Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0012659

Physical Location & Seq

Genomic Coordinates Forward (+)

23266068 .. 23276475

Gene Structure 10408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG229700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAAACACCCATGCTTACTTTTTAAAGATGATATTCGCCTTGGCAGCTCCATTAATTTCAATGATGACTCTTCCCAAGCAGTTCTTCGTTCTGTCTTTGGTCGCAGTCTTGTCGCTCTCGAGCACCCAAATGAACCAAGCAGCTCGCTACCTCTTGGACACAGCAGCAGCTCCTCCACCAGCACTGCCAGTAGTGCCCGCGATTCCCTCTCTGCCCAAGACTGCATTGCCTCCACTACCCTCGGCACCGACACTGCCCAAGGCCACCCTGCCCCCGTTGCCCTCGATACCAACACTGCCCAAGGCCACATTACCACCATTGCCCTCAAATCCCTTACCTACACTTCCAACTACCCCAACTTCTCCAAAGGCCACCTTGCCACCATTGCCATCTACTCTGTTGCCTACATCGCCTACCACCCCACCTGTAATCCCATCTTTGCCAAAATCAGTATTGCCTACTGTGCCGACAACCCCCTTGTCTGCGACACTACCTCCATTGCCAGCCAGCTCACTACCAACACTACCCAAGGCCACATTGCCACCCCTGCCCTCAAACCCCTTGCCTTCACTTCCGACTGCCCCAACTCTGCCAAAGGCCACATTGCCGCCATTGCCATCAATACCATCTTTTCCGAAATCAGCATTGCCTACAACTCCCTTGCCAACTACACTACCTCCGTTGCCAGCCAACTCACTGCCTACACTCACGCCAACAATCCCCAAAACTCCATCCGCAATTCCTTCGACTCCTATCTCGACTATAAGAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

27.38

Weight (kDa)

6.77

Isoelectric Point (pI)

31.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012659)

Species	Orthologous Gene IDs
malus_domestica	MD03G1126700.v1.1
prunus_persica	Prupe.6G111400_v2.0.a1 Prupe.6G197700_v2.0.a1 Prupe.6G197800_v2.0.a1 Prupe.6G197900_v2.0.a1 Prupe.6G198000_v2.0.a1 Prupe.6G198100_v2.0.a1
pyrus_communis	pycom15g27790
rosa_chinensis	RchiOBHm_Chr2g0111391 RchiOBHm_Chr2g0111401
rosa_roxburghii	Rroxscaffold_2G00132410 Rroxscaffold_2G00132420
rosa_samantha	Rh2AG226600 Rh2BG238300 Rh2BG238400 Rh2CG229700 Rh2DG234000
rosa_wichuraiana	Rw2G017480 Rw2G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	245
AccII	CGCG	1 cut(s)	201
AciI	CCGC	3 cut(s)	199, 609, 736
AgsI	TTSAA	1 cut(s)	61
AjuI	GAANNNNNNNTTGG	2 cut(s)	69, 101
AluBI	AGCT	4 cut(s)	48, 144, 171, 511
AluI	AGCT	4 cut(s)	48, 144, 171, 511
Alw21I	GWGCWC	1 cut(s)	126
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	5 cut(s)	262, 304, 370, 532, 598
ApeKI	GCWGC	4 cut(s)	45, 141, 165, 168
AseI	ATTAAT	1 cut(s)	54
AvaI	CYCGRG	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	4 cut(s)	57, 153, 177, 180
BccI	CCATC	5 cut(s)	398, 443, 626, 635, 740
BcgI	CGANNNNNNTGC	4 cut(s)	94, 128, 727, 761
BisI	GCNGC	5 cut(s)	46, 142, 166, 169, 609
BlsI	GCNGC	5 cut(s)	47, 143, 167, 170, 610
BmeT110I	CYCGRG	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	247
BsaJI	CCNNGG	5 cut(s)	40, 241, 259, 301, 529
BsaXI	ACNNNNNCTCC	4 cut(s)	479, 509, 662, 692
Bse1I	ACTGG	1 cut(s)	189
Bse3DI	GCAATG	8 cut(s)	225, 318, 384, 498, 537, 603, 612, 645
BseDI	CCNNGG	5 cut(s)	40, 241, 259, 301, 529
BseGI	GGATG	1 cut(s)	732
BseMI	GCAATG	8 cut(s)	225, 318, 384, 498, 537, 603, 612, 645
BseNI	ACTGG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	163
BseSI	GKGCMC	1 cut(s)	199
BseXI	GCAGC	4 cut(s)	57, 153, 177, 180
Bsh1236I	CGCG	1 cut(s)	201
BshFI	GGCC	5 cut(s)	264, 306, 372, 534, 600
BshNI	GGYRCC	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	119
BsnI	GGCC	5 cut(s)	264, 306, 372, 534, 600
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	126, 199
BspACI	CCGC	3 cut(s)	199, 609, 736
BspANI	GGCC	5 cut(s)	264, 306, 372, 534, 600
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	247
BspT107I	GGYRCC	1 cut(s)	245
BsrDI	GCAATG	8 cut(s)	225, 318, 384, 498, 537, 603, 612, 645
BsrI	ACTGG	1 cut(s)	189
BssECI	CCNNGG	5 cut(s)	40, 241, 259, 301, 529
BssT1I	CCWWGG	4 cut(s)	40, 259, 301, 529
Bst4CI	ACNGT	1 cut(s)	464
Bst6I	CTCTTC	1 cut(s)	76
BstC8I	GCNNGC	5 cut(s)	146, 199, 505, 509, 688
BstF5I	GGATG	1 cut(s)	732
BstFNI	CGCG	1 cut(s)	201
BstMWI	GCNNNNNNNGC	8 cut(s)	45, 194, 278, 386, 410, 464, 548, 614
BstSLI	GKGCMC	1 cut(s)	199
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	4 cut(s)	57, 153, 177, 180
BsuRI	GGCC	5 cut(s)	264, 306, 372, 534, 600
BtgZI	GCGATG	1 cut(s)	394
BtsCI	GGATG	1 cut(s)	732
BtsI	GCAGTG	4 cut(s)	183, 252, 294, 696
BtsIMutI	CAGTG	4 cut(s)	183, 252, 294, 696
Cac8I	GCNNGC	5 cut(s)	146, 199, 505, 509, 688
CviAII	CATG	1 cut(s)	12
DraI	TTTAAA	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Eco130I	CCWWGG	4 cut(s)	40, 259, 301, 529
Eco88I	CYCGRG	1 cut(s)	119
EcoT14I	CCWWGG	4 cut(s)	40, 259, 301, 529
ErhI	CCWWGG	4 cut(s)	40, 259, 301, 529
FaeI	CATG	1 cut(s)	15
FaiI	YATR	2 cut(s)	13, 765
FalI	AAGNNNNNCTT	4 cut(s)	69, 101, 360, 392
FatI	CATG	1 cut(s)	11
FauI	CCCGC	1 cut(s)	206
Fnu4HI	GCNGC	5 cut(s)	46, 142, 166, 169, 609
FokI	GGATG	1 cut(s)	719
Fsp4HI	GCNGC	5 cut(s)	46, 142, 166, 169, 609
GluI	GCNGC	5 cut(s)	46, 142, 166, 169, 609
HaeIII	GGCC	5 cut(s)	264, 306, 372, 534, 600
Hin1II	CATG	1 cut(s)	15
HinfI	GANTC	3 cut(s)	68, 203, 749
Hpy188I	TCNGA	2 cut(s)	577, 637
Hpy188III	TCNNGA	2 cut(s)	119, 758
HpyAV	CCTTC	2 cut(s)	577, 754
HpyCH4III	ACNGT	1 cut(s)	464
HpyCH4V	TGCA	1 cut(s)	225
HpyF10VI	GCNNNNNNNGC	8 cut(s)	45, 194, 278, 386, 410, 464, 548, 614
Hsp92II	CATG	1 cut(s)	15
LmnI	GCTCC	2 cut(s)	53, 176
LpnPI	CCDG	8 cut(s)	193, 202, 282, 439, 517, 521, 561, 700
Lsp1109I	GCAGC	4 cut(s)	57, 153, 177, 180
MboII	GAAGA	2 cut(s)	63, 77
MhlI	GDGCHC	2 cut(s)	126, 199
MluCI	AATT	2 cut(s)	55, 739
MlyI	GAGTC	2 cut(s)	62, 743
MmeI	TCCRAC	2 cut(s)	372, 600
MseI	TTAA	2 cut(s)	24, 54
MslI	CAYNNNNRTG	1 cut(s)	129
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	8 cut(s)	45, 194, 278, 386, 410, 464, 548, 614
NlaIII	CATG	1 cut(s)	15
NlaIV	GGNNCC	1 cut(s)	247
NmeAIII	GCCGAG	1 cut(s)	222
PaeR7I	CTCGAG	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	5 cut(s)	47, 143, 167, 170, 610
PleI	GAGTC	2 cut(s)	62, 743
PpsI	GAGTC	2 cut(s)	62, 743
PshBI	ATTAAT	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	247
RseI	CAYNNNNRTG	1 cut(s)	129
SaqAI	TTAA	2 cut(s)	24, 54
SatI	GCNGC	5 cut(s)	46, 142, 166, 169, 609
SchI	GAGTC	2 cut(s)	62, 743
SduI	GDGCHC	2 cut(s)	126, 199
Sfr274I	CTCGAG	1 cut(s)	119
SlaI	CTCGAG	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	2 cut(s)	55, 739
SsiI	CCGC	3 cut(s)	199, 609, 736
StyI	CCWWGG	4 cut(s)	40, 259, 301, 529
TaaI	ACNGT	1 cut(s)	464
TaqI	TCGA	4 cut(s)	120, 285, 747, 759
TasI	AATT	2 cut(s)	55, 739
TauI	GCSGC	1 cut(s)	611
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	2 cut(s)	24, 54
Tru9I	TTAA	2 cut(s)	24, 54
TscAI	CASTG	4 cut(s)	190, 259, 301, 703
TseI	GCWGC	4 cut(s)	45, 141, 165, 168
TspDTI	ATGAA	2 cut(s)	17, 147
TspGWI	ACGGA	1 cut(s)	670
TspRI	CASTG	4 cut(s)	190, 259, 301, 703
VspI	ATTAAT	1 cut(s)	54
XhoI	CTCGAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.