Prupe.6G197700_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
20479213 .. 20480136
924 bp
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UTR
Exon/CDS
Intron
Prupe.6G197700.1

Sequence Viewer

Length: 564 bp
ATGGCTTTTCCCAAGCTTTTCTTCATTTCGTCTTTGCTGGTGGTGATTTTGTCAGCCTCAAGCACCCAAATGAGCCATGCAGCTCGCCACCTTTTGGACACACCAGCAGCAGCTCCACCCCCAACACTGGCAATCCCAACAATCCCCTCTCTGCCAATTCCCACTCAACTGCCTCCATTGCCTTCACTACCAACACTTCCCAAGCCCTCAAACACCTTGCCTACACTTCCAACTGCCCCAGCTCTGCCCAAGACCACATTGCCTCCGCTTCCCTCAACCCCATTGCCTACGCTTCCAACTGCTCCAACTCTGCCAAAGCCGGCCACGTTGCCACCGTTGCCCTCTACCCAATTGCCTACTCTCCCAACTACTCTGCCTCCGTTGCCAACCTCCCAACCCCAAATCCCATCTTTGCCAAAATCCACATTGCCTACGGTGCCCACAACCCTCCCTCCACTGCCAGCCAACCCACTTCCCTCGTTCCCCTCAACAATCCCTTCAATTCCCACAATTCCATCAACTATTCCATCGATTCCATTCTTCTCCCCACCCCCATCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

19.31

Weight (kDa)

10.58

Isoelectric Point (pI)

74.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 436
AccB7I CCANNNNNTGG 1 cut(s) 94
AciI CCGC 1 cut(s) 266
AcoI YGGCCR 1 cut(s) 321
AfiI CCNNNNNNNGG 2 cut(s) 94, 127
AgsI TTSAA 1 cut(s) 501
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 4 cut(s) 16, 83, 113, 242
AluI AGCT 4 cut(s) 16, 83, 113, 242
AoxI GGCC 1 cut(s) 321
ApeKI GCWGC 3 cut(s) 80, 107, 110
AsuHPI GGTGA 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 441
BanI GGYRCC 1 cut(s) 436
BbvI GCAGC 3 cut(s) 92, 119, 122
BccI CCATC 4 cut(s) 415, 523, 535, 562
BisI GCNGC 3 cut(s) 81, 108, 111
BlsI GCNGC 3 cut(s) 82, 109, 112
BmiI GGNNCC 1 cut(s) 438
BpuEI CTTGAG 1 cut(s) 43
Bsa29I ATCGAT 1 cut(s) 530
BsaXI ACNNNNNCTCC 6 cut(s) 247, 277, 361, 391, 436, 466
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 127
Bse118I RCCGGY 1 cut(s) 319
Bse1I ACTGG 1 cut(s) 132
Bse3DI GCAATG 4 cut(s) 176, 257, 281, 425
BseCI ATCGAT 1 cut(s) 530
BseLI CCNNNNNNNGG 2 cut(s) 94, 127
BseMI GCAATG 4 cut(s) 176, 257, 281, 425
BseNI ACTGG 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 441
BseXI GCAGC 3 cut(s) 92, 119, 122
BseYI CCCAGC 1 cut(s) 238
BshFI GGCC 1 cut(s) 323
BshNI GGYRCC 1 cut(s) 436
BshVI ATCGAT 1 cut(s) 530
BsiSI CCGG 1 cut(s) 320
BslI CCNNNNNNNGG 2 cut(s) 94, 127
BsnI GGCC 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 441
BspACI CCGC 1 cut(s) 266
BspANI GGCC 1 cut(s) 323
BspDI ATCGAT 1 cut(s) 530
BspLI GGNNCC 1 cut(s) 438
BspT107I GGYRCC 1 cut(s) 436
BsrDI GCAATG 4 cut(s) 176, 257, 281, 425
BsrFI RCCGGY 1 cut(s) 319
BsrI ACTGG 1 cut(s) 132
BssAI RCCGGY 1 cut(s) 319
Bst4CI ACNGT 2 cut(s) 336, 436
BstC8I GCNNGC 3 cut(s) 85, 321, 462
BstMWI GCNNNNNNNGC 4 cut(s) 178, 337, 382, 436
BstSLI GKGCMC 1 cut(s) 441
BstV1I GCAGC 3 cut(s) 92, 119, 122
Bsu15I ATCGAT 1 cut(s) 530
BsuRI GGCC 1 cut(s) 323
BsuTUI ATCGAT 1 cut(s) 530
BtsI GCAGTG 1 cut(s) 455
BtsIMutI CAGTG 2 cut(s) 125, 455
Cac8I GCNNGC 3 cut(s) 85, 321, 462
Cfr10I RCCGGY 1 cut(s) 319
ClaI ATCGAT 1 cut(s) 530
CviAII CATG 1 cut(s) 77
EaeI YGGCCR 1 cut(s) 321
FaeI CATG 1 cut(s) 80
FaiI YATR 1 cut(s) 78
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 1 cut(s) 76
Fnu4HI GCNGC 3 cut(s) 81, 108, 111
Fsp4HI GCNGC 3 cut(s) 81, 108, 111
GluI GCNGC 3 cut(s) 81, 108, 111
GsaI CCCAGC 1 cut(s) 242
HaeIII GGCC 1 cut(s) 323
HapII CCGG 1 cut(s) 320
Hin1II CATG 1 cut(s) 80
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 1 cut(s) 532
HpaII CCGG 1 cut(s) 320
HphI GGTGA 1 cut(s) 55
HpyAV CCTTC 2 cut(s) 192, 507
HpyCH4III ACNGT 2 cut(s) 336, 436
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 4 cut(s) 178, 337, 382, 436
HpySE526I ACGT 1 cut(s) 326
Hsp92II CATG 1 cut(s) 80
KroI GCCGGC 1 cut(s) 319
KroNI GCCGGC 1 cut(s) 321
LmnI GCTCC 2 cut(s) 118, 307
LpnPI CCDG 6 cut(s) 23, 113, 117, 252, 333, 474
Lsp1109I GCAGC 3 cut(s) 92, 119, 122
MaeII ACGT 1 cut(s) 326
MboII GAAGA 2 cut(s) 13, 532
MfeI CAATTG 1 cut(s) 350
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 5 cut(s) 156, 350, 501, 510, 559
MmeI TCCRAC 3 cut(s) 254, 320, 329
MroNI GCCGGC 1 cut(s) 319
MseI TTAA 1 cut(s) 562
MslI CAYNNNNRTG 1 cut(s) 68
MspI CCGG 1 cut(s) 320
MunI CAATTG 1 cut(s) 350
MwoI GCNNNNNNNGC 4 cut(s) 178, 337, 382, 436
NaeI GCCGGC 1 cut(s) 321
NgoMIV GCCGGC 1 cut(s) 319
NlaIII CATG 1 cut(s) 80
NlaIV GGNNCC 1 cut(s) 438
PcsI WCGNNNNNNNCGW 1 cut(s) 332
PdiI GCCGGC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 532
PflMI CCANNNNNTGG 1 cut(s) 94
PkrI GCNGC 3 cut(s) 82, 109, 112
PspFI CCCAGC 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 438
RseI CAYNNNNRTG 1 cut(s) 68
SaqAI TTAA 1 cut(s) 562
SatI GCNGC 3 cut(s) 81, 108, 111
SduI GDGCHC 1 cut(s) 441
SetI ASST 8 cut(s) 18, 85, 93, 115, 218, 244, 329, 392
SmiMI CAYNNNNRTG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 5 cut(s) 156, 350, 501, 510, 559
SsiI CCGC 1 cut(s) 266
TaaI ACNGT 2 cut(s) 336, 436
TaiI ACGT 1 cut(s) 329
TaqI TCGA 1 cut(s) 530
TasI AATT 5 cut(s) 156, 350, 501, 510, 559
TfiI GAWTC 1 cut(s) 532
Tru1I TTAA 1 cut(s) 562
Tru9I TTAA 1 cut(s) 562
TscAI CASTG 2 cut(s) 132, 462
TseI GCWGC 3 cut(s) 80, 107, 110
TspDTI ATGAA 1 cut(s) 13
TspGWI ACGGA 1 cut(s) 369
TspRI CASTG 2 cut(s) 132, 462
Van91I CCANNNNNTGG 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.