Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012659

Physical Location & Seq

Genomic Coordinates Forward (+)

23033140 .. 23033892

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48499

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGAGATTTGCCTTGGCAGCTCCTTTAAACTCAAACATGACTTCTTCTAAGCTTTTCTTCGTTCTGTCTCTGGCCATGATGTTGCTACTGTCAAGTACCCATAAGAGCCAAGCAGCTCGCCACCTCTTGGACACAGCAGCGGCTCCTCCACCAGCATTGCCAGTAGTGCCCACAATTCCCTCTCTACCCAAGACTGCATTGCCTCCATTACCCTCGGCACCGACACTGCCCAAGGCCACCCTGCCCCCGTTGCCCTCGGTACCAACACTGCCCAAAGCCACATTGCCACCATTGCCCTCAAACCCCTTGCCTACACTTCCAACTACCCCAACTCTTCCAAAAGCCACCTTGCCACCATTGCCATCCACCCCGTTGCCTACACCGCCTACCACCCCACCTGTAATCCCATCTTTGCCAAAATCAGCATTCCCTACTGTGCCGACAACCCCCTTGCCCACGACACTACCTCCATTGCAATCCAGCTCACTACCAACACTGCCCAAGGCCACATTGCCACCTCTGCCCTCAAACCCTTTGCCTTCATTTCCAACTGCCCTGACTCTGCCAAAGGCCACATTGCCGCCATTGCCATCAATCCCATCGTTGCCGAAATCAGCAGTGCCTACAACACCCTTGCCAACTACTCTACCTCCATTGCCAGCCAACTCAGTGCCCACACTCCCAACAACAATCCCCACTATTCCATCAGCAATTCCATCTATTCCGTTCCTCTCTCCACCCCCATCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

25.57

Weight (kDa)

11.39

Isoelectric Point (pI)

74.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012659)

Species	Orthologous Gene IDs
malus_domestica	MD03G1126700.v1.1
prunus_persica	Prupe.6G111400_v2.0.a1 Prupe.6G197700_v2.0.a1 Prupe.6G197800_v2.0.a1 Prupe.6G197900_v2.0.a1 Prupe.6G198000_v2.0.a1 Prupe.6G198100_v2.0.a1
pyrus_communis	pycom15g27790
rosa_chinensis	RchiOBHm_Chr2g0111391 RchiOBHm_Chr2g0111401
rosa_roxburghii	Rroxscaffold_2G00132410 Rroxscaffold_2G00132420
rosa_samantha	Rh2AG226600 Rh2BG238300 Rh2BG238400 Rh2CG229700 Rh2DG234000
rosa_wichuraiana	Rw2G017480 Rw2G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	259
AccB1I	GGYRCC	2 cut(s)	217, 259
AccB7I	CCANNNNNTGG	1 cut(s)	127
AciI	CCGC	3 cut(s)	140, 383, 581
AcoI	YGGCCR	1 cut(s)	72
AfaI	GTAC	2 cut(s)	97, 261
AfiI	CCNNNNNNNGG	1 cut(s)	127
AluBI	AGCT	4 cut(s)	20, 52, 116, 483
AluI	AGCT	4 cut(s)	20, 52, 116, 483
Alw26I	GTCTC	1 cut(s)	72
AoxI	GGCC	4 cut(s)	72, 234, 504, 570
ApeKI	GCWGC	3 cut(s)	17, 113, 137
Asp718I	GGTACC	1 cut(s)	259
BaeGI	GKGCMC	2 cut(s)	171, 675
BalI	TGGCCA	1 cut(s)	74
BanI	GGYRCC	2 cut(s)	217, 259
BbvI	GCAGC	3 cut(s)	29, 125, 149
BccI	CCATC	7 cut(s)	370, 415, 598, 607, 712, 724, 751
BcoDI	GTCTC	1 cut(s)	72
BisI	GCNGC	5 cut(s)	18, 114, 138, 141, 581
BlsI	GCNGC	5 cut(s)	19, 115, 139, 142, 582
BmiI	GGNNCC	3 cut(s)	144, 219, 261
BsaJI	CCNNGG	5 cut(s)	12, 213, 231, 255, 501
BsaXI	ACNNNNNCTCC	4 cut(s)	451, 481, 634, 664
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	161
BseDI	CCNNGG	5 cut(s)	12, 213, 231, 255, 501
BseGI	GGATG	1 cut(s)	362
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	681
BseNI	ACTGG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	135
BseSI	GKGCMC	2 cut(s)	171, 675
BseXI	GCAGC	3 cut(s)	29, 125, 149
BshFI	GGCC	4 cut(s)	74, 236, 506, 572
BshNI	GGYRCC	2 cut(s)	217, 259
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	72
BsmI	GAATGC	1 cut(s)	425
BsnI	GGCC	4 cut(s)	74, 236, 506, 572
Bsp1286I	GDGCHC	2 cut(s)	171, 675
BspACI	CCGC	3 cut(s)	140, 383, 581
BspANI	GGCC	4 cut(s)	74, 236, 506, 572
BspCNI	CTCAG	1 cut(s)	680
BspLI	GGNNCC	3 cut(s)	144, 219, 261
BspT107I	GGYRCC	2 cut(s)	217, 259
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	5 cut(s)	12, 213, 231, 255, 501
BssT1I	CCWWGG	3 cut(s)	12, 231, 501
Bst4CI	ACNGT	2 cut(s)	90, 436
Bst6I	CTCTTC	1 cut(s)	339
BstC8I	GCNNGC	2 cut(s)	118, 660
BstDEI	CTNAG	2 cut(s)	48, 667
BstF5I	GGATG	1 cut(s)	362
BstMAI	GTCTC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	8 cut(s)	17, 166, 250, 292, 358, 382, 520, 586
BstSLI	GKGCMC	2 cut(s)	171, 675
BstV1I	GCAGC	3 cut(s)	29, 125, 149
BsuRI	GGCC	4 cut(s)	74, 236, 506, 572
BtsCI	GGATG	1 cut(s)	362
BtsI	GCAGTG	4 cut(s)	224, 266, 494, 624
BtsIMutI	CAGTG	5 cut(s)	224, 266, 494, 624, 675
Cac8I	GCNNGC	2 cut(s)	118, 660
Csp6I	GTAC	2 cut(s)	96, 260
CspCI	CAANNNNNGTGG	2 cut(s)	138, 173
CviAII	CATG	2 cut(s)	37, 76
CviQI	GTAC	2 cut(s)	96, 260
DdeI	CTNAG	2 cut(s)	48, 667
DraI	TTTAAA	1 cut(s)	27
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco130I	CCWWGG	3 cut(s)	12, 231, 501
EcoT14I	CCWWGG	3 cut(s)	12, 231, 501
ErhI	CCWWGG	3 cut(s)	12, 231, 501
FaeI	CATG	2 cut(s)	40, 79
FaiI	YATR	3 cut(s)	38, 77, 102
FalI	AAGNNNNNCTT	2 cut(s)	41, 73
FatI	CATG	2 cut(s)	36, 75
Fnu4HI	GCNGC	5 cut(s)	18, 114, 138, 141, 581
FokI	GGATG	1 cut(s)	349
Fsp4HI	GCNGC	5 cut(s)	18, 114, 138, 141, 581
GluI	GCNGC	5 cut(s)	18, 114, 138, 141, 581
HaeIII	GGCC	4 cut(s)	74, 236, 506, 572
Hin1II	CATG	2 cut(s)	40, 79
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	1 cut(s)	559
HpyAV	CCTTC	1 cut(s)	549
HpyCH4III	ACNGT	2 cut(s)	90, 436
HpyCH4V	TGCA	2 cut(s)	197, 475
HpyF10VI	GCNNNNNNNGC	8 cut(s)	17, 166, 250, 292, 358, 382, 520, 586
HpyF3I	CTNAG	2 cut(s)	48, 667
Hsp92II	CATG	2 cut(s)	40, 79
KpnI	GGTACC	1 cut(s)	263
LmnI	GCTCC	2 cut(s)	25, 148
LpnPI	CCDG	8 cut(s)	56, 165, 174, 254, 411, 493, 569, 672
Lsp1109I	GCAGC	3 cut(s)	29, 125, 149
MboII	GAAGA	3 cut(s)	36, 49, 326
MhlI	GDGCHC	2 cut(s)	171, 675
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	2 cut(s)	174, 711
MluNI	TGGCCA	1 cut(s)	74
MlyI	GAGTC	1 cut(s)	553
MmeI	TCCRAC	2 cut(s)	344, 572
Mox20I	TGGCCA	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	1 cut(s)	26
Msp20I	TGGCCA	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	140
Mva1269I	GAATGC	1 cut(s)	425
MwoI	GCNNNNNNNGC	8 cut(s)	17, 166, 250, 292, 358, 382, 520, 586
NlaIII	CATG	2 cut(s)	40, 79
NlaIV	GGNNCC	3 cut(s)	144, 219, 261
NmeAIII	GCCGAG	1 cut(s)	194
PctI	GAATGC	1 cut(s)	425
PflMI	CCANNNNNTGG	1 cut(s)	127
PkrI	GCNGC	5 cut(s)	19, 115, 139, 142, 582
PleI	GAGTC	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	553
PspN4I	GGNNCC	3 cut(s)	144, 219, 261
RsaI	GTAC	2 cut(s)	97, 261
RsaNI	GTAC	2 cut(s)	96, 260
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	5 cut(s)	18, 114, 138, 141, 581
SchI	GAGTC	1 cut(s)	553
SduI	GDGCHC	2 cut(s)	171, 675
Sse9I	AATT	2 cut(s)	174, 711
SsiI	CCGC	3 cut(s)	140, 383, 581
StyI	CCWWGG	3 cut(s)	12, 231, 501
TaaI	ACNGT	2 cut(s)	90, 436
TasI	AATT	2 cut(s)	174, 711
TauI	GCSGC	2 cut(s)	143, 583
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TscAI	CASTG	5 cut(s)	231, 273, 501, 624, 675
TseI	GCWGC	3 cut(s)	17, 113, 137
TspDTI	ATGAA	1 cut(s)	531
TspGWI	ACGGA	1 cut(s)	714
TspRI	CASTG	5 cut(s)	231, 273, 501, 624, 675
Van91I	CCANNNNNTGG	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.