Prupe.6G198100_v2.0.a1

RNA-binding protein 12-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
20499803 .. 20500189
387 bp
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UTR
Exon/CDS
Intron
Prupe.6G198100.1

Sequence Viewer

Length: 387 bp
ATGGCTTTTCCCAAGCTTTGCTTCATTTTTTCTTTCATGGTGGTATTGGCAGTCTCGAGCACCCAAATGAGCCAAGCAGCTCGCCAACTTTTGGACACACCAGCAAAACCGCCACCACTGGCAATCCCTACAATCCCATCTCTGCCAAACCTCACACTGCCCCCGTTGCCCTCGCTACCGACACTGCCCTCGAACCCCTCCTTGCCTACACTTCCCACTGCCCCAACTCTGCCAAAGCCCACATTGCCTACCTTGCCCACAACACTACCTCCATTGCCAGCCAACCCACAATTGCCCACACTCCCAACATTCCCTAAAGTCCCCACCATTAACATTCCTTCTACAATTCCAACAATTCCCTTCTTCTCCCCACCCCCGTCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

13.52

Weight (kDa)

10.19

Isoelectric Point (pI)

71.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 91
AciI CCGC 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 91
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 2 cut(s) 16, 80
AluI AGCT 2 cut(s) 16, 80
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 77
AvaI CYCGRG 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 89
BccI CCATC 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 58
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
BmeT110I CYCGRG 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 253, 283
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 123
Bse3DI GCAATG 2 cut(s) 242, 272
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMI GCAATG 2 cut(s) 242, 272
BseNI ACTGG 1 cut(s) 123
BseXI GCAGC 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 62
BsiHKCI CYCGRG 1 cut(s) 55
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 305
BsoBI CYCGRG 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 62
BspACI CCGC 1 cut(s) 110
BsrDI GCAATG 2 cut(s) 242, 272
BsrI ACTGG 1 cut(s) 123
BstC8I GCNNGC 2 cut(s) 82, 279
BstMAI GTCTC 1 cut(s) 58
BstMWI GCNNNNNNNGC 3 cut(s) 166, 244, 253
BstV1I GCAGC 1 cut(s) 89
BtsI GCAGTG 3 cut(s) 155, 182, 216
BtsIMutI CAGTG 4 cut(s) 116, 155, 182, 216
Cac8I GCNNGC 2 cut(s) 82, 279
CviAII CATG 1 cut(s) 37
CviJI RGCY 6 cut(s) 5, 16, 72, 80, 238, 281
CviKI_1 RGCY 6 cut(s) 5, 16, 72, 80, 238, 281
Eco88I CYCGRG 1 cut(s) 55
FaeI CATG 1 cut(s) 40
FaiI YATR 1 cut(s) 38
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 1 cut(s) 305
FatI CATG 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 78
Hin1II CATG 1 cut(s) 40
HindIII AAGCTT 1 cut(s) 14
Hpy188III TCNNGA 1 cut(s) 55
HpyAV CCTTC 2 cut(s) 348, 370
HpyF10VI GCNNNNNNNGC 3 cut(s) 166, 244, 253
Hsp92II CATG 1 cut(s) 40
LpnPI CCDG 3 cut(s) 104, 114, 291
Lsp1109I GCAGC 1 cut(s) 89
MboII GAAGA 1 cut(s) 355
MfeI CAATTG 1 cut(s) 290
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 3 cut(s) 290, 345, 354
MmeI TCCRAC 1 cut(s) 374
MnlI CCTC 5 cut(s) 161, 181, 199, 208, 279
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 1 cut(s) 65
MunI CAATTG 1 cut(s) 290
MwoI GCNNNNNNNGC 3 cut(s) 166, 244, 253
NlaIII CATG 1 cut(s) 40
PaeR7I CTCGAG 1 cut(s) 55
PflMI CCANNNNNTGG 1 cut(s) 91
PkrI GCNGC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 65
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 1 cut(s) 78
SduI GDGCHC 1 cut(s) 62
SetI ASST 5 cut(s) 18, 82, 153, 254, 271
Sfr274I CTCGAG 1 cut(s) 55
SlaI CTCGAG 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
Sse9I AATT 3 cut(s) 290, 345, 354
SsiI CCGC 1 cut(s) 110
TaqI TCGA 2 cut(s) 56, 191
TasI AATT 3 cut(s) 290, 345, 354
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 4 cut(s) 123, 162, 189, 223
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 2 cut(s) 13, 25
TspRI CASTG 4 cut(s) 123, 162, 189, 223
Van91I CCANNNNNTGG 1 cut(s) 91
XhoI CTCGAG 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.