Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005604

Physical Location & Seq

Genomic Coordinates Forward (+)

41505062 .. 41520660

Gene Structure 15599 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00030850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGACGAGGGTAGGCCGTGATTTTGGGGACACCATGCATAAGGATGCCGTTCCAGCAGTTTCAGCTGATGTAACTTTTGCCTCAAGTCGATTTCCTGATTACAAAATTGGACCTAACAATCAGATTGTGGAGGCAAAGCTGGATCAAAAGGTACTTTCAATGAAGGAAGTTGTTGCACGCGAGACAGCACAATTGTTGGAACAGCAGAAACGTCTTTCAGTACGGGACCTTGCCAGTAAATTCGAGAAGGGGTTGGCTGCTGCTGCTAAGTTGTCTGAAGAGGCTAAACTTAGAGAGGCAGCTTCTTTGGAAAAGCATGTCCTTTTGAAGAAGCTTAGAGATGCTCTGGAATCATTAAAAGGACGGGTGGCGGGCAGAAACAAGGATGATGTGGAGGAAGCTATTTCAATGGTGGAGGCTTTAGCAGTTCAGTTGACTCAAAGAGAAGGGGAGTTGATGCAAGAAAAAGCTGAAGTGAAGAAACTAGCAAATTTTCTTAAGCAGGCTTCAGAAGATGCTAAGAAGCTCGTTGATGAAGAAAGAGCTTTTGCTCGTGCTGAAATTGAAAATGCCAAAGCAGCTGTCCAGAGAGTGGAAGAAGCACTTCAGGAGCAAGAACGAACATCACGGGCTTCAGGGAAGCAGGACTTGGAAGAACTGATGAAAGAGGTTCAAGAGGCTAGGCGAATCAAAATGCTGCATCAACCAAGCAAGGTCATGGACATGGAACATGAGCTTCGAGCTTTGAGAGCACAACTCACACAAAAGTCTGAAAATTCTCTTCGCCTTCAGAAAGAGTTGGCAATTAGCAAGAGGAGCTTGGGAAAAAAGTTCTCAACCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0010119 GO:0016043 GO:0030029 GO:0030036 GO:0050789 GO:0050794 GO:0065007 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAB-ABD SCAB-IgPH SCAB_CC

Protein Analysis

281

Amino Acids

31.66

Weight (kDa)

9.15

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCAB-ABD	PF16711	54 - 96	8.9e-25	Actin-binding domain of plant-specific actin-binding protein
SCAB_CC	PF16712	100 - 267	4.1e-83	Coiled-coil regions of plant-specific actin-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26770 AT2G26770 AT2G26770
fragaria_vesca	FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660
malus_domestica	MD03G1156800.v1.1
prunus_persica	Prupe.4G270000_v2.0.a1 Prupe.4G270000_v2.0.a1
pyrus_communis	pycom5153684g00130
rosa_chinensis	RchiOBHm_Chr5g0050171
rosa_laevigata	RLG00000034689
rosa_multiflora	Rmu_sc0002159.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030850
rosa_rugosa	Rorug05G0259100 Rorug05G0259200
rosa_samantha	Rh5AG330900 Rh5BG341600 Rh5CG368100 Rh5DG354400
rosa_wichuraiana	Rw5G031270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	592
AccII	CGCG	1 cut(s)	180
AciI	CCGC	1 cut(s)	371
AclWI	GGATC	1 cut(s)	150
AcsI	RAATTY	3 cut(s)	239, 490, 775
AcuI	CTGAAG	6 cut(s)	297, 492, 492, 590, 618, 773
AfaI	GTAC	2 cut(s)	153, 222
AfiI	CCNNNNNNNGG	1 cut(s)	592
AflII	CTTAAG	1 cut(s)	497
AgsI	TTSAA	5 cut(s)	159, 328, 408, 566, 674
AjuI	GAANNNNNNNTTGG	2 cut(s)	632, 664
Alw21I	GWGCWC	1 cut(s)	754
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	150
AoxI	GGCC	1 cut(s)	13
ApeKI	GCWGC	6 cut(s)	257, 260, 263, 299, 578, 697
ApoI	RAATTY	3 cut(s)	239, 490, 775
ArsI	GACNNNNNNTTYG	2 cut(s)	567, 599
Asp700I	GAANNNNTTC	1 cut(s)	603
AspS9I	GGNCC	2 cut(s)	110, 226
AvaII	GGWCC	2 cut(s)	110, 226
BauI	CACGAG	1 cut(s)	552
Bbv12I	GWGCWC	1 cut(s)	754
BbvI	GCAGC	6 cut(s)	244, 247, 250, 311, 590, 684
BceAI	ACGGC	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	2 cut(s)	485, 681
BfrI	CTTAAG	1 cut(s)	497
BisI	GCNGC	6 cut(s)	258, 261, 264, 300, 579, 698
BlsI	GCNGC	6 cut(s)	259, 262, 265, 301, 580, 699
Bme18I	GGWCC	2 cut(s)	110, 226
BmgT120I	GGNCC	2 cut(s)	110, 226
BmiI	GGNNCC	1 cut(s)	227
BmsI	GCATC	5 cut(s)	34, 331, 447, 505, 709
BplI	GAGNNNNNCTC	2 cut(s)	741, 773
BpuEI	CTTGAG	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	1 cut(s)	592
Bse1I	ACTGG	1 cut(s)	234
BseGI	GGATG	2 cut(s)	49, 391
BseLI	CCNNNNNNNGG	1 cut(s)	592
BseNI	ACTGG	1 cut(s)	234
BseRI	GAGGAG	1 cut(s)	829
BseXI	GCAGC	6 cut(s)	244, 247, 250, 311, 590, 684
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	754
BslFI	GGGAC	2 cut(s)	41, 239
BslI	CCNNNNNNNGG	1 cut(s)	592
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	2 cut(s)	41, 239
BsnI	GGCC	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	754
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	1 cut(s)	371
BspANI	GGCC	1 cut(s)	15
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	227
BspPI	GGATC	1 cut(s)	150
BspTI	CTTAAG	1 cut(s)	497
BsrI	ACTGG	1 cut(s)	234
BssMI	GATC	1 cut(s)	142
BssSI	CACGAG	1 cut(s)	552
Bst2BI	CACGAG	1 cut(s)	552
Bst6I	CTCTTC	2 cut(s)	273, 786
BstAFI	CTTAAG	1 cut(s)	497
BstC8I	GCNNGC	3 cut(s)	178, 373, 504
BstDEI	CTNAG	4 cut(s)	267, 290, 335, 519
BstF5I	GGATG	2 cut(s)	49, 391
BstFNI	CGCG	1 cut(s)	180
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	6 cut(s)	53, 62, 263, 578, 749, 816
BstNSI	RCATGY	1 cut(s)	320
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	6 cut(s)	244, 247, 250, 311, 590, 684
BsuRI	GGCC	1 cut(s)	15
BtsCI	GGATG	2 cut(s)	49, 391
Cac8I	GCNNGC	3 cut(s)	178, 373, 504
Cfr13I	GGNCC	2 cut(s)	110, 226
Csp6I	GTAC	2 cut(s)	152, 221
CviAII	CATG	5 cut(s)	34, 317, 718, 724, 731
CviQI	GTAC	2 cut(s)	152, 221
DdeI	CTNAG	4 cut(s)	267, 290, 335, 519
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Eam1104I	CTCTTC	2 cut(s)	273, 786
EarI	CTCTTC	2 cut(s)	273, 786
Eco47I	GGWCC	2 cut(s)	110, 226
Eco57I	CTGAAG	6 cut(s)	297, 492, 492, 590, 618, 773
EcoO109I	RGGNCCY	1 cut(s)	226
EcoT22I	ATGCAT	1 cut(s)	39
FaeI	CATG	5 cut(s)	37, 320, 721, 727, 734
FaiI	YATR	8 cut(s)	35, 39, 318, 719, 725, 732, 842, 844
FalI	AAGNNNNNCTT	6 cut(s)	588, 620, 632, 664, 803, 835
FaqI	GGGAC	2 cut(s)	41, 239
FatI	CATG	5 cut(s)	33, 316, 717, 723, 730
FauI	CCCGC	1 cut(s)	364
FauNDI	CATATG	1 cut(s)	842
Fnu4HI	GCNGC	6 cut(s)	258, 261, 264, 300, 579, 698
FokI	GGATG	2 cut(s)	56, 398
Fsp4HI	GCNGC	6 cut(s)	258, 261, 264, 300, 579, 698
FspBI	CTAG	2 cut(s)	485, 681
GluI	GCNGC	6 cut(s)	258, 261, 264, 300, 579, 698
HaeIII	GGCC	1 cut(s)	15
Hin1II	CATG	5 cut(s)	37, 320, 721, 727, 734
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	3 cut(s)	350, 436, 687
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188I	TCNGA	5 cut(s)	123, 277, 511, 772, 792
Hpy188III	TCNNGA	6 cut(s)	95, 244, 347, 586, 608, 674
Hpy8I	GTNNAC	1 cut(s)	435
HpyAV	CCTTC	4 cut(s)	157, 241, 440, 797
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	4 cut(s)	37, 176, 460, 700
HpyF10VI	GCNNNNNNNGC	6 cut(s)	53, 62, 263, 578, 749, 816
HpyF3I	CTNAG	4 cut(s)	267, 290, 335, 519
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	5 cut(s)	37, 320, 721, 727, 734
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	2 cut(s)	610, 816
Lsp1109I	GCAGC	6 cut(s)	244, 247, 250, 311, 590, 684
LweI	GCATC	5 cut(s)	34, 331, 447, 505, 709
MaeI	CTAG	2 cut(s)	485, 681
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	8 cut(s)	290, 340, 490, 524, 548, 608, 665, 773
MfeI	CAATTG	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	754
MluCI	AATT	7 cut(s)	105, 191, 239, 490, 561, 775, 804
MlyI	GAGTC	1 cut(s)	430
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	9 cut(s)	91, 124, 274, 289, 388, 409, 661, 670, 807
Mph1103I	ATGCAT	1 cut(s)	39
MroXI	GAANNNNTTC	1 cut(s)	603
MseI	TTAA	2 cut(s)	356, 498
MslI	CAYNNNNRTG	2 cut(s)	42, 722
MspA1I	CMGCKG	2 cut(s)	65, 581
MspCI	CTTAAG	1 cut(s)	497
MunI	CAATTG	1 cut(s)	191
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	6 cut(s)	53, 62, 263, 578, 749, 816
NdeI	CATATG	1 cut(s)	842
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	5 cut(s)	37, 320, 721, 727, 734
NlaIV	GGNNCC	1 cut(s)	227
NsiI	ATGCAT	1 cut(s)	39
NspI	RCATGY	1 cut(s)	320
PdmI	GAANNNNTTC	1 cut(s)	603
PfeI	GAWTC	2 cut(s)	350, 687
PflMI	CCANNNNNTGG	1 cut(s)	592
PkrI	GCNGC	6 cut(s)	259, 262, 265, 301, 580, 699
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
PpuMI	RGGWCCY	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	227
PspPI	GGNCC	2 cut(s)	110, 226
PspPPI	RGGWCCY	1 cut(s)	226
PvuII	CAGCTG	2 cut(s)	65, 581
RsaI	GTAC	2 cut(s)	153, 222
RsaNI	GTAC	2 cut(s)	152, 221
RseI	CAYNNNNRTG	2 cut(s)	42, 722
SaqAI	TTAA	2 cut(s)	356, 498
SatI	GCNGC	6 cut(s)	258, 261, 264, 300, 579, 698
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	2 cut(s)	110, 226
SchI	GAGTC	1 cut(s)	430
SduI	GDGCHC	1 cut(s)	754
SfaNI	GCATC	5 cut(s)	34, 331, 447, 505, 709
SinI	GGWCC	2 cut(s)	110, 226
SmiMI	CAYNNNNRTG	2 cut(s)	42, 722
SmlI	CTYRAG	2 cut(s)	82, 497
SmoI	CTYRAG	2 cut(s)	82, 497
Sse9I	AATT	7 cut(s)	105, 191, 239, 490, 561, 775, 804
SsiI	CCGC	1 cut(s)	371
SspMI	CTAG	2 cut(s)	485, 681
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	3 cut(s)	88, 243, 739
TasI	AATT	7 cut(s)	105, 191, 239, 490, 561, 775, 804
TfiI	GAWTC	2 cut(s)	350, 687
Tru1I	TTAA	2 cut(s)	356, 498
Tru9I	TTAA	2 cut(s)	356, 498
TseI	GCWGC	6 cut(s)	257, 260, 263, 299, 578, 697
TspDTI	ATGAA	3 cut(s)	176, 549, 677
Van91I	CCANNNNNTGG	1 cut(s)	592
Vha464I	CTTAAG	1 cut(s)	497
VpaK11BI	GGWCC	2 cut(s)	110, 226
XapI	RAATTY	3 cut(s)	239, 490, 775
XceI	RCATGY	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	603
XspI	CTAG	2 cut(s)	485, 681
Zsp2I	ATGCAT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.