Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0005604

Physical Location & Seq

Genomic Coordinates Reverse (-)

18452125 .. 18462757

Gene Structure 10633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1156800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGCAAAAGGATGCTGTTCCGGCGGTGTCTGCTGATGTGGTTTTTGCTTCAAGTCGGTTTCCTAATTACAGAATTGGAGCTAACAATCAGATTGTAGAGGGAAAGGATGACCGAAAGGTACTGTCGATGAAGGAAGTTGTAGCCCGTGAGACAGCACAATTGTTGGAACAGCAGAATCGCCTTTCCGTCCGAGACCTTGCCAGTAAATTTGAGAAAGGGTTGGCTGCTGCTGCTAAGTTGTCTGAAGAGGCTAGACTCAGGGAGGCAGCTTCTTTGGAAAAACATGTCCTTTTGAAGAAGCTTCGGGATGCACTAGAATCACTAAAAGGACGTGTGGCTGGTAGAAACAAGGATGATGTAGTGGATGCTATTTCAATGGTTGAGGCCTTAGCAGTTCAGTTGACTCAAAGAGAAGGGGAGTTAATACAAGAAAAAGCAGAGGTGAAGAAGCTAGCAAATTTTCTTAAGAAGGCTTCAGAAGATGCTAAAAAGCTTGTTGATGAGGAGAGAGCTTTTGCTCGTGCTGAAATTGAAAATGCCAGAGCGGCAGTACAGAGGGTGGAAAAAGCCCTTCAGGAACAAGAACAAATGTCGCGAGCTTCAGGAAAGCAGGACTTAGAAGAATTGATGAAAGAGGTTCAAGAGGCTAGACGAATCAAAATGCTGCATCAGCCAAGCAAGGTAATGGACATGGAACACGAGCTTCGAGCATTGAGGGCACAACTTACGGAGAAGTCTAAGAATTCTGTTCGGCTTCAAAAAGAGCTGGCAATGAGCAAGAGGGGCTTGGAGAAAATTTCCGAATTATTTGAATTAGATGGCCCTGAAGTTTTAGGGTCATATTTGCGGATTCAGCCTTGCTCTGGTGATGCTCCAGAACTCTGTAAATGTTTGATTCAATGGTATCGCGTATCATCTCAAGGTGGCAAGAAGGAGTCTATATCAGGAGCTATAAAATCAGTTTATGCCCCAGAGCCTTTTGATGTTGGGCGAGTCTTGCAAGTTGATATTATTTATGAAGGACAGAGGCTAACGCTGACAACTGCTGGTCCCATTGATCCTGCTGCTGGTTTGGGAAGCTATGTGGAGGCACTTGTACGGAAACATGATATTGAGTTCAATGTAGTTATTACCCAGATGAATGGGGTCAATCATCCTTCGGAATCTATTCATGTATTTCATGTTGGAAAAATGAGGATTAAACTTTGCAAGGGAAAAACTACAATTGCTAAAGAATACTTTTCTCCCTCAATGCAGGTATTAGAGATTTTTTCTTTGTTTTCCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0010119 GO:0016043 GO:0030029 GO:0030036 GO:0050789 GO:0050794 GO:0065007 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAB-ABD SCAB-IgPH SCAB_CC

Protein Analysis

430

Amino Acids

47.94

Weight (kDa)

8.77

Isoelectric Point (pI)

36.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCAB-ABD	PF16711	43 - 85	6.9e-24	Actin-binding domain of plant-specific actin-binding protein
SCAB_CC	PF16712	89 - 256	1.4e-81	Coiled-coil regions of plant-specific actin-binding protein
SCAB-Ig	PF16709	270 - 367	9.7e-45	Ig domain of plant-specific actin-binding protein
SCAB-PH	PF17684	370 - 420	3.2e-20	PH domain of plant-specific actin-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26770 AT2G26770 AT2G26770
fragaria_vesca	FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660
malus_domestica	MD03G1156800.v1.1
prunus_persica	Prupe.4G270000_v2.0.a1 Prupe.4G270000_v2.0.a1
pyrus_communis	pycom5153684g00130
rosa_chinensis	RchiOBHm_Chr5g0050171
rosa_laevigata	RLG00000034689
rosa_multiflora	Rmu_sc0002159.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030850
rosa_rugosa	Rorug05G0259100 Rorug05G0259200
rosa_samantha	Rh5AG330900 Rh5BG341600 Rh5CG368100 Rh5DG354400
rosa_wichuraiana	Rw5G031270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1246
AccBSI	CCGCTC	1 cut(s)	545
AccII	CGCG	2 cut(s)	595, 909
AciI	CCGC	3 cut(s)	23, 545, 847
AclWI	GGATC	1 cut(s)	1052
AcsI	RAATTY	4 cut(s)	206, 457, 742, 795
AcuI	CTGAAG	5 cut(s)	264, 459, 557, 585, 846
AfaI	GTAC	3 cut(s)	120, 552, 1098
AfiI	CCNNNNNNNGG	2 cut(s)	863, 1067
AflII	CTTAAG	1 cut(s)	464
AflIII	ACRYGT	2 cut(s)	283, 331
AgsI	TTSAA	9 cut(s)	51, 295, 375, 533, 641, 758, 812, 899, 1120
AjiI	CACGTC	1 cut(s)	332
Alw26I	GTCTC	2 cut(s)	143, 186
AlwI	GGATC	1 cut(s)	1052
AoxI	GGCC	2 cut(s)	384, 820
ApeKI	GCWGC	6 cut(s)	224, 227, 230, 266, 664, 1064
ApoI	RAATTY	4 cut(s)	206, 457, 742, 795
Asp700I	GAANNNNTTC	1 cut(s)	1167
AspS9I	GGNCC	2 cut(s)	821, 1049
AsuHPI	GGTGA	2 cut(s)	454, 878
AsuNHI	GCTAGC	1 cut(s)	451
AvaII	GGWCC	1 cut(s)	1049
BaeGI	GKGCMC	1 cut(s)	721
BauI	CACGAG	2 cut(s)	519, 698
BbvI	GCAGC	6 cut(s)	211, 214, 217, 278, 651, 1051
BccI	CCATC	1 cut(s)	812
BcoDI	GTCTC	2 cut(s)	143, 186
BfaI	CTAG	4 cut(s)	252, 314, 452, 648
BfrI	CTTAAG	1 cut(s)	464
BfuAI	ACCTGC	1 cut(s)	1246
BglI	GCCNNNNNGGC	1 cut(s)	545
BisI	GCNGC	7 cut(s)	225, 228, 231, 267, 546, 665, 1065
BlsI	GCNGC	7 cut(s)	226, 229, 232, 268, 547, 666, 1066
Bme18I	GGWCC	1 cut(s)	1049
BmgBI	CACGTC	1 cut(s)	332
BmgT120I	GGNCC	2 cut(s)	821, 1049
BmiI	GGNNCC	1 cut(s)	1051
BmsI	GCATC	5 cut(s)	298, 355, 472, 676, 859
BmtI	GCTAGC	1 cut(s)	455
BpmI	CTGGAG	1 cut(s)	858
Bpu10I	CCTNAGC	1 cut(s)	388
BpuEI	CTTGAG	1 cut(s)	903
BsaI	GGTCTC	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	2 cut(s)	863, 1067
Bse1I	ACTGG	1 cut(s)	201
Bse3DI	GCAATG	1 cut(s)	777
BseGI	GGATG	6 cut(s)	16, 112, 313, 358, 370, 1153
BseLI	CCNNNNNNNGG	2 cut(s)	863, 1067
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	1 cut(s)	271
BseNI	ACTGG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	518
BseSI	GKGCMC	1 cut(s)	721
BseXI	GCAGC	6 cut(s)	211, 214, 217, 278, 651, 1051
Bsh1236I	CGCG	2 cut(s)	595, 909
BshFI	GGCC	2 cut(s)	386, 822
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	1035
BslI	CCNNNNNNNGG	2 cut(s)	863, 1067
BsmAI	GTCTC	2 cut(s)	143, 186
BsmFI	GGGAC	1 cut(s)	1035
BsnI	GGCC	2 cut(s)	386, 822
Bso31I	GGTCTC	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	721
Bsp143I	GATC	1 cut(s)	1057
Bsp68I	TCGCGA	1 cut(s)	595
BspACI	CCGC	3 cut(s)	23, 545, 847
BspANI	GGCC	2 cut(s)	386, 822
BspCNI	CTCAG	1 cut(s)	270
BspFNI	CGCG	2 cut(s)	595, 909
BspLI	GGNNCC	1 cut(s)	1051
BspMI	ACCTGC	1 cut(s)	1246
BspOI	GCTAGC	1 cut(s)	455
BspPI	GGATC	1 cut(s)	1052
BspTI	CTTAAG	1 cut(s)	464
BspTNI	GGTCTC	1 cut(s)	186
BsrBI	CCGCTC	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	777
BsrI	ACTGG	1 cut(s)	201
BssMI	GATC	1 cut(s)	1057
BssSI	CACGAG	2 cut(s)	519, 698
Bst2BI	CACGAG	2 cut(s)	519, 698
Bst4CI	ACNGT	1 cut(s)	123
Bst6I	CTCTTC	1 cut(s)	240
BstAFI	CTTAAG	1 cut(s)	464
BstC8I	GCNNGC	3 cut(s)	453, 597, 768
BstDEI	CTNAG	5 cut(s)	234, 257, 388, 616, 738
BstF5I	GGATG	6 cut(s)	16, 112, 313, 358, 370, 1153
BstFNI	CGCG	2 cut(s)	595, 909
BstKTI	GATC	1 cut(s)	1060
BstMAI	GTCTC	2 cut(s)	143, 186
BstMBI	GATC	1 cut(s)	1057
BstMWI	GCNNNNNNNGC	9 cut(s)	20, 29, 230, 545, 670, 716, 783, 853, 997
BstNSI	RCATGY	1 cut(s)	287
BstSLI	GKGCMC	1 cut(s)	721
BstUI	CGCG	2 cut(s)	595, 909
BstV1I	GCAGC	6 cut(s)	211, 214, 217, 278, 651, 1051
BstXI	CCANNNNNNTGG	1 cut(s)	1142
BsuRI	GGCC	2 cut(s)	386, 822
BtrI	CACGTC	1 cut(s)	332
BtsCI	GGATG	6 cut(s)	16, 112, 313, 358, 370, 1153
BtuMI	TCGCGA	1 cut(s)	595
BveI	ACCTGC	1 cut(s)	1246
Cac8I	GCNNGC	3 cut(s)	453, 597, 768
Cfr13I	GGNCC	2 cut(s)	821, 1049
Csp6I	GTAC	3 cut(s)	119, 551, 1097
CviAII	CATG	5 cut(s)	284, 691, 1106, 1172, 1181
CviQI	GTAC	3 cut(s)	119, 551, 1097
DdeI	CTNAG	5 cut(s)	234, 257, 388, 616, 738
DpnI	GATC	1 cut(s)	1059
DpnII	GATC	1 cut(s)	1057
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco147I	AGGCCT	1 cut(s)	386
Eco31I	GGTCTC	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	1049
Eco57I	CTGAAG	5 cut(s)	264, 459, 557, 585, 846
EcoRI	GAATTC	1 cut(s)	742
FaeI	CATG	5 cut(s)	287, 694, 1109, 1175, 1184
FalI	AAGNNNNNCTT	4 cut(s)	599, 631, 770, 802
FaqI	GGGAC	1 cut(s)	1035
FatI	CATG	5 cut(s)	283, 690, 1105, 1171, 1180
Fnu4HI	GCNGC	7 cut(s)	225, 228, 231, 267, 546, 665, 1065
FokI	GGATG	6 cut(s)	23, 119, 320, 365, 377, 1140
Fsp4HI	GCNGC	7 cut(s)	225, 228, 231, 267, 546, 665, 1065
FspBI	CTAG	4 cut(s)	252, 314, 452, 648
GluI	GCNGC	7 cut(s)	225, 228, 231, 267, 546, 665, 1065
GsuI	CTGGAG	1 cut(s)	858
HaeIII	GGCC	2 cut(s)	386, 822
HapII	CCGG	1 cut(s)	20
Hin1II	CATG	5 cut(s)	287, 694, 1109, 1175, 1184
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HindIII	AAGCTT	2 cut(s)	299, 491
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	2 cut(s)	454, 878
Hpy166II	GTNNAC	1 cut(s)	402
Hpy188I	TCNGA	6 cut(s)	90, 191, 244, 478, 802, 1162
Hpy188III	TCNNGA	7 cut(s)	305, 575, 594, 603, 641, 875, 945
Hpy8I	GTNNAC	1 cut(s)	402
HpyAV	CCTTC	7 cut(s)	124, 407, 463, 581, 925, 1013, 1167
HpyCH4III	ACNGT	1 cut(s)	123
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	6 cut(s)	4, 311, 667, 1000, 1209, 1255
HpyF10VI	GCNNNNNNNGC	9 cut(s)	20, 29, 230, 545, 670, 716, 783, 853, 997
HpyF3I	CTNAG	5 cut(s)	234, 257, 388, 616, 738
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	5 cut(s)	287, 694, 1109, 1175, 1184
Kzo9I	GATC	1 cut(s)	1057
LmnI	GCTCC	3 cut(s)	77, 877, 947
Lsp1109I	GCAGC	6 cut(s)	211, 214, 217, 278, 651, 1051
LweI	GCATC	5 cut(s)	298, 355, 472, 676, 859
MaeI	CTAG	4 cut(s)	252, 314, 452, 648
MaeII	ACGT	1 cut(s)	331
MalI	GATC	1 cut(s)	1059
MbiI	CCGCTC	1 cut(s)	545
MboI	GATC	1 cut(s)	1057
MboII	GAAGA	5 cut(s)	257, 307, 457, 491, 632
MfeI	CAATTG	2 cut(s)	158, 1224
MhlI	GDGCHC	1 cut(s)	721
MlyI	GAGTC	4 cut(s)	249, 397, 944, 1002
MmeI	TCCRAC	2 cut(s)	144, 1165
MroXI	GAANNNNTTC	1 cut(s)	1167
MseI	TTAA	4 cut(s)	422, 465, 1200, 1288
MspCI	CTTAAG	1 cut(s)	464
MspI	CCGG	1 cut(s)	20
MunI	CAATTG	2 cut(s)	158, 1224
MvnI	CGCG	2 cut(s)	595, 909
MwoI	GCNNNNNNNGC	9 cut(s)	20, 29, 230, 545, 670, 716, 783, 853, 997
NdeII	GATC	1 cut(s)	1057
NheI	GCTAGC	1 cut(s)	451
NlaIII	CATG	5 cut(s)	287, 694, 1109, 1175, 1184
NlaIV	GGNNCC	1 cut(s)	1051
NruI	TCGCGA	1 cut(s)	595
NspI	RCATGY	1 cut(s)	287
PceI	AGGCCT	1 cut(s)	386
PciI	ACATGT	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	1167
PfeI	GAWTC	6 cut(s)	175, 317, 654, 850, 895, 1163
PkrI	GCNGC	7 cut(s)	226, 229, 232, 268, 547, 666, 1066
PleI	GAGTC	4 cut(s)	249, 397, 943, 1001
PpsI	GAGTC	4 cut(s)	249, 397, 943, 1001
PscI	ACATGT	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	1051
PspPI	GGNCC	2 cut(s)	821, 1049
RruI	TCGCGA	1 cut(s)	595
RsaI	GTAC	3 cut(s)	120, 552, 1098
RsaNI	GTAC	3 cut(s)	119, 551, 1097
SaqAI	TTAA	4 cut(s)	422, 465, 1200, 1288
SatI	GCNGC	7 cut(s)	225, 228, 231, 267, 546, 665, 1065
Sau3AI	GATC	1 cut(s)	1057
Sau96I	GGNCC	2 cut(s)	821, 1049
SchI	GAGTC	4 cut(s)	249, 397, 944, 1002
SduI	GDGCHC	1 cut(s)	721
SfaNI	GCATC	5 cut(s)	298, 355, 472, 676, 859
SinI	GGWCC	1 cut(s)	1049
SmlI	CTYRAG	2 cut(s)	464, 918
SmoI	CTYRAG	2 cut(s)	464, 918
SseBI	AGGCCT	1 cut(s)	386
SsiI	CCGC	3 cut(s)	23, 545, 847
SspMI	CTAG	4 cut(s)	252, 314, 452, 648
StuI	AGGCCT	1 cut(s)	386
TaaI	ACNGT	1 cut(s)	123
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	2 cut(s)	125, 706
TaqII	GACCGA	1 cut(s)	126
TatI	WGTACW	1 cut(s)	550
TauI	GCSGC	1 cut(s)	548
TfiI	GAWTC	6 cut(s)	175, 317, 654, 850, 895, 1163
Tru1I	TTAA	4 cut(s)	422, 465, 1200, 1288
Tru9I	TTAA	4 cut(s)	422, 465, 1200, 1288
TseI	GCWGC	6 cut(s)	224, 227, 230, 266, 664, 1064
TspDTI	ATGAA	6 cut(s)	143, 644, 1032, 1154, 1160, 1169
TspGWI	ACGGA	3 cut(s)	175, 743, 1114
Vha464I	CTTAAG	1 cut(s)	464
VpaK11BI	GGWCC	1 cut(s)	1049
XapI	RAATTY	4 cut(s)	206, 457, 742, 795
XceI	RCATGY	1 cut(s)	287
XmnI	GAANNNNTTC	1 cut(s)	1167
XspI	CTAG	4 cut(s)	252, 314, 452, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.