Prupe.6G197900_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
20491196 .. 20491759
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G197900.1

Sequence Viewer

Length: 564 bp
ATGGCTTTTCCCAAGATTTTCTTCATTTCGTCCTTGCTGGTGGTGATTTTGTCAGCCTCAAGCACCCAAATGAGCCATGCAGCTCGCCACCTTTTGGACACACCAGCAGCAGCTCCACCCCCAACACTGGCAATCCCAACAATCCCCTCTCTGCCAAATCCCACTCAGCTGCCTCCCTTGCCTTCACTACCAACACTTCCCAAGCCCTCAAACACCTTGCCTACACTTCCAACTGCCCCAACTCTGCCCAAGACCACATTGCCTCCACTTCCCTCAACCCCATTGCCTACGCTTCCAACTGCTCCAACTTTGCCAAAGCCGGCCACGTTGCCACCGTTGCCCTCTACCCAATTGCCAACTCTCCCAACTACTCTGCCCCCATTCCCAACCTCCCTACCCCAAATCCCATCTTTGCCAAAATCCACATTGCCTACGGTGCCCACAACCCTCCCTCCATTGCCCGCCAACCCACTTCCCTCATTCCCCTCAACAATCCCTTCAATCCCCACCATTCCAACAACAATTCCATCGACTCCATTCTTCACCCCACCCCCATCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

19.37

Weight (kDa)

10.58

Isoelectric Point (pI)

70.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 436
AccB7I CCANNNNNTGG 1 cut(s) 94
AciI CCGC 1 cut(s) 462
AcoI YGGCCR 1 cut(s) 321
AfiI CCNNNNNNNGG 2 cut(s) 94, 127
AgsI TTSAA 1 cut(s) 501
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 3 cut(s) 83, 113, 169
AluI AGCT 3 cut(s) 83, 113, 169
AoxI GGCC 1 cut(s) 321
ApeKI GCWGC 4 cut(s) 80, 107, 110, 169
AsuHPI GGTGA 2 cut(s) 55, 535
BaeGI GKGCMC 1 cut(s) 441
BanI GGYRCC 1 cut(s) 436
BbvI GCAGC 4 cut(s) 92, 119, 122, 156
BccI CCATC 3 cut(s) 415, 535, 562
BisI GCNGC 4 cut(s) 81, 108, 111, 170
BlsI GCNGC 4 cut(s) 82, 109, 112, 171
BmiI GGNNCC 1 cut(s) 438
BpuEI CTTGAG 1 cut(s) 43
BsaXI ACNNNNNCTCC 4 cut(s) 247, 277, 436, 466
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 127
Bse118I RCCGGY 1 cut(s) 319
Bse1I ACTGG 1 cut(s) 132
Bse3DI GCAATG 4 cut(s) 257, 281, 425, 455
BseGI GGATG 1 cut(s) 554
BseLI CCNNNNNNNGG 2 cut(s) 94, 127
BseMI GCAATG 4 cut(s) 257, 281, 425, 455
BseMII CTCAG 1 cut(s) 179
BseNI ACTGG 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 441
BseXI GCAGC 4 cut(s) 92, 119, 122, 156
BshFI GGCC 1 cut(s) 323
BshNI GGYRCC 1 cut(s) 436
BsiSI CCGG 1 cut(s) 320
BslI CCNNNNNNNGG 2 cut(s) 94, 127
BsnI GGCC 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 441
BspACI CCGC 1 cut(s) 462
BspANI GGCC 1 cut(s) 323
BspCNI CTCAG 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 438
BspT107I GGYRCC 1 cut(s) 436
BsrDI GCAATG 4 cut(s) 257, 281, 425, 455
BsrFI RCCGGY 1 cut(s) 319
BsrI ACTGG 1 cut(s) 132
BssAI RCCGGY 1 cut(s) 319
Bst4CI ACNGT 2 cut(s) 336, 436
BstC8I GCNNGC 3 cut(s) 85, 321, 462
BstDEI CTNAG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 554
BstMWI GCNNNNNNNGC 3 cut(s) 178, 337, 436
BstSLI GKGCMC 1 cut(s) 441
BstV1I GCAGC 4 cut(s) 92, 119, 122, 156
BsuRI GGCC 1 cut(s) 323
BtsCI GGATG 1 cut(s) 554
BtsIMutI CAGTG 1 cut(s) 125
Cac8I GCNNGC 3 cut(s) 85, 321, 462
Cfr10I RCCGGY 1 cut(s) 319
CviAII CATG 1 cut(s) 77
CviJI RGCY 9 cut(s) 5, 56, 75, 83, 113, 169, 205, 319, 323
CviKI_1 RGCY 9 cut(s) 5, 56, 75, 83, 113, 169, 205, 319, 323
DdeI CTNAG 1 cut(s) 165
EaeI YGGCCR 1 cut(s) 321
FaeI CATG 1 cut(s) 80
FaiI YATR 1 cut(s) 78
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 1 cut(s) 76
FauI CCCGC 1 cut(s) 469
Fnu4HI GCNGC 4 cut(s) 81, 108, 111, 170
FokI GGATG 1 cut(s) 541
Fsp4HI GCNGC 4 cut(s) 81, 108, 111, 170
GluI GCNGC 4 cut(s) 81, 108, 111, 170
HaeIII GGCC 1 cut(s) 323
HapII CCGG 1 cut(s) 320
Hin1II CATG 1 cut(s) 80
HinfI GANTC 1 cut(s) 532
HpaII CCGG 1 cut(s) 320
HphI GGTGA 2 cut(s) 55, 535
HpyAV CCTTC 2 cut(s) 192, 507
HpyCH4III ACNGT 2 cut(s) 336, 436
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 3 cut(s) 178, 337, 436
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 1 cut(s) 326
Hsp92II CATG 1 cut(s) 80
KroI GCCGGC 1 cut(s) 319
KroNI GCCGGC 1 cut(s) 321
LmnI GCTCC 2 cut(s) 118, 307
LpnPI CCDG 4 cut(s) 23, 113, 117, 333
Lsp1109I GCAGC 4 cut(s) 92, 119, 122, 156
MaeII ACGT 1 cut(s) 326
MboII GAAGA 2 cut(s) 13, 532
MfeI CAATTG 1 cut(s) 350
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 3 cut(s) 350, 522, 559
MlyI GAGTC 1 cut(s) 526
MmeI TCCRAC 4 cut(s) 254, 320, 329, 539
MroNI GCCGGC 1 cut(s) 319
MseI TTAA 1 cut(s) 562
MslI CAYNNNNRTG 1 cut(s) 68
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 1 cut(s) 320
MunI CAATTG 1 cut(s) 350
MwoI GCNNNNNNNGC 3 cut(s) 178, 337, 436
NaeI GCCGGC 1 cut(s) 321
NgoMIV GCCGGC 1 cut(s) 319
NlaIII CATG 1 cut(s) 80
NlaIV GGNNCC 1 cut(s) 438
PcsI WCGNNNNNNNCGW 1 cut(s) 332
PdiI GCCGGC 1 cut(s) 321
PflMI CCANNNNNTGG 1 cut(s) 94
PkrI GCNGC 4 cut(s) 82, 109, 112, 171
PleI GAGTC 1 cut(s) 526
PpsI GAGTC 1 cut(s) 526
PspN4I GGNNCC 1 cut(s) 438
PvuII CAGCTG 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 68
SaqAI TTAA 1 cut(s) 562
SatI GCNGC 4 cut(s) 81, 108, 111, 170
SchI GAGTC 1 cut(s) 526
SduI GDGCHC 1 cut(s) 441
SetI ASST 7 cut(s) 85, 93, 115, 171, 218, 329, 392
SmiMI CAYNNNNRTG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 3 cut(s) 350, 522, 559
SsiI CCGC 1 cut(s) 462
TaaI ACNGT 2 cut(s) 336, 436
TaiI ACGT 1 cut(s) 329
TaqI TCGA 1 cut(s) 530
TasI AATT 3 cut(s) 350, 522, 559
Tru1I TTAA 1 cut(s) 562
Tru9I TTAA 1 cut(s) 562
TscAI CASTG 1 cut(s) 132
TseI GCWGC 4 cut(s) 80, 107, 110, 169
TspDTI ATGAA 1 cut(s) 13
TspRI CASTG 1 cut(s) 132
Van91I CCANNNNNTGG 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.