Prupe.6G111400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0012659
Physical Location & Seq
Reverse (-)
7995983 .. 7996456
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G111400.1

Sequence Viewer

Length: 474 bp
ATGGTGTTGTCACTCTCAAGCTACATCCATGTGAGCCTAGCAGCTCGCCACCTTTTGGACACCCCAGCAGCTCCACCACCGGCATTGACTGTGCCTACAATTCCATCTCTGCCCAAGCCCACATTGCCCACATTCTCGCCATTGCCCTCATTACCAACACTGCCCAAGGCTGCATTGCCGCCATTGCCCTCAGTACCAACACTGCCCAAGGCCACATTGCCGCCATTGCCCTCAGTACCAACACTGCCCAAGGCCACATTGCCCACACTGCCAACTAACCCAACTCTACAACCACTCCCAAGCTCCCAAGTCCCTTCTTTGCCAAAACCAGCATTGCCTACGTTGCCCACAACCCCAAAGGTGACACTACCTCCATTGCCGGCCAACCCAATACTGCCTACATTCCCGACAACAATCCCTTCAATCCCAACTATTCCATCAATTCCATTCTTCTCCCCACCTCCATCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

16.22

Weight (kDa)

10.39

Isoelectric Point (pI)

79.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 55
AciI CCGC 2 cut(s) 179, 221
AcoI YGGCCR 1 cut(s) 381
AfaI GTAC 2 cut(s) 195, 237
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 1 cut(s) 423
AluBI AGCT 4 cut(s) 21, 44, 71, 303
AluI AGCT 4 cut(s) 21, 44, 71, 303
AoxI GGCC 3 cut(s) 210, 252, 381
ApeKI GCWGC 3 cut(s) 41, 68, 170
AsuHPI GGTGA 1 cut(s) 373
BbvI GCAGC 3 cut(s) 53, 80, 157
BccI CCATC 3 cut(s) 112, 445, 472
BfaI CTAG 1 cut(s) 38
BisI GCNGC 5 cut(s) 42, 69, 171, 179, 221
BlsI GCNGC 5 cut(s) 43, 70, 172, 180, 222
BsaJI CCNNGG 3 cut(s) 165, 207, 249
BsaXI ACNNNNNCTCC 4 cut(s) 279, 309, 355, 385
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse118I RCCGGY 2 cut(s) 79, 379
Bse3DI GCAATG 9 cut(s) 122, 140, 173, 182, 215, 224, 257, 332, 374
BseDI CCNNGG 3 cut(s) 165, 207, 249
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMI GCAATG 9 cut(s) 122, 140, 173, 182, 215, 224, 257, 332, 374
BseMII CTCAG 2 cut(s) 204, 246
BseXI GCAGC 3 cut(s) 53, 80, 157
BseYI CCCAGC 1 cut(s) 64
BshFI GGCC 3 cut(s) 212, 254, 383
BsiSI CCGG 2 cut(s) 80, 380
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 1 cut(s) 55
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 3 cut(s) 212, 254, 383
BspACI CCGC 2 cut(s) 179, 221
BspANI GGCC 3 cut(s) 212, 254, 383
BspCNI CTCAG 2 cut(s) 203, 245
BsrDI GCAATG 9 cut(s) 122, 140, 173, 182, 215, 224, 257, 332, 374
BsrFI RCCGGY 2 cut(s) 79, 379
BssAI RCCGGY 2 cut(s) 79, 379
BssECI CCNNGG 3 cut(s) 165, 207, 249
BssT1I CCWWGG 3 cut(s) 165, 207, 249
Bst4CI ACNGT 1 cut(s) 91
BstC8I GCNNGC 2 cut(s) 46, 381
BstDEI CTNAG 2 cut(s) 190, 232
BstF5I GGATG 1 cut(s) 24
BstMWI GCNNNNNNNGC 5 cut(s) 124, 184, 226, 268, 343
BstV1I GCAGC 3 cut(s) 53, 80, 157
BsuRI GGCC 3 cut(s) 212, 254, 383
BtsCI GGATG 1 cut(s) 24
BtsI GCAGTG 4 cut(s) 158, 200, 242, 266
BtsIMutI CAGTG 4 cut(s) 158, 200, 242, 266
Cac8I GCNNGC 2 cut(s) 46, 381
Cfr10I RCCGGY 2 cut(s) 79, 379
Csp6I GTAC 2 cut(s) 194, 236
CspCI CAANNNNNGTGG 2 cut(s) 66, 101
CviAII CATG 1 cut(s) 29
CviQI GTAC 2 cut(s) 194, 236
DdeI CTNAG 2 cut(s) 190, 232
EaeI YGGCCR 1 cut(s) 381
Eco130I CCWWGG 3 cut(s) 165, 207, 249
EcoT14I CCWWGG 3 cut(s) 165, 207, 249
ErhI CCWWGG 3 cut(s) 165, 207, 249
FaeI CATG 1 cut(s) 32
FaiI YATR 1 cut(s) 30
FaqI GGGAC 1 cut(s) 296
FatI CATG 1 cut(s) 28
Fnu4HI GCNGC 5 cut(s) 42, 69, 171, 179, 221
FokI GGATG 1 cut(s) 11
Fsp4HI GCNGC 5 cut(s) 42, 69, 171, 179, 221
FspBI CTAG 1 cut(s) 38
GluI GCNGC 5 cut(s) 42, 69, 171, 179, 221
GsaI CCCAGC 1 cut(s) 68
HaeIII GGCC 3 cut(s) 212, 254, 383
HapII CCGG 2 cut(s) 80, 380
Hin1II CATG 1 cut(s) 32
HpaII CCGG 2 cut(s) 80, 380
HphI GGTGA 1 cut(s) 373
Hpy188III TCNNGA 1 cut(s) 406
HpyAV CCTTC 2 cut(s) 324, 429
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 1 cut(s) 341
HpyCH4V TGCA 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 5 cut(s) 124, 184, 226, 268, 343
HpyF3I CTNAG 2 cut(s) 190, 232
HpySE526I ACGT 1 cut(s) 341
Hsp92II CATG 1 cut(s) 32
KroI GCCGGC 1 cut(s) 379
KroNI GCCGGC 1 cut(s) 381
LmnI GCTCC 2 cut(s) 76, 308
LpnPI CCDG 4 cut(s) 78, 93, 342, 393
Lsp1109I GCAGC 3 cut(s) 53, 80, 157
MaeI CTAG 1 cut(s) 38
MaeII ACGT 1 cut(s) 341
MaeIII GTNAC 2 cut(s) 9, 361
MboII GAAGA 1 cut(s) 442
MluCI AATT 2 cut(s) 99, 441
MnlI CCTC 5 cut(s) 157, 199, 241, 381, 471
MroNI GCCGGC 1 cut(s) 379
MslI CAYNNNNRTG 1 cut(s) 29
MspI CCGG 2 cut(s) 80, 380
MwoI GCNNNNNNNGC 5 cut(s) 124, 184, 226, 268, 343
NaeI GCCGGC 1 cut(s) 381
NgoMIV GCCGGC 1 cut(s) 379
NlaIII CATG 1 cut(s) 32
NmuCI GTSAC 2 cut(s) 9, 361
PdiI GCCGGC 1 cut(s) 381
PflMI CCANNNNNTGG 1 cut(s) 55
PkrI GCNGC 5 cut(s) 43, 70, 172, 180, 222
PspFI CCCAGC 1 cut(s) 64
RsaI GTAC 2 cut(s) 195, 237
RsaNI GTAC 2 cut(s) 194, 236
RseI CAYNNNNRTG 1 cut(s) 29
SatI GCNGC 5 cut(s) 42, 69, 171, 179, 221
SetI ASST 9 cut(s) 23, 46, 54, 73, 305, 344, 363, 373, 463
SmiMI CAYNNNNRTG 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 2 cut(s) 99, 441
SsiI CCGC 2 cut(s) 179, 221
SspMI CTAG 1 cut(s) 38
StyI CCWWGG 3 cut(s) 165, 207, 249
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 1 cut(s) 344
TasI AATT 2 cut(s) 99, 441
TauI GCSGC 2 cut(s) 181, 223
TscAI CASTG 4 cut(s) 165, 207, 249, 273
TseFI GTSAC 2 cut(s) 9, 361
TseI GCWGC 3 cut(s) 41, 68, 170
Tsp45I GTSAC 2 cut(s) 9, 361
TspRI CASTG 4 cut(s) 165, 207, 249, 273
Van91I CCANNNNNTGG 1 cut(s) 55
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.