Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0012659

Physical Location & Seq

Genomic Coordinates Forward (+)

21605220 .. 21605972

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G017490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGAGATTTGCCTTGGCAGCTCCTCTAAACTCAAACATGACTTCTTCTAAGCTTTTCTTCGTTCTGTCTTTGGCCATGATGTTGTTACTCTCAAGTACCCATATGAGTCAAGCAGCTCGTCACCTCTTGGACACAGCAGCAGCTCCTCCACCAGCATTGCCAGTAGCACCCACAATTCCCTCTCTACCCAAGACTGCATTGCCTCCACTACCCTCGGCACCAACACTGCCTAAGGCCACCCTGGCCCCATTGCCTTCGGTAGCAACACTGCCCAAAGCCACATTGCCACCATTGCCCTCAAACCCCTTGCCTACACTTCCAACTACCCCAACTCTTCCAAAAGCCACCTTGCCACCATTGCCATCTACCCCATTGCCTACACCGCCTATCACCCCACCTGTAATCCCATCTTTGCCAAAATCAGCATTGCCTACTGTGCCGACAACCCCCTTGCCCGCGACACTACCTCCATTGCCAGCCAGCTCACTACCAACACTGCCCAAGGCCACATTGCCACCTCTGCCCTCAAACCCTTTGCCTTCACTTCCAACTGCCCCATCTCTGCCAAAGGCCACATTGCCGCCATTGCCATCAATCCCATCGTTGCCGAAATCAGCATTGCCTACAACACCCTTGCCAACTACTCTGCCTCCATTGCCAGCCAACTCACTGCCCACACTCCCAACAACAATCCCCACTATTCCATCAGCAATTCCATCCATTCCGTTCCTCTCTCCACCCCCATCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

25.36

Weight (kDa)

11.36

Isoelectric Point (pI)

74.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012659)

Species	Orthologous Gene IDs
malus_domestica	MD03G1126700.v1.1
prunus_persica	Prupe.6G111400_v2.0.a1 Prupe.6G197700_v2.0.a1 Prupe.6G197800_v2.0.a1 Prupe.6G197900_v2.0.a1 Prupe.6G198000_v2.0.a1 Prupe.6G198100_v2.0.a1
pyrus_communis	pycom15g27790
rosa_chinensis	RchiOBHm_Chr2g0111391 RchiOBHm_Chr2g0111401
rosa_roxburghii	Rroxscaffold_2G00132410 Rroxscaffold_2G00132420
rosa_samantha	Rh2AG226600 Rh2BG238300 Rh2BG238400 Rh2CG229700 Rh2DG234000
rosa_wichuraiana	Rw2G017480 Rw2G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	217
AccII	CGCG	1 cut(s)	458
AciI	CCGC	3 cut(s)	383, 456, 581
AcoI	YGGCCR	1 cut(s)	72
AfaI	GTAC	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	5 cut(s)	20, 52, 116, 143, 483
AluI	AGCT	5 cut(s)	20, 52, 116, 143, 483
AoxI	GGCC	5 cut(s)	72, 234, 243, 504, 570
ApeKI	GCWGC	4 cut(s)	17, 113, 137, 140
AspS9I	GGNCC	1 cut(s)	244
AsuHPI	GGTGA	2 cut(s)	113, 382
AxyI	CCTNAGG	1 cut(s)	231
BalI	TGGCCA	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	217
BbvI	GCAGC	4 cut(s)	29, 125, 149, 152
BccI	CCATC	8 cut(s)	370, 415, 565, 598, 607, 712, 724, 751
BciT130I	CCWGG	1 cut(s)	242
BglI	GCCNNNNNGGC	1 cut(s)	242
BisI	GCNGC	5 cut(s)	18, 114, 138, 141, 581
BlsI	GCNGC	5 cut(s)	19, 115, 139, 142, 582
Bme1390I	CCNGG	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	2 cut(s)	219, 246
BmrFI	CCNGG	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	76
BsaJI	CCNNGG	4 cut(s)	12, 213, 240, 501
BsaXI	ACNNNNNCTCC	4 cut(s)	451, 481, 634, 664
Bse1I	ACTGG	1 cut(s)	161
Bse21I	CCTNAGG	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	4 cut(s)	12, 213, 240, 501
BseGI	GGATG	1 cut(s)	716
BseNI	ACTGG	1 cut(s)	161
BseRI	GAGGAG	2 cut(s)	12, 135
BseXI	GCAGC	4 cut(s)	29, 125, 149, 152
Bsh1236I	CGCG	1 cut(s)	458
BshFI	GGCC	5 cut(s)	74, 236, 245, 506, 572
BshNI	GGYRCC	1 cut(s)	217
BsnI	GGCC	5 cut(s)	74, 236, 245, 506, 572
BspACI	CCGC	3 cut(s)	383, 456, 581
BspANI	GGCC	5 cut(s)	74, 236, 245, 506, 572
BspFNI	CGCG	1 cut(s)	458
BspLI	GGNNCC	2 cut(s)	219, 246
BspT107I	GGYRCC	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	4 cut(s)	12, 213, 240, 501
BssT1I	CCWWGG	2 cut(s)	12, 501
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	436
Bst6I	CTCTTC	1 cut(s)	339
BstC8I	GCNNGC	4 cut(s)	456, 477, 481, 660
BstDEI	CTNAG	2 cut(s)	48, 231
BstF5I	GGATG	1 cut(s)	716
BstFNI	CGCG	1 cut(s)	458
BstMWI	GCNNNNNNNGC	9 cut(s)	17, 242, 292, 358, 382, 436, 520, 586, 655
BstNI	CCWGG	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	240
BstUI	CGCG	1 cut(s)	458
BstV1I	GCAGC	4 cut(s)	29, 125, 149, 152
Bsu36I	CCTNAGG	1 cut(s)	231
BsuRI	GGCC	5 cut(s)	74, 236, 245, 506, 572
BtsCI	GGATG	1 cut(s)	716
BtsI	GCAGTG	4 cut(s)	224, 266, 494, 668
BtsIMutI	CAGTG	4 cut(s)	224, 266, 494, 668
Cac8I	GCNNGC	4 cut(s)	456, 477, 481, 660
Cfr13I	GGNCC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	96
CspCI	CAANNNNNGTGG	2 cut(s)	138, 173
CviAII	CATG	2 cut(s)	37, 76
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	2 cut(s)	48, 231
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco130I	CCWWGG	2 cut(s)	12, 501
Eco81I	CCTNAGG	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	240
EcoT14I	CCWWGG	2 cut(s)	12, 501
ErhI	CCWWGG	2 cut(s)	12, 501
FaeI	CATG	2 cut(s)	40, 79
FaiI	YATR	4 cut(s)	38, 77, 102, 104
FalI	AAGNNNNNCTT	2 cut(s)	41, 73
FatI	CATG	2 cut(s)	36, 75
FauI	CCCGC	1 cut(s)	463
FauNDI	CATATG	1 cut(s)	102
Fnu4HI	GCNGC	5 cut(s)	18, 114, 138, 141, 581
FokI	GGATG	1 cut(s)	703
Fsp4HI	GCNGC	5 cut(s)	18, 114, 138, 141, 581
GluI	GCNGC	5 cut(s)	18, 114, 138, 141, 581
HaeIII	GGCC	5 cut(s)	74, 236, 245, 506, 572
Hin1II	CATG	2 cut(s)	40, 79
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	1 cut(s)	106
HphI	GGTGA	2 cut(s)	113, 382
HpyAV	CCTTC	2 cut(s)	264, 549
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4V	TGCA	1 cut(s)	197
HpyF10VI	GCNNNNNNNGC	9 cut(s)	17, 242, 292, 358, 382, 436, 520, 586, 655
HpyF3I	CTNAG	2 cut(s)	48, 231
Hsp92II	CATG	2 cut(s)	40, 79
LmnI	GCTCC	2 cut(s)	25, 148
LpnPI	CCDG	8 cut(s)	165, 174, 227, 254, 411, 489, 493, 672
Lsp1109I	GCAGC	4 cut(s)	29, 125, 149, 152
MaeIII	GTNAC	2 cut(s)	84, 119
MboII	GAAGA	3 cut(s)	36, 49, 326
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	2 cut(s)	174, 711
MluNI	TGGCCA	1 cut(s)	74
MlyI	GAGTC	1 cut(s)	115
MmeI	TCCRAC	2 cut(s)	344, 572
Mox20I	TGGCCA	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	74
Msp20I	TGGCCA	1 cut(s)	74
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
MvnI	CGCG	1 cut(s)	458
MwoI	GCNNNNNNNGC	9 cut(s)	17, 242, 292, 358, 382, 436, 520, 586, 655
NdeI	CATATG	1 cut(s)	102
NlaIII	CATG	2 cut(s)	40, 79
NlaIV	GGNNCC	2 cut(s)	219, 246
NmeAIII	GCCGAG	1 cut(s)	194
NmuCI	GTSAC	1 cut(s)	119
PkrI	GCNGC	5 cut(s)	19, 115, 139, 142, 582
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	219, 246
PspPI	GGNCC	1 cut(s)	244
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
SatI	GCNGC	5 cut(s)	18, 114, 138, 141, 581
Sau96I	GGNCC	1 cut(s)	244
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	242
SfiI	GGCCNNNNNGGCC	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	91
SmoI	CTYRAG	1 cut(s)	91
Sse9I	AATT	2 cut(s)	174, 711
SsiI	CCGC	3 cut(s)	383, 456, 581
StyD4I	CCNGG	1 cut(s)	240
StyI	CCWWGG	2 cut(s)	12, 501
TaaI	ACNGT	1 cut(s)	436
TasI	AATT	2 cut(s)	174, 711
TauI	GCSGC	1 cut(s)	583
TscAI	CASTG	4 cut(s)	231, 273, 501, 675
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	4 cut(s)	17, 113, 137, 140
Tsp45I	GTSAC	1 cut(s)	119
TspGWI	ACGGA	1 cut(s)	714
TspRI	CASTG	4 cut(s)	231, 273, 501, 675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.