RchiOBHm_Chr2g0111391

RNA-binding protein 12-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012659
Physical Location & Seq
Forward (+)
23030160 .. 23030912
753 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48498

Sequence Viewer

Length: 753 bp
ATGATATTCGCCTTGGCAGCTCCATTAATTTCAATGATGACTCTTCCCAAGCAGTTCTTCGTTCTGTCTTTGGTCGCAGTCTTGTCGCTCTCGAGCACCCAAATGAACCAAGCAGCTCGCTACCTCTTGGACACAGCAGCAGCTCCTCCACCAGCACTGCCAGTAGTGCCCGCGATTCCCTCTCTGCCCAAGACTGCATTGCCTCCACTACCCTCGGCACCGACACTGCCCAAGGCCACCCTGCCCCCGTTGCCCTCGATACCAACACTGCCCAAGGCCACATTACCACCATTGCCCTCAAATCCCTTACCTACACTTCCAACTACCCCAACTTCTCCAAAGGCCACCTTGCCACCATTGCCATCTACTCTGTTGCCTACATCGCCTACCACCCCACCTGTAATCCCATCTTTGCCAAAATCAGTATTGCCTACTGTGCCGACAACCCCCTTGTCTGCGACACTACCTCCATTGCCAGCCAGCTCACTACCAACACTACCCAAGGCCACATTGCCACCCCTGCCCTCAAACCCCTTGCCTTCACTTCCGACTGCCCCAACTCTGCCAAAGGCCACATTGCCGCCATTGCCATCAATACCATCTTTTCCGAAATCAGCATTGCCTACAACTCCCTTGCCAACTACACTACCTCCGTTGCCAGCCAACTCACTGCCTACACTCACGCCAACAATCCCCAAAACTCCATCCGCAATTCCTTCGACTCCGTTCCTCTCTCCACCCCCATCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

25.44

Weight (kDa)

10.64

Isoelectric Point (pI)

71.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 217
AccII CGCG 1 cut(s) 173
AciI CCGC 3 cut(s) 171, 581, 708
AgsI TTSAA 1 cut(s) 33
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AluBI AGCT 4 cut(s) 20, 116, 143, 483
AluI AGCT 4 cut(s) 20, 116, 143, 483
Alw21I GWGCWC 1 cut(s) 98
Ama87I CYCGRG 1 cut(s) 91
AoxI GGCC 5 cut(s) 234, 276, 342, 504, 570
ApeKI GCWGC 4 cut(s) 17, 113, 137, 140
AseI ATTAAT 1 cut(s) 26
AvaI CYCGRG 1 cut(s) 91
BaeGI GKGCMC 1 cut(s) 171
BanI GGYRCC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 98
BbvI GCAGC 4 cut(s) 29, 125, 149, 152
BccI CCATC 6 cut(s) 370, 415, 598, 607, 712, 751
BcgI CGANNNNNNTGC 4 cut(s) 66, 100, 699, 733
BisI GCNGC 5 cut(s) 18, 114, 138, 141, 581
BlsI GCNGC 5 cut(s) 19, 115, 139, 142, 582
BmeT110I CYCGRG 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 219
BsaJI CCNNGG 5 cut(s) 12, 213, 231, 273, 501
BsaXI ACNNNNNCTCC 4 cut(s) 451, 481, 634, 664
Bse1I ACTGG 1 cut(s) 161
Bse3DI GCAATG 8 cut(s) 197, 290, 356, 470, 509, 575, 584, 617
BseDI CCNNGG 5 cut(s) 12, 213, 231, 273, 501
BseGI GGATG 1 cut(s) 704
BseMI GCAATG 8 cut(s) 197, 290, 356, 470, 509, 575, 584, 617
BseNI ACTGG 1 cut(s) 161
BseRI GAGGAG 1 cut(s) 135
BseSI GKGCMC 1 cut(s) 171
BseXI GCAGC 4 cut(s) 29, 125, 149, 152
Bsh1236I CGCG 1 cut(s) 173
BshFI GGCC 5 cut(s) 236, 278, 344, 506, 572
BshNI GGYRCC 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 98
BsiHKCI CYCGRG 1 cut(s) 91
BsnI GGCC 5 cut(s) 236, 278, 344, 506, 572
BsoBI CYCGRG 1 cut(s) 91
Bsp1286I GDGCHC 2 cut(s) 98, 171
BspACI CCGC 3 cut(s) 171, 581, 708
BspANI GGCC 5 cut(s) 236, 278, 344, 506, 572
BspFNI CGCG 1 cut(s) 173
BspLI GGNNCC 1 cut(s) 219
BspT107I GGYRCC 1 cut(s) 217
BsrDI GCAATG 8 cut(s) 197, 290, 356, 470, 509, 575, 584, 617
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 5 cut(s) 12, 213, 231, 273, 501
BssT1I CCWWGG 4 cut(s) 12, 231, 273, 501
Bst4CI ACNGT 1 cut(s) 436
Bst6I CTCTTC 1 cut(s) 48
BstC8I GCNNGC 5 cut(s) 118, 171, 477, 481, 660
BstF5I GGATG 1 cut(s) 704
BstFNI CGCG 1 cut(s) 173
BstMWI GCNNNNNNNGC 8 cut(s) 17, 166, 250, 358, 382, 436, 520, 586
BstSLI GKGCMC 1 cut(s) 171
BstUI CGCG 1 cut(s) 173
BstV1I GCAGC 4 cut(s) 29, 125, 149, 152
BsuRI GGCC 5 cut(s) 236, 278, 344, 506, 572
BtgZI GCGATG 1 cut(s) 366
BtsCI GGATG 1 cut(s) 704
BtsI GCAGTG 4 cut(s) 155, 224, 266, 668
BtsIMutI CAGTG 4 cut(s) 155, 224, 266, 668
Cac8I GCNNGC 5 cut(s) 118, 171, 477, 481, 660
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Eco130I CCWWGG 4 cut(s) 12, 231, 273, 501
Eco88I CYCGRG 1 cut(s) 91
EcoT14I CCWWGG 4 cut(s) 12, 231, 273, 501
ErhI CCWWGG 4 cut(s) 12, 231, 273, 501
FalI AAGNNNNNCTT 4 cut(s) 41, 73, 332, 364
FauI CCCGC 1 cut(s) 178
Fnu4HI GCNGC 5 cut(s) 18, 114, 138, 141, 581
FokI GGATG 1 cut(s) 691
Fsp4HI GCNGC 5 cut(s) 18, 114, 138, 141, 581
GluI GCNGC 5 cut(s) 18, 114, 138, 141, 581
HaeIII GGCC 5 cut(s) 236, 278, 344, 506, 572
HinfI GANTC 3 cut(s) 40, 175, 721
Hpy188I TCNGA 2 cut(s) 549, 609
Hpy188III TCNNGA 1 cut(s) 91
HpyAV CCTTC 2 cut(s) 549, 726
HpyCH4III ACNGT 1 cut(s) 436
HpyCH4V TGCA 1 cut(s) 197
HpyF10VI GCNNNNNNNGC 8 cut(s) 17, 166, 250, 358, 382, 436, 520, 586
LmnI GCTCC 2 cut(s) 25, 148
LpnPI CCDG 8 cut(s) 165, 174, 254, 411, 489, 493, 533, 672
Lsp1109I GCAGC 4 cut(s) 29, 125, 149, 152
MboII GAAGA 2 cut(s) 35, 49
MhlI GDGCHC 2 cut(s) 98, 171
MluCI AATT 2 cut(s) 27, 711
MlyI GAGTC 2 cut(s) 34, 715
MmeI TCCRAC 2 cut(s) 344, 572
MseI TTAA 1 cut(s) 26
MslI CAYNNNNRTG 1 cut(s) 101
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 8 cut(s) 17, 166, 250, 358, 382, 436, 520, 586
NlaIV GGNNCC 1 cut(s) 219
NmeAIII GCCGAG 1 cut(s) 194
PaeR7I CTCGAG 1 cut(s) 91
PfeI GAWTC 1 cut(s) 175
PkrI GCNGC 5 cut(s) 19, 115, 139, 142, 582
PleI GAGTC 2 cut(s) 34, 715
PpsI GAGTC 2 cut(s) 34, 715
PshBI ATTAAT 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 219
RseI CAYNNNNRTG 1 cut(s) 101
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 5 cut(s) 18, 114, 138, 141, 581
SchI GAGTC 2 cut(s) 34, 715
SduI GDGCHC 2 cut(s) 98, 171
Sfr274I CTCGAG 1 cut(s) 91
SlaI CTCGAG 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
Sse9I AATT 2 cut(s) 27, 711
SsiI CCGC 3 cut(s) 171, 581, 708
StyI CCWWGG 4 cut(s) 12, 231, 273, 501
TaaI ACNGT 1 cut(s) 436
TaqI TCGA 3 cut(s) 92, 257, 719
TasI AATT 2 cut(s) 27, 711
TauI GCSGC 1 cut(s) 583
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TscAI CASTG 4 cut(s) 162, 231, 273, 675
TseI GCWGC 4 cut(s) 17, 113, 137, 140
TspDTI ATGAA 1 cut(s) 119
TspGWI ACGGA 2 cut(s) 642, 714
TspRI CASTG 4 cut(s) 162, 231, 273, 675
VspI ATTAAT 1 cut(s) 26
XhoI CTCGAG 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.