pycom15g27790

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
23297551 .. 23298036
486 bp
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UTR
Exon/CDS
Intron
pycom15g27790.1

Sequence Viewer

Length: 486 bp
ATGGCTACTCCCAAACTTTTCTTCACTTTGTCTTTGGTGGCGGTGCTGTCACTCTCAAGCATCCACATGAGCCACCAAGCTGCTCGCCACCTTTTGGACACACCAGCAGCGGCTTCTCCCCCAGCATTGGCGGTGCCTACAATTCCTTCTCTGCCCAAAACTACATTGCCTCCACTGCCCTCACTACCAACAATGCCTAAAGCCACTTTGCCACCCCTGCCCTCAACCCCGTTGCCTACTCTACCAACTGTCCCAACTCTTCCAAAGGCCACTTTGCCACCATTGCCTTCCACTCAACTGCCAACTCCATTCCCAACCTCCCAAACCCCATCTTTGCCAAAACCAGCATTGCCTACTATGCCCACAACTCTACCTCCATTGCCAGCCAACCCACTTCCCAAATTCCCAACAACAATCCCTTCAATTCCCACCATTCCATCAACAATTCCAGCCATCCCATTCCTCTCCCCACCCCCGTCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

16.66

Weight (kDa)

10.68

Isoelectric Point (pI)

76.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 133
AccB7I CCANNNNNTGG 1 cut(s) 94
AciI CCGC 3 cut(s) 41, 110, 131
AcsI RAATTY 1 cut(s) 401
AfiI CCNNNNNNNGG 2 cut(s) 94, 127
AgsI TTSAA 1 cut(s) 423
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
AoxI GGCC 1 cut(s) 267
ApeKI GCWGC 2 cut(s) 80, 107
ApoI RAATTY 1 cut(s) 401
BanI GGYRCC 1 cut(s) 133
BbvI GCAGC 2 cut(s) 67, 119
BccI CCATC 3 cut(s) 337, 445, 461
BisI GCNGC 3 cut(s) 81, 108, 111
BlsI GCNGC 3 cut(s) 82, 109, 112
BmiI GGNNCC 1 cut(s) 135
BmsI GCATC 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 40
BsaXI ACNNNNNCTCC 4 cut(s) 154, 184, 358, 388
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 127
Bse3DI GCAATG 4 cut(s) 164, 281, 347, 377
BseGI GGATG 2 cut(s) 60, 453
BseLI CCNNNNNNNGG 2 cut(s) 94, 127
BseMI GCAATG 4 cut(s) 164, 281, 347, 377
BseXI GCAGC 2 cut(s) 67, 119
BseYI CCCAGC 1 cut(s) 121
BshFI GGCC 1 cut(s) 269
BshNI GGYRCC 1 cut(s) 133
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 2 cut(s) 94, 127
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 1 cut(s) 269
BspACI CCGC 3 cut(s) 41, 110, 131
BspANI GGCC 1 cut(s) 269
BspLI GGNNCC 1 cut(s) 135
BspT107I GGYRCC 1 cut(s) 133
BsrDI GCAATG 4 cut(s) 164, 281, 347, 377
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 264
BstC8I GCNNGC 2 cut(s) 85, 384
BstF5I GGATG 2 cut(s) 60, 453
BstMWI GCNNNNNNNGC 4 cut(s) 175, 217, 283, 358
BstV1I GCAGC 2 cut(s) 67, 119
BsuRI GGCC 1 cut(s) 269
BtsCI GGATG 2 cut(s) 60, 453
BtsI GCAGTG 1 cut(s) 173
BtsIMutI CAGTG 1 cut(s) 173
Cac8I GCNNGC 2 cut(s) 85, 384
CviAII CATG 1 cut(s) 67
CviJI RGCY 8 cut(s) 5, 72, 80, 113, 203, 269, 386, 452
CviKI_1 RGCY 8 cut(s) 5, 72, 80, 113, 203, 269, 386, 452
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
FaeI CATG 1 cut(s) 70
FaiI YATR 2 cut(s) 68, 359
FaqI GGGAC 1 cut(s) 236
FatI CATG 1 cut(s) 66
Fnu4HI GCNGC 3 cut(s) 81, 108, 111
FokI GGATG 2 cut(s) 47, 440
Fsp4HI GCNGC 3 cut(s) 81, 108, 111
GluI GCNGC 3 cut(s) 81, 108, 111
GsaI CCCAGC 1 cut(s) 125
HaeIII GGCC 1 cut(s) 269
Hin1II CATG 1 cut(s) 70
HpyAV CCTTC 3 cut(s) 156, 297, 429
HpyCH4III ACNGT 1 cut(s) 250
HpyF10VI GCNNNNNNNGC 4 cut(s) 175, 217, 283, 358
Hsp92II CATG 1 cut(s) 70
LpnPI CCDG 6 cut(s) 117, 135, 230, 357, 396, 462
Lsp1109I GCAGC 2 cut(s) 67, 119
LweI GCATC 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 48
MboII GAAGA 2 cut(s) 13, 251
MluCI AATT 5 cut(s) 141, 401, 423, 444, 481
MnlI CCTC 6 cut(s) 180, 190, 232, 328, 384, 473
MseI TTAA 1 cut(s) 484
MslI CAYNNNNRTG 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 110
MwoI GCNNNNNNNGC 4 cut(s) 175, 217, 283, 358
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 48
PflMI CCANNNNNTGG 1 cut(s) 94
PkrI GCNGC 3 cut(s) 82, 109, 112
PspFI CCCAGC 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 135
RseI CAYNNNNRTG 1 cut(s) 65
SaqAI TTAA 1 cut(s) 484
SatI GCNGC 3 cut(s) 81, 108, 111
SetI ASST 4 cut(s) 82, 93, 320, 376
SfaNI GCATC 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
Sse9I AATT 5 cut(s) 141, 401, 423, 444, 481
SsiI CCGC 3 cut(s) 41, 110, 131
TaaI ACNGT 1 cut(s) 250
TasI AATT 5 cut(s) 141, 401, 423, 444, 481
TauI GCSGC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 484
Tru9I TTAA 1 cut(s) 484
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 1 cut(s) 48
TseI GCWGC 2 cut(s) 80, 107
Tsp45I GTSAC 1 cut(s) 48
TspRI CASTG 1 cut(s) 180
Van91I CCANNNNNTGG 1 cut(s) 94
XapI RAATTY 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.