RseI | CAYNNNNRTG | 1 cut(s) | 789 |
| SaqAI | TTAA | 3 cut(s) | 180, 618, 711 |
| SatI | GCNGC | 3 cut(s) | 78, 81, 849 |
| Sau96I | GGNCC | 3 cut(s) | 781, 859, 1484 |
| SchI | GAGTC | 4 cut(s) | 53, 55, 263, 1130 |
| ScrFI | CCNGG | 5 cut(s) | 612, 672, 699, 885, 1377 |
| SduI | GDGCHC | 1 cut(s) | 1392 |
| SfaAI | GCGATCGC | 1 cut(s) | 195 |
| SfaNI | GCATC | 1 cut(s) | 134 |
| SfcI | CTRYAG | 1 cut(s) | 1506 |
| SgfI | GCGATCGC | 1 cut(s) | 195 |
| SinI | GGWCC | 1 cut(s) | 1484 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 789 |
| SmlI | CTYRAG | 2 cut(s) | 787, 1479 |
| SmoI | CTYRAG | 2 cut(s) | 787, 1479 |
| SphI | GCATGC | 1 cut(s) | 806 |
| SsiI | CCGC | 4 cut(s) | 31, 80, 649, 1129 |
| SspMI | CTAG | 4 cut(s) | 41, 480, 486, 1295 |
| StyD4I | CCNGG | 5 cut(s) | 610, 670, 697, 883, 1375 |
| StyI | CCWWGG | 3 cut(s) | 852, 923, 1132 |
| TaaI | ACNGT | 3 cut(s) | 1221, 1265, 1348 |
| TaqI | TCGA | 3 cut(s) | 20, 93, 556 |
| TaqII | GACCGA | 2 cut(s) | 438, 1367 |
| TatI | WGTACW | 2 cut(s) | 735, 1260 |
| TauI | GCSGC | 1 cut(s) | 83 |
| Tru1I | TTAA | 3 cut(s) | 180, 618, 711 |
| Tru9I | TTAA | 3 cut(s) | 180, 618, 711 |
| TscAI | CASTG | 5 cut(s) | 459, 1056, 1226, 1270, 1353 |
| TseFI | GTSAC | 4 cut(s) | 56, 655, 686, 1348 |
| TseI | GCWGC | 2 cut(s) | 77, 848 |
| Tsp45I | GTSAC | 4 cut(s) | 56, 655, 686, 1348 |
| TspDTI | ATGAA | 6 cut(s) | 431, 579, 1080, 1141, 1419, 1452 |
| TspRI | CASTG | 5 cut(s) | 459, 1056, 1226, 1270, 1353 |
| Tth111I | GACNNNGTC | 1 cut(s) | 106 |
| VneI | GTGCAC | 1 cut(s) | 1388 |
| VpaK11BI | GGWCC | 1 cut(s) | 1484 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 696 |
| XapI | RAATTY | 4 cut(s) | 418, 912, 974, 1068 |
| XceI | RCATGY | 1 cut(s) | 806 |
| XspI | CTAG | 4 cut(s) | 41, 480, 486, 1295 |
| Zsp2I | ATGCAT | 1 cut(s) | 804 |