Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0012659

Physical Location & Seq

Genomic Coordinates Forward (+)

23703508 .. 23717125

Gene Structure 13618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG238300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAACATTTTCTCCAACCCAATGCCAAAGGCTATTGAATCAGAAAGCCAAGAATTGGAGCTGGATCTTTCAAGTTTAGGTGCTGTAAATACCATCTCCATTAATTTCAATGATGGCTCTTCCCAAGCAGTTCTTCGTTCTGTCTTTGGTCGCAGTCTTGTCGCTCTCGAGCACCCAAATGAACCAAGCAACTCGCCATCTCTTGGACACAGCAGCAGCTCCTCCACCAGCACTGCCAGTAGTGCCCGCGATTCCCTCTGTGCCCAAGACTGCATTGCCTCCACTGCCCTCGGCACCGACACTGCCCAAGGCCACCCTGCCCCCGTTGCCCTCGATACCAACACTGCCCAAGGCCACATTGCCACCATTGCCCTCAAATCCCTTACCTACACTGCCAACTACCCCAACTTCTCCAAAGGCCACCTTGCCACCATTGCCATCTACTCCGTTGCCTACATCGCCTACCACCCCACCTGTAATCCCATCTTTGCCAAAATCAGCATTGCCTACTGTGCCGACAACCCCCTTGTCTGCGACACTACCTCCATTGCCAGCCAGCTCACTACCAACACTACCCAAGGCCACATTGCCACCCCTGCCCTCAAACCCCTTGCCTTCACTTCCGACTGCCCCAACTCTGCCAAAGGCCACATTGCCGCCAATACCATCTTTTCCGAAATCAGCATTGCCTACAACACCCTTGCCAACTACACTACCTCCATTGCCGGCCAACTCACTACCTACACTCCCGCCAACAATCCCCAAAACTCCATCCGCAATTCCTTCGACTCCTTTCCTCTCTCCACCCCCATCAAACTGAACCACTTGATATTTAAAAAAAATAAAAAAAATATCAATTCTACAAACCAGTACATGGCCATTGTTAGTATTGTCATCTCATCATCACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

303

Amino Acids

32.02

Weight (kDa)

6.48

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012659)

Species	Orthologous Gene IDs
malus_domestica	MD03G1126700.v1.1
prunus_persica	Prupe.6G111400_v2.0.a1 Prupe.6G197700_v2.0.a1 Prupe.6G197800_v2.0.a1 Prupe.6G197900_v2.0.a1 Prupe.6G198000_v2.0.a1 Prupe.6G198100_v2.0.a1
pyrus_communis	pycom15g27790
rosa_chinensis	RchiOBHm_Chr2g0111391 RchiOBHm_Chr2g0111401
rosa_roxburghii	Rroxscaffold_2G00132410 Rroxscaffold_2G00132420
rosa_samantha	Rh2AG226600 Rh2BG238300 Rh2BG238400 Rh2CG229700 Rh2DG234000
rosa_wichuraiana	Rw2G017480 Rw2G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	293
AccB7I	CCANNNNNTGG	3 cut(s)	55, 203, 874
AccII	CGCG	1 cut(s)	249
AciI	CCGC	4 cut(s)	247, 657, 750, 775
AclWI	GGATC	1 cut(s)	72
AcoI	YGGCCR	2 cut(s)	727, 876
AfaI	GTAC	1 cut(s)	872
AfiI	CCNNNNNNNGG	3 cut(s)	55, 203, 874
AgsI	TTSAA	3 cut(s)	38, 72, 109
AjuI	GAANNNNNNNTTGG	2 cut(s)	117, 149
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	3 cut(s)	61, 219, 559
AluI	AGCT	3 cut(s)	61, 219, 559
Alw21I	GWGCWC	1 cut(s)	174
AlwI	GGATC	1 cut(s)	72
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	7 cut(s)	310, 352, 418, 580, 646, 727, 876
ApeKI	GCWGC	2 cut(s)	213, 216
AseI	ATTAAT	1 cut(s)	102
Asp700I	GAANNNNTTC	1 cut(s)	8
AvaI	CYCGRG	1 cut(s)	167
BaeGI	GKGCMC	2 cut(s)	247, 265
BalI	TGGCCA	1 cut(s)	878
BanI	GGYRCC	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	225, 228
BccI	CCATC	8 cut(s)	101, 107, 205, 446, 491, 674, 779, 818
BcgI	CGANNNNNNTGC	4 cut(s)	142, 176, 766, 800
BisI	GCNGC	3 cut(s)	214, 217, 657
BlsI	GCNGC	3 cut(s)	215, 218, 658
BmeT110I	CYCGRG	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	295
BsaJI	CCNNGG	4 cut(s)	289, 307, 349, 577
BsaXI	ACNNNNNCTCC	7 cut(s)	26, 527, 557, 701, 730, 731, 760
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 203, 874
Bse118I	RCCGGY	1 cut(s)	725
Bse1I	ACTGG	2 cut(s)	237, 868
BseDI	CCNNGG	4 cut(s)	289, 307, 349, 577
BseGI	GGATG	1 cut(s)	771
BseLI	CCNNNNNNNGG	3 cut(s)	55, 203, 874
BseNI	ACTGG	2 cut(s)	237, 868
BseRI	GAGGAG	1 cut(s)	211
BseSI	GKGCMC	2 cut(s)	247, 265
BseXI	GCAGC	2 cut(s)	225, 228
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	7 cut(s)	312, 354, 420, 582, 648, 729, 878
BshNI	GGYRCC	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	726
BslI	CCNNNNNNNGG	3 cut(s)	55, 203, 874
BsnI	GGCC	7 cut(s)	312, 354, 420, 582, 648, 729, 878
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	3 cut(s)	174, 247, 265
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	4 cut(s)	247, 657, 750, 775
BspANI	GGCC	7 cut(s)	312, 354, 420, 582, 648, 729, 878
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	295
BspPI	GGATC	1 cut(s)	72
BspQI	GCTCTTC	1 cut(s)	124
BspT107I	GGYRCC	1 cut(s)	293
BsrFI	RCCGGY	1 cut(s)	725
BsrI	ACTGG	2 cut(s)	237, 868
BssAI	RCCGGY	1 cut(s)	725
BssECI	CCNNGG	4 cut(s)	289, 307, 349, 577
BssMI	GATC	1 cut(s)	64
BssT1I	CCWWGG	3 cut(s)	307, 349, 577
Bst4CI	ACNGT	1 cut(s)	512
Bst6I	CTCTTC	1 cut(s)	124
BstC8I	GCNNGC	4 cut(s)	247, 553, 557, 727
BstF5I	GGATG	1 cut(s)	771
BstFNI	CGCG	1 cut(s)	249
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	8 cut(s)	242, 284, 326, 368, 434, 458, 512, 596
BstSLI	GKGCMC	2 cut(s)	247, 265
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	2 cut(s)	225, 228
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	7 cut(s)	312, 354, 420, 582, 648, 729, 878
BtgZI	GCGATG	1 cut(s)	442
BtsCI	GGATG	1 cut(s)	771
BtsI	GCAGTG	5 cut(s)	231, 282, 300, 342, 390
BtsIMutI	CAGTG	5 cut(s)	231, 282, 300, 342, 390
Cac8I	GCNNGC	4 cut(s)	247, 553, 557, 727
Cfr10I	RCCGGY	1 cut(s)	725
Csp6I	GTAC	1 cut(s)	871
CviAII	CATG	1 cut(s)	874
CviQI	GTAC	1 cut(s)	871
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
DraI	TTTAAA	1 cut(s)	835
EaeI	YGGCCR	2 cut(s)	727, 876
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco130I	CCWWGG	3 cut(s)	307, 349, 577
Eco88I	CYCGRG	1 cut(s)	167
EcoT14I	CCWWGG	3 cut(s)	307, 349, 577
ErhI	CCWWGG	3 cut(s)	307, 349, 577
FaeI	CATG	1 cut(s)	877
FaiI	YATR	1 cut(s)	875
FalI	AAGNNNNNCTT	4 cut(s)	117, 149, 408, 440
FatI	CATG	1 cut(s)	873
FauI	CCCGC	2 cut(s)	254, 757
Fnu4HI	GCNGC	3 cut(s)	214, 217, 657
FokI	GGATG	1 cut(s)	758
Fsp4HI	GCNGC	3 cut(s)	214, 217, 657
GluI	GCNGC	3 cut(s)	214, 217, 657
HaeIII	GGCC	7 cut(s)	312, 354, 420, 582, 648, 729, 878
HapII	CCGG	1 cut(s)	726
Hin1II	CATG	1 cut(s)	877
HinfI	GANTC	3 cut(s)	38, 251, 788
HpaII	CCGG	1 cut(s)	726
Hpy188I	TCNGA	3 cut(s)	43, 625, 676
Hpy188III	TCNNGA	1 cut(s)	167
HpyAV	CCTTC	2 cut(s)	625, 793
HpyCH4III	ACNGT	1 cut(s)	512
HpyCH4V	TGCA	1 cut(s)	273
HpyF10VI	GCNNNNNNNGC	8 cut(s)	242, 284, 326, 368, 434, 458, 512, 596
Hsp92II	CATG	1 cut(s)	877
KroI	GCCGGC	1 cut(s)	725
KroNI	GCCGGC	1 cut(s)	727
Kzo9I	GATC	1 cut(s)	64
LguI	GCTCTTC	1 cut(s)	124
LmnI	GCTCC	2 cut(s)	58, 224
Lsp1109I	GCAGC	2 cut(s)	225, 228
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	2 cut(s)	111, 125
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	3 cut(s)	174, 247, 265
MlsI	TGGCCA	1 cut(s)	878
MluCI	AATT	4 cut(s)	53, 103, 778, 856
MluNI	TGGCCA	1 cut(s)	878
MlyI	GAGTC	1 cut(s)	782
MmeI	TCCRAC	2 cut(s)	39, 648
Mox20I	TGGCCA	1 cut(s)	878
MroNI	GCCGGC	1 cut(s)	725
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	878
MseI	TTAA	2 cut(s)	102, 834
MslI	CAYNNNNRTG	1 cut(s)	177
Msp20I	TGGCCA	1 cut(s)	878
MspI	CCGG	1 cut(s)	726
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	8 cut(s)	242, 284, 326, 368, 434, 458, 512, 596
NaeI	GCCGGC	1 cut(s)	727
NdeII	GATC	1 cut(s)	64
NgoMIV	GCCGGC	1 cut(s)	725
NlaIII	CATG	1 cut(s)	877
NlaIV	GGNNCC	1 cut(s)	295
NmeAIII	GCCGAG	1 cut(s)	270
PaeR7I	CTCGAG	1 cut(s)	167
PciSI	GCTCTTC	1 cut(s)	124
PdiI	GCCGGC	1 cut(s)	727
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	38, 251
PflMI	CCANNNNNTGG	3 cut(s)	55, 203, 874
PkrI	GCNGC	3 cut(s)	215, 218, 658
PleI	GAGTC	1 cut(s)	782
PpsI	GAGTC	1 cut(s)	782
PshBI	ATTAAT	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	1 cut(s)	872
RsaNI	GTAC	1 cut(s)	871
RseI	CAYNNNNRTG	1 cut(s)	177
SapI	GCTCTTC	1 cut(s)	124
SaqAI	TTAA	2 cut(s)	102, 834
SatI	GCNGC	3 cut(s)	214, 217, 657
Sau3AI	GATC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	782
SduI	GDGCHC	3 cut(s)	174, 247, 265
Sfr274I	CTCGAG	1 cut(s)	167
SlaI	CTCGAG	1 cut(s)	167
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	4 cut(s)	53, 103, 778, 856
SsiI	CCGC	4 cut(s)	247, 657, 750, 775
StyI	CCWWGG	3 cut(s)	307, 349, 577
TaaI	ACNGT	1 cut(s)	512
TaqI	TCGA	3 cut(s)	168, 333, 786
TasI	AATT	4 cut(s)	53, 103, 778, 856
TatI	WGTACW	1 cut(s)	870
TauI	GCSGC	1 cut(s)	659
TfiI	GAWTC	2 cut(s)	38, 251
Tru1I	TTAA	2 cut(s)	102, 834
Tru9I	TTAA	2 cut(s)	102, 834
TscAI	CASTG	5 cut(s)	238, 289, 307, 349, 397
TseI	GCWGC	2 cut(s)	213, 216
TspDTI	ATGAA	2 cut(s)	17, 195
TspGWI	ACGGA	1 cut(s)	436
TspRI	CASTG	5 cut(s)	238, 289, 307, 349, 397
Van91I	CCANNNNNTGG	3 cut(s)	55, 203, 874
VspI	ATTAAT	1 cut(s)	102
XhoI	CTCGAG	1 cut(s)	167
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.