Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0012659

Physical Location & Seq

Genomic Coordinates Reverse (-)

12156041 .. 12161981

Gene Structure 5941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1126700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCCTTTACCAAGCTTTTCTTCATTTTGTCTTTGTTCATGTTGTCACTCTCAAGCACCCATTTCAGCCTTGCAGCTCGAAACCTTTTGGCCACGCCGGGAGCTCCACCACCGGCCTTGACTGTGCCTACAATCCCGTCTCTGCCGAAGCCAACATTGCCCACATTGCCGCCAATGCCCTCAGTACCAACACTGCCCAAGGCCACATTGCCGCCGTTGCCCTCTACTCAATTGCCTACCCTCCCGACTAACCCAACTCTACCACCACTCCCGAGGACCCAAATCCCAACTTTACCACAACCAGCATTGCCTACAATGCCCACAATCCCAAAGGTGACACTACCTCCTTTGCCAGCACTCCCCACTTTTCCAACAACAATCCCTTCAATCTCTAGTATTCCATCAATTCCATTCTTCTCCCCACCCCCATCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

15.27

Weight (kDa)

12.0

Isoelectric Point (pI)

69.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012659)

Species	Orthologous Gene IDs
malus_domestica	MD03G1126700.v1.1
prunus_persica	Prupe.6G111400_v2.0.a1 Prupe.6G197700_v2.0.a1 Prupe.6G197800_v2.0.a1 Prupe.6G197900_v2.0.a1 Prupe.6G198000_v2.0.a1 Prupe.6G198100_v2.0.a1
pyrus_communis	pycom15g27790
rosa_chinensis	RchiOBHm_Chr2g0111391 RchiOBHm_Chr2g0111401
rosa_roxburghii	Rroxscaffold_2G00132410 Rroxscaffold_2G00132420
rosa_samantha	Rh2AG226600 Rh2BG238300 Rh2BG238400 Rh2CG229700 Rh2DG234000
rosa_wichuraiana	Rw2G017480 Rw2G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	170, 212
AcoI	YGGCCR	1 cut(s)	90
AfaI	GTAC	1 cut(s)	186
AgsI	TTSAA	1 cut(s)	387
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AluBI	AGCT	3 cut(s)	16, 77, 104
AluI	AGCT	3 cut(s)	16, 77, 104
Alw21I	GWGCWC	1 cut(s)	106
Alw26I	GTCTC	1 cut(s)	144
Ama87I	CYCGRG	1 cut(s)	271
AoxI	GGCC	4 cut(s)	3, 90, 114, 201
ApeKI	GCWGC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	276
AsuC2I	CCSGG	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	346
AvaI	CYCGRG	1 cut(s)	271
AvaII	GGWCC	1 cut(s)	276
BalI	TGGCCA	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	2 cut(s)	409, 436
BceAI	ACGGC	1 cut(s)	199
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	1 cut(s)	393
BisI	GCNGC	3 cut(s)	75, 170, 212
BlsI	GCNGC	3 cut(s)	76, 171, 213
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	1 cut(s)	276
BmeT110I	CYCGRG	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	99
BsaJI	CCNNGG	2 cut(s)	198, 272
BsaXI	ACNNNNNCTCC	4 cut(s)	252, 282, 328, 358
Bse118I	RCCGGY	1 cut(s)	112
Bse3DI	GCAATG	4 cut(s)	155, 164, 206, 305
BseDI	CCNNGG	2 cut(s)	198, 272
BseMI	GCAATG	4 cut(s)	155, 164, 206, 305
BseMII	CTCAG	1 cut(s)	195
BseXI	GCAGC	1 cut(s)	86
BshFI	GGCC	4 cut(s)	5, 92, 116, 203
BsiHKAI	GWGCWC	1 cut(s)	106
BsiHKCI	CYCGRG	1 cut(s)	271
BsiSI	CCGG	2 cut(s)	98, 113
BsmAI	GTCTC	1 cut(s)	144
BsmBI	CGTCTC	1 cut(s)	144
BsnI	GGCC	4 cut(s)	5, 92, 116, 203
BsoBI	CYCGRG	1 cut(s)	271
Bsp1286I	GDGCHC	1 cut(s)	106
BspACI	CCGC	2 cut(s)	170, 212
BspANI	GGCC	4 cut(s)	5, 92, 116, 203
BspCNI	CTCAG	1 cut(s)	194
BspLI	GGNNCC	1 cut(s)	278
BsrDI	GCAATG	4 cut(s)	155, 164, 206, 305
BsrFI	RCCGGY	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	2 cut(s)	198, 272
BssT1I	CCWWGG	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	1 cut(s)	181
BstMAI	GTCTC	1 cut(s)	144
BstMWI	GCNNNNNNNGC	5 cut(s)	157, 166, 175, 217, 316
BstSCI	CCNGG	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	86
BsuRI	GGCC	4 cut(s)	5, 92, 116, 203
BtsI	GCAGTG	1 cut(s)	191
BtsIMutI	CAGTG	1 cut(s)	191
Cac8I	GCNNGC	1 cut(s)	354
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	185
CspCI	CAANNNNNGTGG	2 cut(s)	99, 134
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	9 cut(s)	5, 16, 69, 77, 92, 104, 116, 151, 203
CviKI_1	RGCY	9 cut(s)	5, 16, 69, 77, 92, 104, 116, 151, 203
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	1 cut(s)	181
EaeI	YGGCCR	1 cut(s)	90
Ecl136II	GAGCTC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	198
Eco24I	GRGCYC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	276
Eco53kI	GAGCTC	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	271
EcoICRI	GAGCTC	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	198
Esp3I	CGTCTC	1 cut(s)	144
FaeI	CATG	1 cut(s)	43
FaiI	YATR	1 cut(s)	41
FalI	AAGNNNNNCTT	1 cut(s)	37
FatI	CATG	1 cut(s)	39
Fnu4HI	GCNGC	3 cut(s)	75, 170, 212
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	3 cut(s)	75, 170, 212
FspBI	CTAG	1 cut(s)	393
GluI	GCNGC	3 cut(s)	75, 170, 212
HaeIII	GGCC	4 cut(s)	5, 92, 116, 203
HapII	CCGG	2 cut(s)	98, 113
Hin1II	CATG	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	14
HpaII	CCGG	2 cut(s)	98, 113
HphI	GGTGA	1 cut(s)	346
Hpy188III	TCNNGA	2 cut(s)	244, 271
HpyAV	CCTTC	1 cut(s)	393
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	1 cut(s)	74
HpyF10VI	GCNNNNNNNGC	5 cut(s)	157, 166, 175, 217, 316
HpyF3I	CTNAG	1 cut(s)	181
Hsp92II	CATG	1 cut(s)	43
LmnI	GCTCC	2 cut(s)	101, 109
LpnPI	CCDG	4 cut(s)	111, 126, 315, 366
Lsp1109I	GCAGC	1 cut(s)	86
MaeI	CTAG	1 cut(s)	393
MaeIII	GTNAC	2 cut(s)	45, 334
MboII	GAAGA	2 cut(s)	13, 406
MfeI	CAATTG	1 cut(s)	230
MhlI	GDGCHC	1 cut(s)	106
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	2 cut(s)	230, 405
MluNI	TGGCCA	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	395
MnlI	CCTC	5 cut(s)	190, 232, 251, 267, 354
Mox20I	TGGCCA	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	92
MslI	CAYNNNNRTG	1 cut(s)	433
Msp20I	TGGCCA	1 cut(s)	92
MspI	CCGG	2 cut(s)	98, 113
MspR9I	CCNGG	1 cut(s)	99
MunI	CAATTG	1 cut(s)	230
MwoI	GCNNNNNNNGC	5 cut(s)	157, 166, 175, 217, 316
NciI	CCSGG	1 cut(s)	99
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	1 cut(s)	278
NmuCI	GTSAC	2 cut(s)	45, 334
PkrI	GCNGC	3 cut(s)	76, 171, 213
PpuMI	RGGWCCY	1 cut(s)	276
Psp124BI	GAGCTC	1 cut(s)	106
Psp5II	RGGWCCY	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	278
PspPI	GGNCC	1 cut(s)	276
PspPPI	RGGWCCY	1 cut(s)	276
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
RseI	CAYNNNNRTG	1 cut(s)	433
SacI	GAGCTC	1 cut(s)	106
SatI	GCNGC	3 cut(s)	75, 170, 212
Sau96I	GGNCC	1 cut(s)	276
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	106
SetI	ASST	6 cut(s)	18, 79, 87, 106, 336, 346
SinI	GGWCC	1 cut(s)	276
SmiMI	CAYNNNNRTG	1 cut(s)	433
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	2 cut(s)	230, 405
SsiI	CCGC	2 cut(s)	170, 212
SspMI	CTAG	1 cut(s)	393
SstI	GAGCTC	1 cut(s)	106
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	124
TaqI	TCGA	1 cut(s)	79
TasI	AATT	2 cut(s)	230, 405
TauI	GCSGC	2 cut(s)	172, 214
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	2 cut(s)	45, 334
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	2 cut(s)	45, 334
TspDTI	ATGAA	2 cut(s)	13, 28
TspRI	CASTG	1 cut(s)	198
VpaK11BI	GGWCC	1 cut(s)	276
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.