Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8389401.1

Orthogroup ID

OG0001825

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1049

Gene Structure 1049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8389401.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atgtgtgcagctataagtataaataccgaacatgacagcttggttcgacaagtgaagagagtgcagatgcatcctcccagtgctactcatgtactacttccagatggaaggcgattggcttatcacgagcaaggtgtcccagctaaaacatctcggatttcactgattgctcctcattcttttctttcatcacgacttgcaggtatgccgggaattaaaatatcattgcttgaagagtttggtatccgtttgatcacatatgatcttcctggctttggggagagtgatcctcatcccagcaggaatcttaactcatctgcgatggatatcctgtgtttagccaatgccattggtattgaagacaagttctgggtgctgggtcactcaagtggagccatgcatgcttgggctgctcttagatacattcctgacaaagttgcaggtgcagctatggtggccccaataattaatccctatgaacctggcatgactaaggaagagatgaaaagaacttgggaaccatgggtttttagaaggaaaacaatgtacttcttagctcgtaggtttccaaagtttctaaactcttattatcgccgaagcttcctatcaggaaagcatgacagaattgacaagtggttatctctctcactgggcaagagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

220

Amino Acids

24.92

Weight (kDa)

9.87

Isoelectric Point (pI)

55.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09690 AT3G09690 AT5G02970
fragaria_vesca	FvH4_3g33440 FvH4_3g33440 FvH4_3g33440 FvH4_3g33440 FvH4_6g15410 FvH4_6g15410 FvH4_6g15410 FvH4_6g15410 FvH4_6g15410
malus_domestica	MD03G1111700.v1.1 MD04G1103800.v1.1 MD11G1126200.v1.1
prunus_persica	Prupe.6G094600_v2.0.a1 Prupe.6G240800_v2.0.a1 Prupe.6G240800_v2.0.a1 Prupe.6G240800_v2.0.a1 Prupe.6G240800_v2.0.a1
pyrus_communis	pycom04g09900 pycom11g10650 pycom12g12240
rosa_chinensis	RchiOBHm_Chr3g0468891 RchiOBHm_Chr5g0060781
rosa_laevigata	RLG00000024403 RLG00000035400
rosa_multiflora	Rmu_co8389401.1_g000001 Rmu_sc0000727.1_g000032 Rmu_sc0001639.1_g000013 Rmu_sc0003298.1_g000004 Rmu_sc0007143.1_g000009
rosa_roxburghii	Rroxscaffold_1G00019940 Rroxscaffold_6G00412480
rosa_rugosa	Rorug03G0097200 Rorug03G0097300 Rorug03G0097400 Rorug05G0334000
rosa_samantha	Rh3AG147000 Rh3BG169500 Rh3DG205600 Rh5AG396700 Rh5BG408700 Rh5CG433400 Rh5DG424000
rosa_wichuraiana	Rw3G013830 Rw5G037400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	431
Acc36I	ACCTGC	2 cut(s)	191, 431
AclWI	GGATC	1 cut(s)	281
AfaI	GTAC	2 cut(s)	93, 548
AfiI	CCNNNNNNNGG	1 cut(s)	275
AgsI	TTSAA	2 cut(s)	233, 359
AjnI	CCWGG	2 cut(s)	268, 481
AleI	CACNNNNGTG	1 cut(s)	387
AluBI	AGCT	6 cut(s)	11, 39, 143, 449, 557, 600
AluI	AGCT	6 cut(s)	11, 39, 143, 449, 557, 600
AlwI	GGATC	1 cut(s)	281
AoxI	GGCC	1 cut(s)	456
ApeKI	GCWGC	3 cut(s)	8, 410, 446
AseI	ATTAAT	1 cut(s)	468
AspS9I	GGNCC	1 cut(s)	457
AsuC2I	CCSGG	1 cut(s)	210
BauI	CACGAG	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	366
BbvI	GCAGC	3 cut(s)	20, 397, 458
BccI	CCATC	2 cut(s)	98, 316
BciT130I	CCWGG	2 cut(s)	270, 483
BciVI	GTATCC	1 cut(s)	254
BclI	TGATCA	1 cut(s)	252
BcnI	CCSGG	1 cut(s)	210
BfuAI	ACCTGC	2 cut(s)	191, 431
BfuI	GTATCC	1 cut(s)	254
BisI	GCNGC	3 cut(s)	9, 411, 447
BlsI	GCNGC	3 cut(s)	10, 412, 448
Bme1390I	CCNGG	3 cut(s)	210, 270, 483
BmgT120I	GGNCC	1 cut(s)	457
BmiI	GGNNCC	3 cut(s)	394, 459, 519
BmrFI	CCNGG	3 cut(s)	210, 270, 483
BmrI	ACTGGG	2 cut(s)	72, 659
BmsI	GCATC	2 cut(s)	57, 79
BmuI	ACTGGG	2 cut(s)	72, 659
BpiI	GAAGAC	1 cut(s)	366
BplI	GAGNNNNNCTC	2 cut(s)	274, 306
BpuEI	CTTGAG	1 cut(s)	370
BpuMI	CCSGG	1 cut(s)	210
BsaBI	GATNNNNATC	2 cut(s)	291, 326
BsaJI	CCNNGG	1 cut(s)	521
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	2 cut(s)	78, 654
Bse3DI	GCAATG	1 cut(s)	224
Bse8I	GATNNNNATC	2 cut(s)	291, 326
BseBI	CCWGG	2 cut(s)	270, 483
BseDI	CCNNGG	1 cut(s)	521
BseGI	GGATG	2 cut(s)	70, 292
BseJI	GATNNNNATC	2 cut(s)	291, 326
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMI	GCAATG	1 cut(s)	224
BseNI	ACTGG	2 cut(s)	78, 654
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	3 cut(s)	20, 397, 458
BseYI	CCCAGC	3 cut(s)	139, 296, 376
BsgI	GTGCAG	3 cut(s)	27, 83, 465
BshFI	GGCC	1 cut(s)	458
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	458
Bsp143I	GATC	3 cut(s)	252, 262, 286
Bsp19I	CCATGG	1 cut(s)	521
BspANI	GGCC	1 cut(s)	458
BspLI	GGNNCC	3 cut(s)	394, 459, 519
BspMI	ACCTGC	2 cut(s)	191, 431
BspPI	GGATC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	78, 654
BssECI	CCNNGG	1 cut(s)	521
BssMI	GATC	3 cut(s)	252, 262, 286
BssSI	CACGAG	1 cut(s)	125
BssT1I	CCWWGG	1 cut(s)	521
Bst2BI	CACGAG	1 cut(s)	125
Bst2UI	CCWGG	2 cut(s)	270, 483
Bst6I	CTCTTC	3 cut(s)	50, 228, 492
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	3 cut(s)	416, 492, 553
BstDSI	CCRYGG	1 cut(s)	521
BstF5I	GGATG	2 cut(s)	70, 292
BstKTI	GATC	3 cut(s)	255, 265, 289
BstMBI	GATC	3 cut(s)	252, 262, 286
BstMWI	GCNNNNNNNGC	4 cut(s)	401, 410, 446, 455
BstNI	CCWGG	2 cut(s)	270, 483
BstNSI	RCATGY	1 cut(s)	404
BstSCI	CCNGG	3 cut(s)	208, 268, 481
BstV1I	GCAGC	3 cut(s)	20, 397, 458
BstV2I	GAAGAC	1 cut(s)	366
BsuI	GTATCC	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	458
BtgI	CCRYGG	1 cut(s)	521
BtgZI	GCGATG	1 cut(s)	335
BtsCI	GGATG	2 cut(s)	70, 292
BtsIMutI	CAGTG	3 cut(s)	85, 161, 647
BveI	ACCTGC	2 cut(s)	191, 431
Cac8I	GCNNGC	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	457
Csp6I	GTAC	2 cut(s)	92, 547
CviAII	CATG	7 cut(s)	32, 89, 397, 401, 487, 522, 617
CviQI	GTAC	2 cut(s)	92, 547
DdeI	CTNAG	3 cut(s)	416, 492, 553
DpnI	GATC	3 cut(s)	254, 264, 288
DpnII	GATC	3 cut(s)	252, 262, 286
Eam1104I	CTCTTC	3 cut(s)	50, 228, 492
EarI	CTCTTC	3 cut(s)	50, 228, 492
Eco130I	CCWWGG	1 cut(s)	521
Eco32I	GATATC	1 cut(s)	328
EcoRII	CCWGG	2 cut(s)	268, 481
EcoRV	GATATC	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	521
EcoT22I	ATGCAT	2 cut(s)	72, 402
ErhI	CCWWGG	1 cut(s)	521
FaeI	CATG	7 cut(s)	35, 92, 400, 404, 490, 525, 620
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	7 cut(s)	31, 88, 396, 400, 486, 521, 616
FauNDI	CATATG	1 cut(s)	259
FbaI	TGATCA	1 cut(s)	252
Fnu4HI	GCNGC	3 cut(s)	9, 411, 447
FokI	GGATG	2 cut(s)	57, 279
Fsp4HI	GCNGC	3 cut(s)	9, 411, 447
GluI	GCNGC	3 cut(s)	9, 411, 447
GsaI	CCCAGC	3 cut(s)	143, 300, 380
HaeIII	GGCC	1 cut(s)	458
HapII	CCGG	1 cut(s)	209
Hin1II	CATG	7 cut(s)	35, 92, 400, 404, 490, 525, 620
HindIII	AAGCTT	1 cut(s)	598
HinfI	GANTC	1 cut(s)	304
HpaII	CCGG	1 cut(s)	209
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	5 cut(s)	101, 125, 192, 428, 609
HpyAV	CCTTC	2 cut(s)	102, 528
HpyCH4V	TGCA	7 cut(s)	8, 64, 70, 200, 400, 440, 446
HpyF10VI	GCNNNNNNNGC	4 cut(s)	401, 410, 446, 455
HpyF3I	CTNAG	3 cut(s)	416, 492, 553
Hsp92II	CATG	7 cut(s)	35, 92, 400, 404, 490, 525, 620
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	3 cut(s)	252, 262, 286
LmnI	GCTCC	2 cut(s)	175, 392
Lsp1109I	GCAGC	3 cut(s)	20, 397, 458
LweI	GCATC	2 cut(s)	57, 79
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	3 cut(s)	254, 264, 288
MboI	GATC	3 cut(s)	252, 262, 286
MboII	GAAGA	5 cut(s)	67, 245, 257, 371, 509
MluCI	AATT	3 cut(s)	213, 465, 624
MnlI	CCTC	4 cut(s)	84, 183, 300, 651
Mph1103I	ATGCAT	2 cut(s)	72, 402
MseI	TTAA	3 cut(s)	216, 309, 468
MslI	CAYNNNNRTG	1 cut(s)	387
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	3 cut(s)	210, 270, 483
MvaI	CCWGG	2 cut(s)	270, 483
MwoI	GCNNNNNNNGC	4 cut(s)	401, 410, 446, 455
NciI	CCSGG	1 cut(s)	210
NcoI	CCATGG	1 cut(s)	521
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	3 cut(s)	252, 262, 286
NlaIII	CATG	7 cut(s)	35, 92, 400, 404, 490, 525, 620
NlaIV	GGNNCC	3 cut(s)	394, 459, 519
NmuCI	GTSAC	1 cut(s)	380
NsiI	ATGCAT	2 cut(s)	72, 402
NspI	RCATGY	1 cut(s)	404
OliI	CACNNNNGTG	1 cut(s)	387
PaeI	GCATGC	1 cut(s)	404
PaqCI	CACCTGC	1 cut(s)	431
PfeI	GAWTC	1 cut(s)	304
PkrI	GCNGC	3 cut(s)	10, 412, 448
PshBI	ATTAAT	1 cut(s)	468
Psp6I	CCWGG	2 cut(s)	268, 481
PspFI	CCCAGC	3 cut(s)	139, 296, 376
PspGI	CCWGG	2 cut(s)	268, 481
PspN4I	GGNNCC	3 cut(s)	394, 459, 519
PspPI	GGNCC	1 cut(s)	457
RsaI	GTAC	2 cut(s)	93, 548
RsaNI	GTAC	2 cut(s)	92, 547
RseI	CAYNNNNRTG	1 cut(s)	387
SaqAI	TTAA	3 cut(s)	216, 309, 468
SatI	GCNGC	3 cut(s)	9, 411, 447
Sau3AI	GATC	3 cut(s)	252, 262, 286
Sau96I	GGNCC	1 cut(s)	457
ScrFI	CCNGG	3 cut(s)	210, 270, 483
SfaNI	GCATC	2 cut(s)	57, 79
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	385
SmoI	CTYRAG	1 cut(s)	385
SphI	GCATGC	1 cut(s)	404
Sse9I	AATT	3 cut(s)	213, 465, 624
StyD4I	CCNGG	3 cut(s)	208, 268, 481
StyI	CCWWGG	1 cut(s)	521
TaqI	TCGA	1 cut(s)	46
TasI	AATT	3 cut(s)	213, 465, 624
TatI	WGTACW	2 cut(s)	91, 546
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	3 cut(s)	216, 309, 468
Tru9I	TTAA	3 cut(s)	216, 309, 468
TscAI	CASTG	3 cut(s)	85, 168, 654
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	3 cut(s)	8, 410, 446
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	3 cut(s)	177, 492, 518
TspGWI	ACGGA	1 cut(s)	236
TspRI	CASTG	3 cut(s)	85, 168, 654
VspI	ATTAAT	1 cut(s)	468
XceI	RCATGY	1 cut(s)	404
Zsp2I	ATGCAT	2 cut(s)	72, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.