Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012659

Physical Location & Seq

Genomic Coordinates Reverse (-)

69406896 .. 69409935

Gene Structure 3040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00132420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGACTCTTCCCAAGCAGTTCTTCGTTCTATCTTTGGTCGCTGTCTTGTCGCTCTCGAGCACCCAAATGAGCCAAGGAGCTCGCCACCTCTTGGACACAGCAGCAGCTCCTCCACCAGCACTGCCAGTAGTGCCCACAATTCCCTCTCTGCCCAAGACTGCATTGCCTCCACTACCCTCGCCACCGACACTGCCTAAGGCCACCCTGCCCCCATTGCCCTCGATACCAACACTGCCCAAGGCCACATTACCACCATTGCCCTCAAATCCCTGGCCTACACTTCCAACTACCCCAACTGTTCCAAAAGCCACCTTGCCACCATTGCCATCTACCCCATTGCCTACACAGCCTACCACCCCACCTGTAATCCCATCTTTGCCAAAATCAGCGACACTACCTCCATTGCCAGCTAGCTCACTACCAACACTACCCAAGGCCTCATTGCCACCTCTGCCCTCAAACTCCTTGCCTTCACTTCCGACTGCCCCAACTCTGCCAAAGGCCACATTGCCGCCATTGCCATCAATCCCATCTTTGCCGAAATCAGCATTCCCTACAACATCCTTGCCAACTACACTACCTCCGTTGCCGGCCAACTCCCTTCCTACACTCCCGACAACAATCCCCAATACTCCATCCGCAATTCCTTGGATTCCGTTCCTCTCTCCACCCCCCATCAAACTGAACCACTTGATATCTAAAAAACAAAAAAATCAATGTGATCCTTCATATGCTATTGTTCTTGGATGTGTTGAACATTTTTCCGATATGGATCAACTCCAAGAAAGTCGGAGCAGCGAAAACCCTAAGAAAAATTTTCTATGCCGCATCCGGCGGCTCGTCCATGGGACGTCGTCGTCGGACGGGCGAACTTGTTGTGTCAGTCCACCGGTGAGGGCCAAGAGGTTTTGGGCAAGAATAGAGGGCTGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

311

Amino Acids

32.94

Weight (kDa)

10.08

Isoelectric Point (pI)

70.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012659)

Species	Orthologous Gene IDs
malus_domestica	MD03G1126700.v1.1
prunus_persica	Prupe.6G111400_v2.0.a1 Prupe.6G197700_v2.0.a1 Prupe.6G197800_v2.0.a1 Prupe.6G197900_v2.0.a1 Prupe.6G198000_v2.0.a1 Prupe.6G198100_v2.0.a1
pyrus_communis	pycom15g27790
rosa_chinensis	RchiOBHm_Chr2g0111391 RchiOBHm_Chr2g0111401
rosa_roxburghii	Rroxscaffold_2G00132410 Rroxscaffold_2G00132420
rosa_samantha	Rh2AG226600 Rh2BG238300 Rh2BG238400 Rh2CG229700 Rh2DG234000
rosa_wichuraiana	Rw2G017480 Rw2G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	856
AatII	GACGTC	1 cut(s)	854
AccB7I	CCANNNNNTGG	1 cut(s)	91
AciI	CCGC	4 cut(s)	512, 639, 826, 835
AclWI	GGATC	2 cut(s)	716, 780
AcoI	YGGCCR	1 cut(s)	591
AcsI	RAATTY	1 cut(s)	814
AcyI	GRCGYC	1 cut(s)	851
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgeI	ACCGGT	1 cut(s)	889
AgsI	TTSAA	1 cut(s)	755
AjnI	CCWGG	1 cut(s)	269
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AluBI	AGCT	4 cut(s)	80, 107, 410, 414
AluI	AGCT	4 cut(s)	80, 107, 410, 414
Alw21I	GWGCWC	2 cut(s)	62, 82
AlwI	GGATC	2 cut(s)	716, 780
Ama87I	CYCGRG	1 cut(s)	55
AoxI	GGCC	7 cut(s)	198, 240, 272, 435, 501, 591, 897
ApeKI	GCWGC	3 cut(s)	101, 104, 795
ApoI	RAATTY	1 cut(s)	814
AsiGI	ACCGGT	1 cut(s)	889
AspS9I	GGNCC	1 cut(s)	897
AsuHPI	GGTGA	1 cut(s)	904
AsuNHI	GCTAGC	1 cut(s)	410
AvaI	CYCGRG	1 cut(s)	55
AxyI	CCTNAGG	1 cut(s)	195
BaeGI	GKGCMC	1 cut(s)	135
BanII	GRGCYC	1 cut(s)	82
Bbv12I	GWGCWC	2 cut(s)	62, 82
BbvI	GCAGC	3 cut(s)	113, 116, 807
BccI	CCATC	6 cut(s)	334, 379, 529, 538, 643, 683
BciT130I	CCWGG	1 cut(s)	271
BfaI	CTAG	1 cut(s)	411
BisI	GCNGC	6 cut(s)	102, 105, 512, 796, 826, 836
BlsI	GCNGC	6 cut(s)	103, 106, 513, 797, 827, 837
Bme1390I	CCNGG	1 cut(s)	271
BmeT110I	CYCGRG	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	897
BmrFI	CCNGG	1 cut(s)	271
BmsI	GCATC	1 cut(s)	837
BmtI	GCTAGC	1 cut(s)	414
BsaBI	GATNNNNATC	1 cut(s)	771
BsaHI	GRCGYC	1 cut(s)	851
BsaJI	CCNNGG	6 cut(s)	73, 237, 269, 432, 647, 844
BsaWI	WCCGGW	1 cut(s)	889
BsaXI	ACNNNNNCTCC	4 cut(s)	382, 412, 565, 595
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse118I	RCCGGY	2 cut(s)	589, 889
Bse1I	ACTGG	1 cut(s)	125
Bse21I	CCTNAGG	1 cut(s)	195
Bse3DI	GCAATG	9 cut(s)	161, 212, 254, 320, 335, 401, 440, 506, 515
Bse8I	GATNNNNATC	1 cut(s)	771
BseBI	CCWGG	1 cut(s)	271
BseDI	CCNNGG	6 cut(s)	73, 237, 269, 432, 647, 844
BseGI	GGATG	4 cut(s)	560, 635, 752, 828
BseJI	GATNNNNATC	1 cut(s)	771
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMI	GCAATG	9 cut(s)	161, 212, 254, 320, 335, 401, 440, 506, 515
BseNI	ACTGG	1 cut(s)	125
BseRI	GAGGAG	1 cut(s)	99
BseSI	GKGCMC	1 cut(s)	135
BseXI	GCAGC	3 cut(s)	113, 116, 807
BseYI	CCCAGC	1 cut(s)	927
BshFI	GGCC	7 cut(s)	200, 242, 274, 437, 503, 593, 899
BshTI	ACCGGT	1 cut(s)	889
BsiHKAI	GWGCWC	2 cut(s)	62, 82
BsiHKCI	CYCGRG	1 cut(s)	55
BsiSI	CCGG	3 cut(s)	590, 832, 890
BslFI	GGGAC	1 cut(s)	862
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	862
BsmI	GAATGC	1 cut(s)	548
BsnI	GGCC	7 cut(s)	200, 242, 274, 437, 503, 593, 899
BsoBI	CYCGRG	1 cut(s)	55
Bsp1286I	GDGCHC	3 cut(s)	62, 82, 135
Bsp143I	GATC	2 cut(s)	721, 772
Bsp19I	CCATGG	1 cut(s)	844
BspACI	CCGC	4 cut(s)	512, 639, 826, 835
BspANI	GGCC	7 cut(s)	200, 242, 274, 437, 503, 593, 899
BspOI	GCTAGC	1 cut(s)	414
BspPI	GGATC	2 cut(s)	716, 780
BsrDI	GCAATG	9 cut(s)	161, 212, 254, 320, 335, 401, 440, 506, 515
BsrFI	RCCGGY	2 cut(s)	589, 889
BsrI	ACTGG	1 cut(s)	125
BssAI	RCCGGY	2 cut(s)	589, 889
BssECI	CCNNGG	6 cut(s)	73, 237, 269, 432, 647, 844
BssMI	GATC	2 cut(s)	721, 772
BssNI	GRCGYC	1 cut(s)	851
BssT1I	CCWWGG	5 cut(s)	73, 237, 432, 647, 844
Bst2UI	CCWGG	1 cut(s)	271
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	1 cut(s)	12
BstACI	GRCGYC	1 cut(s)	851
BstC8I	GCNNGC	4 cut(s)	82, 408, 412, 591
BstDEI	CTNAG	2 cut(s)	195, 807
BstDSI	CCRYGG	1 cut(s)	844
BstF5I	GGATG	4 cut(s)	560, 635, 752, 828
BstKTI	GATC	2 cut(s)	724, 775
BstMBI	GATC	2 cut(s)	721, 772
BstMWI	GCNNNNNNNGC	6 cut(s)	130, 214, 322, 346, 451, 517
BstNI	CCWGG	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	269
BstSLI	GKGCMC	1 cut(s)	135
BstV1I	GCAGC	3 cut(s)	113, 116, 807
Bsu36I	CCTNAGG	1 cut(s)	195
BsuRI	GGCC	7 cut(s)	200, 242, 274, 437, 503, 593, 899
BtgI	CCRYGG	1 cut(s)	844
BtsCI	GGATG	4 cut(s)	560, 635, 752, 828
BtsI	GCAGTG	3 cut(s)	119, 188, 230
BtsIMutI	CAGTG	3 cut(s)	119, 188, 230
Cac8I	GCNNGC	4 cut(s)	82, 408, 412, 591
Cfr10I	RCCGGY	2 cut(s)	589, 889
Cfr13I	GGNCC	1 cut(s)	897
CspAI	ACCGGT	1 cut(s)	889
CviAII	CATG	1 cut(s)	845
DdeI	CTNAG	2 cut(s)	195, 807
DpnI	GATC	2 cut(s)	723, 774
DpnII	GATC	2 cut(s)	721, 772
DrdI	GACNNNNNNGTC	1 cut(s)	856
DseDI	GACNNNNNNGTC	1 cut(s)	856
EaeI	YGGCCR	1 cut(s)	591
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Ecl136II	GAGCTC	1 cut(s)	80
Eco130I	CCWWGG	5 cut(s)	73, 237, 432, 647, 844
Eco147I	AGGCCT	1 cut(s)	437
Eco24I	GRGCYC	1 cut(s)	82
Eco32I	GATATC	1 cut(s)	696
Eco53kI	GAGCTC	1 cut(s)	80
Eco81I	CCTNAGG	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	269
EcoRV	GATATC	1 cut(s)	696
EcoT14I	CCWWGG	5 cut(s)	73, 237, 432, 647, 844
EcoT38I	GRGCYC	1 cut(s)	82
ErhI	CCWWGG	5 cut(s)	73, 237, 432, 647, 844
FaeI	CATG	1 cut(s)	848
FaiI	YATR	5 cut(s)	730, 732, 770, 823, 846
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	862
FatI	CATG	1 cut(s)	844
FauNDI	CATATG	1 cut(s)	730
Fnu4HI	GCNGC	6 cut(s)	102, 105, 512, 796, 826, 836
FokI	GGATG	4 cut(s)	547, 622, 759, 815
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	6 cut(s)	102, 105, 512, 796, 826, 836
FspBI	CTAG	1 cut(s)	411
GluI	GCNGC	6 cut(s)	102, 105, 512, 796, 826, 836
GsaI	CCCAGC	1 cut(s)	931
HaeIII	GGCC	7 cut(s)	200, 242, 274, 437, 503, 593, 899
HapII	CCGG	3 cut(s)	590, 832, 890
Hin1I	GRCGYC	1 cut(s)	851
Hin1II	CATG	1 cut(s)	848
HinfI	GANTC	2 cut(s)	4, 652
HpaII	CCGG	3 cut(s)	590, 832, 890
HphI	GGTGA	1 cut(s)	904
Hpy166II	GTNNAC	1 cut(s)	887
Hpy188I	TCNGA	4 cut(s)	480, 766, 792, 862
Hpy188III	TCNNGA	2 cut(s)	55, 613
Hpy8I	GTNNAC	1 cut(s)	887
Hpy99I	CGWCG	3 cut(s)	856, 859, 862
HpyAV	CCTTC	3 cut(s)	480, 611, 735
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4IV	ACGT	1 cut(s)	851
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	6 cut(s)	130, 214, 322, 346, 451, 517
HpyF3I	CTNAG	2 cut(s)	195, 807
HpySE526I	ACGT	1 cut(s)	851
Hsp92I	GRCGYC	1 cut(s)	851
Hsp92II	CATG	1 cut(s)	848
KroI	GCCGGC	1 cut(s)	589
KroNI	GCCGGC	1 cut(s)	591
Kzo9I	GATC	2 cut(s)	721, 772
LmnI	GCTCC	3 cut(s)	77, 112, 792
Lsp1109I	GCAGC	3 cut(s)	113, 116, 807
LweI	GCATC	1 cut(s)	837
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	1 cut(s)	851
MalI	GATC	2 cut(s)	723, 774
MboI	GATC	2 cut(s)	721, 772
MboII	GAAGA	1 cut(s)	13
MhlI	GDGCHC	3 cut(s)	62, 82, 135
MluCI	AATT	3 cut(s)	138, 642, 814
MmeI	TCCRAC	4 cut(s)	308, 503, 770, 840
MroNI	GCCGGC	1 cut(s)	589
MslI	CAYNNNNRTG	1 cut(s)	65
MspI	CCGG	3 cut(s)	590, 832, 890
MspR9I	CCNGG	1 cut(s)	271
Mva1269I	GAATGC	1 cut(s)	548
MvaI	CCWGG	1 cut(s)	271
MwoI	GCNNNNNNNGC	6 cut(s)	130, 214, 322, 346, 451, 517
NaeI	GCCGGC	1 cut(s)	591
NcoI	CCATGG	1 cut(s)	844
NdeI	CATATG	1 cut(s)	730
NdeII	GATC	2 cut(s)	721, 772
NgoMIV	GCCGGC	1 cut(s)	589
NheI	GCTAGC	1 cut(s)	410
NlaIII	CATG	1 cut(s)	848
PaeR7I	CTCGAG	1 cut(s)	55
PceI	AGGCCT	1 cut(s)	437
PctI	GAATGC	1 cut(s)	548
PdiI	GCCGGC	1 cut(s)	591
PfeI	GAWTC	1 cut(s)	652
PflFI	GACNNNGTC	1 cut(s)	853
PflMI	CCANNNNNTGG	1 cut(s)	91
PinAI	ACCGGT	1 cut(s)	889
PkrI	GCNGC	6 cut(s)	103, 106, 513, 797, 827, 837
Psp124BI	GAGCTC	1 cut(s)	82
Psp6I	CCWGG	1 cut(s)	269
PspFI	CCCAGC	1 cut(s)	927
PspGI	CCWGG	1 cut(s)	269
PspPI	GGNCC	1 cut(s)	897
PsyI	GACNNNGTC	1 cut(s)	853
RseI	CAYNNNNRTG	1 cut(s)	65
SacI	GAGCTC	1 cut(s)	82
SatI	GCNGC	6 cut(s)	102, 105, 512, 796, 826, 836
Sau3AI	GATC	2 cut(s)	721, 772
Sau96I	GGNCC	1 cut(s)	897
ScrFI	CCNGG	1 cut(s)	271
SduI	GDGCHC	3 cut(s)	62, 82, 135
SfaNI	GCATC	1 cut(s)	837
Sfr274I	CTCGAG	1 cut(s)	55
SgrAI	CRCCGGYG	1 cut(s)	889
SlaI	CTCGAG	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
Sse9I	AATT	3 cut(s)	138, 642, 814
SseBI	AGGCCT	1 cut(s)	437
SsiI	CCGC	4 cut(s)	512, 639, 826, 835
SspMI	CTAG	1 cut(s)	411
SstI	GAGCTC	1 cut(s)	82
StuI	AGGCCT	1 cut(s)	437
StyD4I	CCNGG	1 cut(s)	269
StyI	CCWWGG	5 cut(s)	73, 237, 432, 647, 844
TaaI	ACNGT	1 cut(s)	298
TaiI	ACGT	1 cut(s)	854
TaqI	TCGA	2 cut(s)	56, 221
TasI	AATT	3 cut(s)	138, 642, 814
TauI	GCSGC	3 cut(s)	514, 828, 838
TfiI	GAWTC	1 cut(s)	652
TscAI	CASTG	3 cut(s)	126, 195, 237
TseI	GCWGC	3 cut(s)	101, 104, 795
TspDTI	ATGAA	1 cut(s)	717
TspGWI	ACGGA	2 cut(s)	573, 645
TspRI	CASTG	3 cut(s)	126, 195, 237
Tth111I	GACNNNGTC	1 cut(s)	853
Van91I	CCANNNNNTGG	1 cut(s)	91
XapI	RAATTY	1 cut(s)	814
XhoI	CTCGAG	1 cut(s)	55
XspI	CTAG	1 cut(s)	411
ZraI	GACGTC	1 cut(s)	852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.