Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005604

Physical Location & Seq

Genomic Coordinates Reverse (-)

21585261 .. 21598071

Gene Structure 12811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G270000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGACGAGGGTGGGTCGAGATTTTGGGGATACAATGCAAAAGGATGCCGTTCCGGCTGTGTCTGCTGACGTAATTTTTTCCTCAAGTCGATTTCCTATTTACAAAATTGGAGCTAACAATCAGATTGTGGAGGCAAAGGATGAGCAAAAGGTACTATCAATGAAGGAAGTTGTTGCACGTGAGACAGCACAATTGTTGGAACAGCAAAAACGCCTTTCAGTCCGTGACCTTGCCAGTAAATTCGAGAAAGGGTTGGCTGCTGCTGCTAAGTTGTCTGAAGAGGCTAGACTTAGGGAGGCAGCTTCTTTGGAGAAACATGTCCTTTTGAAGAAGCTTCGGGATGCACTGGAATCATTAAAAGGACGTGTGGCTGGTAGAAACAAGGATGATGTAGAGGATGCCATTTCAATGGTGGAGGCTTTAGCAGTTCAGTTGACTCAAAGAGAAGGGGAGTTAATTCAAGAAAAAGCAGAGGTGAAGAAGCTAGCAAATTTTCTTAAGCAGGCTTCAGAAGATGCTAAAAAACTTGTCGATGAGGAAAGAGCTTTTGCTCGTGCTGAAATTGAAAATGCCAGAGCAGCAGTACAGAGAGTGGAAGAAGCCCTTCAGGAACAAGAACAAATGTCGCGAGCTTCTGGGAAGCAGGACTTGGAAGAATTAATGAAAGAGGTCCAAGAGGCTAGACGAATCAAAATGCTGCATCAGCCAAGCAAGGTTATGGACATGGAACATGAACTTCGAGCATTGAGGGCACAGCTCACAGAGAAGTCTAAGAATTCTGTTCGACTTCAGAAAGAGCTGGCAATGAGTAAGAGGGGCTTGGAACAAAATTCCCAACTATATGAATTAGATGGCCCTGAAGCCTTAGGTTCATATTTGCGAATTCAACCTTGCTCTGATGATGCTCCAGAACTTTCCAAGTGTTCGATTCAATGGTATCGTGTATCATCTCAAGGTGGCAAGAAGGAGCTTATATCAGGTGCTATAAAATCAGTTTATGCCCCAGAGCCTTTCGATGTTGGGCGAATCTTGCAAGCCGATATTATTTTGGAAGGCCAGTGGCTAACGTTGACAACCGCTGGTCCCATTGATCCTGCTGCTGGTTTGGGAAGCTATGTGGAGGCACTTGTGCGGAAGCATGATATTGAGTTCAATGTAGTTATTACCCAAATGAATGGGGTCAATCATCCCTCAGAATCTATTCATGTATTTCATGTTGGAAAGATGAGGATTAAACTTTGCAAGGGAAAAACAACAATTGCTAAAGAATACTTTTCTACTTCGATGCAGCTATGTGGAGTTAGAGGAGGTGGGAATGCTGCAGCTCAGGCATTGTTTTGGCAAGCAAAACAAGGACTTTCCTTTGTATTGGCATTTGAATCAGAACGAGAGAGGAATGCGGCCATCATGCTTGCCCGGAGATTTGCTTTCGATTGTAATATCATGCTAGCTGGGCCGGACGACAGAGCTCCCTTAGAAACTAACGGAGCCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0010119 GO:0016043 GO:0030029 GO:0030036 GO:0050789 GO:0050794 GO:0065007 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAB-ABD SCAB-IgPH SCAB_CC

Protein Analysis

499

Amino Acids

55.35

Weight (kDa)

7.08

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26770 AT2G26770 AT2G26770
fragaria_vesca	FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660
malus_domestica	MD03G1156800.v1.1
prunus_persica	Prupe.4G270000_v2.0.a1 Prupe.4G270000_v2.0.a1
pyrus_communis	pycom5153684g00130
rosa_chinensis	RchiOBHm_Chr5g0050171
rosa_laevigata	RLG00000034689
rosa_multiflora	Rmu_sc0002159.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030850
rosa_rugosa	Rorug05G0259100 Rorug05G0259200
rosa_samantha	Rh5AG330900 Rh5BG341600 Rh5CG368100 Rh5DG354400
rosa_wichuraiana	Rw5G031270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	628
AciI	CCGC	3 cut(s)	1077, 1132, 1400
AclI	AACGTT	1 cut(s)	1067
AclWI	GGATC	1 cut(s)	1085
AcoI	YGGCCR	1 cut(s)	1401
AcsI	RAATTY	5 cut(s)	239, 490, 775, 829, 882
AcuI	CTGAAG	5 cut(s)	297, 492, 590, 773, 879
AcvI	CACGTG	1 cut(s)	179
AfaI	GTAC	2 cut(s)	153, 585
AfiI	CCNNNNNNNGG	1 cut(s)	1100
AflII	CTTAAG	1 cut(s)	497
AflIII	ACRYGT	2 cut(s)	316, 364
AgsI	TTSAA	8 cut(s)	328, 408, 461, 566, 887, 932, 1153, 1379
AjiI	CACGTC	1 cut(s)	365
AjuI	GAANNNNNNNTTGG	2 cut(s)	632, 664
Alw21I	GWGCWC	1 cut(s)	1471
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	1085
AoxI	GGCC	4 cut(s)	853, 1054, 1401, 1454
ApoI	RAATTY	5 cut(s)	239, 490, 775, 829, 882
AseI	ATTAAT	1 cut(s)	659
Asp700I	GAANNNNTTC	2 cut(s)	603, 1200
AspS9I	GGNCC	4 cut(s)	670, 854, 1082, 1454
AsuC2I	CCSGG	1 cut(s)	1417
AsuHPI	GGTGA	1 cut(s)	487
AsuNHI	GCTAGC	2 cut(s)	484, 1447
AvaII	GGWCC	2 cut(s)	670, 1082
AxyI	CCTNAGG	1 cut(s)	865
BaeGI	GKGCMC	1 cut(s)	754
BanII	GRGCYC	2 cut(s)	1471, 1492
BauI	CACGAG	1 cut(s)	552
BbrPI	CACGTG	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	1471
BccI	CCATC	2 cut(s)	845, 1412
BceAI	ACGGC	1 cut(s)	32
BciVI	GTATCC	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	1417
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	4 cut(s)	285, 485, 681, 1448
BfmI	CTRYAG	1 cut(s)	1320
BfrI	CTTAAG	1 cut(s)	497
BfuI	GTATCC	1 cut(s)	22
BglI	GCCNNNNNGGC	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	1417
Bme18I	GGWCC	2 cut(s)	670, 1082
BmgBI	CACGTC	1 cut(s)	365
BmgT120I	GGNCC	4 cut(s)	670, 854, 1082, 1454
BmiI	GGNNCC	2 cut(s)	1084, 1489
BmrFI	CCNGG	1 cut(s)	1417
BmsI	GCATC	7 cut(s)	34, 331, 388, 505, 709, 892, 1275
BmtI	GCTAGC	2 cut(s)	488, 1451
BpmI	CTGGAG	1 cut(s)	891
Bpu10I	CCTNAGC	1 cut(s)	1326
BpuEI	CTTGAG	2 cut(s)	67, 936
BpuMI	CCSGG	1 cut(s)	1417
BsaAI	YACGTR	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	1 cut(s)	1100
Bse1I	ACTGG	3 cut(s)	234, 351, 1057
Bse21I	CCTNAGG	1 cut(s)	865
Bse3DI	GCAATG	1 cut(s)	810
BseGI	GGATG	6 cut(s)	49, 145, 346, 391, 403, 1186
BseLI	CCNNNNNNNGG	1 cut(s)	1100
BseMI	GCAATG	1 cut(s)	810
BseMII	CTCAG	2 cut(s)	1206, 1340
BseNI	ACTGG	3 cut(s)	234, 351, 1057
BseRI	GAGGAG	1 cut(s)	1320
BseSI	GKGCMC	1 cut(s)	754
BseYI	CCCAGC	1 cut(s)	1451
Bsh1236I	CGCG	1 cut(s)	628
BshFI	GGCC	4 cut(s)	855, 1056, 1403, 1456
BsiHKAI	GWGCWC	1 cut(s)	1471
BsiSI	CCGG	3 cut(s)	53, 1417, 1457
BslFI	GGGAC	1 cut(s)	1068
BslI	CCNNNNNNNGG	1 cut(s)	1100
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	1068
BsmI	GAATGC	2 cut(s)	1321, 1402
BsnI	GGCC	4 cut(s)	855, 1056, 1403, 1456
Bsp1286I	GDGCHC	3 cut(s)	754, 1471, 1492
Bsp143I	GATC	1 cut(s)	1090
Bsp68I	TCGCGA	1 cut(s)	628
BspACI	CCGC	3 cut(s)	1077, 1132, 1400
BspANI	GGCC	4 cut(s)	855, 1056, 1403, 1456
BspCNI	CTCAG	2 cut(s)	1205, 1339
BspFNI	CGCG	1 cut(s)	628
BspLI	GGNNCC	2 cut(s)	1084, 1489
BspMAI	CTGCAG	1 cut(s)	1324
BspOI	GCTAGC	2 cut(s)	488, 1451
BspPI	GGATC	1 cut(s)	1085
BspTI	CTTAAG	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	810
BsrI	ACTGG	3 cut(s)	234, 351, 1057
BssMI	GATC	1 cut(s)	1090
BssSI	CACGAG	1 cut(s)	552
Bst2BI	CACGAG	1 cut(s)	552
Bst6I	CTCTTC	1 cut(s)	273
BstAFI	CTTAAG	1 cut(s)	497
BstBAI	YACGTR	1 cut(s)	179
BstC8I	GCNNGC	8 cut(s)	486, 504, 630, 801, 1035, 1344, 1413, 1449
BstDEI	CTNAG	7 cut(s)	267, 290, 771, 865, 1192, 1326, 1474
BstF5I	GGATG	6 cut(s)	49, 145, 346, 391, 403, 1186
BstFNI	CGCG	1 cut(s)	628
BstKTI	GATC	1 cut(s)	1093
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	1090
BstMWI	GCNNNNNNNGC	9 cut(s)	53, 62, 263, 578, 703, 749, 1030, 1328, 1453
BstNSI	RCATGY	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	1415
BstSFI	CTRYAG	1 cut(s)	1320
BstSLI	GKGCMC	1 cut(s)	754
BstUI	CGCG	1 cut(s)	628
BstXI	CCANNNNNNTGG	2 cut(s)	409, 1175
Bsu36I	CCTNAGG	1 cut(s)	865
BsuI	GTATCC	1 cut(s)	22
BsuRI	GGCC	4 cut(s)	855, 1056, 1403, 1456
BtrI	CACGTC	1 cut(s)	365
BtsCI	GGATG	6 cut(s)	49, 145, 346, 391, 403, 1186
BtsIMutI	CAGTG	2 cut(s)	344, 1064
BtuMI	TCGCGA	1 cut(s)	628
Cac8I	GCNNGC	8 cut(s)	486, 504, 630, 801, 1035, 1344, 1413, 1449
Cfr13I	GGNCC	4 cut(s)	670, 854, 1082, 1454
Csp6I	GTAC	2 cut(s)	152, 584
CviAII	CATG	8 cut(s)	317, 724, 731, 1139, 1205, 1214, 1408, 1444
CviQI	GTAC	2 cut(s)	152, 584
DdeI	CTNAG	7 cut(s)	267, 290, 771, 865, 1192, 1326, 1474
DpnI	GATC	1 cut(s)	1092
DpnII	GATC	1 cut(s)	1090
EaeI	YGGCCR	1 cut(s)	1401
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Ecl136II	GAGCTC	1 cut(s)	1469
Eco24I	GRGCYC	2 cut(s)	1471, 1492
Eco47I	GGWCC	2 cut(s)	670, 1082
Eco53kI	GAGCTC	1 cut(s)	1469
Eco57I	CTGAAG	5 cut(s)	297, 492, 590, 773, 879
Eco72I	CACGTG	1 cut(s)	179
Eco81I	CCTNAGG	1 cut(s)	865
EcoICRI	GAGCTC	1 cut(s)	1469
EcoRI	GAATTC	2 cut(s)	775, 882
EcoT38I	GRGCYC	2 cut(s)	1471, 1492
FaeI	CATG	8 cut(s)	320, 727, 734, 1142, 1208, 1217, 1411, 1447
FalI	AAGNNNNNCTT	6 cut(s)	588, 620, 632, 664, 803, 835
FaqI	GGGAC	1 cut(s)	1068
FatI	CATG	8 cut(s)	316, 723, 730, 1138, 1204, 1213, 1407, 1443
FokI	GGATG	6 cut(s)	56, 152, 353, 398, 410, 1173
FriOI	GRGCYC	2 cut(s)	1471, 1492
FspBI	CTAG	4 cut(s)	285, 485, 681, 1448
GsaI	CCCAGC	1 cut(s)	1455
GsuI	CTGGAG	1 cut(s)	891
HaeIII	GGCC	4 cut(s)	855, 1056, 1403, 1456
HapII	CCGG	3 cut(s)	53, 1417, 1457
Hin1II	CATG	8 cut(s)	320, 727, 734, 1142, 1208, 1217, 1411, 1447
HincII	GTYRAC	2 cut(s)	435, 1071
HindII	GTYRAC	2 cut(s)	435, 1071
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	7 cut(s)	350, 436, 687, 928, 1026, 1196, 1379
HpaII	CCGG	3 cut(s)	53, 1417, 1457
HphI	GGTGA	1 cut(s)	487
Hpy166II	GTNNAC	2 cut(s)	435, 1071
Hpy188I	TCNGA	7 cut(s)	123, 277, 511, 792, 898, 1195, 1384
Hpy188III	TCNNGA	7 cut(s)	17, 244, 338, 461, 608, 627, 908
Hpy8I	GTNNAC	2 cut(s)	435, 1071
HpyAV	CCTTC	5 cut(s)	157, 440, 614, 958, 1046
HpyCH4IV	ACGT	4 cut(s)	69, 178, 364, 1067
HpyCH4V	TGCA	8 cut(s)	37, 176, 344, 700, 1033, 1242, 1288, 1322
HpyF10VI	GCNNNNNNNGC	9 cut(s)	53, 62, 263, 578, 703, 749, 1030, 1328, 1453
HpyF3I	CTNAG	7 cut(s)	267, 290, 771, 865, 1192, 1326, 1474
HpySE526I	ACGT	4 cut(s)	69, 178, 364, 1067
Hsp92II	CATG	8 cut(s)	320, 727, 734, 1142, 1208, 1217, 1411, 1447
Kzo9I	GATC	1 cut(s)	1090
LmnI	GCTCC	5 cut(s)	110, 910, 967, 1474, 1487
LweI	GCATC	7 cut(s)	34, 331, 388, 505, 709, 892, 1275
MaeI	CTAG	4 cut(s)	285, 485, 681, 1448
MaeII	ACGT	4 cut(s)	69, 178, 364, 1067
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	1 cut(s)	1092
MboI	GATC	1 cut(s)	1090
MboII	GAAGA	6 cut(s)	290, 340, 490, 524, 608, 665
MfeI	CAATTG	2 cut(s)	191, 1257
MhlI	GDGCHC	3 cut(s)	754, 1471, 1492
MlyI	GAGTC	1 cut(s)	430
MmeI	TCCRAC	2 cut(s)	177, 1198
MroXI	GAANNNNTTC	2 cut(s)	603, 1200
MseI	TTAA	5 cut(s)	356, 455, 498, 659, 1233
MslI	CAYNNNNRTG	1 cut(s)	407
MspA1I	CMGCKG	1 cut(s)	1079
MspCI	CTTAAG	1 cut(s)	497
MspI	CCGG	3 cut(s)	53, 1417, 1457
MspR9I	CCNGG	1 cut(s)	1417
MunI	CAATTG	2 cut(s)	191, 1257
Mva1269I	GAATGC	2 cut(s)	1321, 1402
MvnI	CGCG	1 cut(s)	628
MwoI	GCNNNNNNNGC	9 cut(s)	53, 62, 263, 578, 703, 749, 1030, 1328, 1453
NciI	CCSGG	1 cut(s)	1417
NdeII	GATC	1 cut(s)	1090
NheI	GCTAGC	2 cut(s)	484, 1447
NlaIII	CATG	8 cut(s)	320, 727, 734, 1142, 1208, 1217, 1411, 1447
NlaIV	GGNNCC	2 cut(s)	1084, 1489
NmuCI	GTSAC	1 cut(s)	224
NruI	TCGCGA	1 cut(s)	628
NspI	RCATGY	1 cut(s)	320
PciI	ACATGT	1 cut(s)	316
PctI	GAATGC	2 cut(s)	1321, 1402
PdmI	GAANNNNTTC	2 cut(s)	603, 1200
PfeI	GAWTC	6 cut(s)	350, 687, 928, 1026, 1196, 1379
PleI	GAGTC	1 cut(s)	430
PmaCI	CACGTG	1 cut(s)	179
PmlI	CACGTG	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	430
Ppu21I	YACGTR	1 cut(s)	179
PscI	ACATGT	1 cut(s)	316
PshBI	ATTAAT	1 cut(s)	659
Psp124BI	GAGCTC	1 cut(s)	1471
Psp1406I	AACGTT	1 cut(s)	1067
PspCI	CACGTG	1 cut(s)	179
PspFI	CCCAGC	1 cut(s)	1451
PspN4I	GGNNCC	2 cut(s)	1084, 1489
PspPI	GGNCC	4 cut(s)	670, 854, 1082, 1454
PstI	CTGCAG	1 cut(s)	1324
RruI	TCGCGA	1 cut(s)	628
RsaI	GTAC	2 cut(s)	153, 585
RsaNI	GTAC	2 cut(s)	152, 584
RseI	CAYNNNNRTG	1 cut(s)	407
SacI	GAGCTC	1 cut(s)	1471
SaqAI	TTAA	5 cut(s)	356, 455, 498, 659, 1233
Sau3AI	GATC	1 cut(s)	1090
Sau96I	GGNCC	4 cut(s)	670, 854, 1082, 1454
SchI	GAGTC	1 cut(s)	430
ScrFI	CCNGG	1 cut(s)	1417
SduI	GDGCHC	3 cut(s)	754, 1471, 1492
SfaNI	GCATC	7 cut(s)	34, 331, 388, 505, 709, 892, 1275
SfcI	CTRYAG	1 cut(s)	1320
SinI	GGWCC	2 cut(s)	670, 1082
SmiMI	CAYNNNNRTG	1 cut(s)	407
SmlI	CTYRAG	3 cut(s)	82, 497, 951
SmoI	CTYRAG	3 cut(s)	82, 497, 951
SsiI	CCGC	3 cut(s)	1077, 1132, 1400
SspMI	CTAG	4 cut(s)	285, 485, 681, 1448
SstI	GAGCTC	1 cut(s)	1471
StyD4I	CCNGG	1 cut(s)	1415
TaiI	ACGT	4 cut(s)	72, 181, 367, 1070
TatI	WGTACW	1 cut(s)	583
TauI	GCSGC	1 cut(s)	1403
TfiI	GAWTC	6 cut(s)	350, 687, 928, 1026, 1196, 1379
Tru1I	TTAA	5 cut(s)	356, 455, 498, 659, 1233
Tru9I	TTAA	5 cut(s)	356, 455, 498, 659, 1233
TscAI	CASTG	2 cut(s)	351, 1064
TseFI	GTSAC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	8 cut(s)	176, 677, 747, 858, 861, 1187, 1193, 1202
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	2 cut(s)	351, 1064
Vha464I	CTTAAG	1 cut(s)	497
VpaK11BI	GGWCC	2 cut(s)	670, 1082
VspI	ATTAAT	1 cut(s)	659
XapI	RAATTY	5 cut(s)	239, 490, 775, 829, 882
XceI	RCATGY	1 cut(s)	320
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XmnI	GAANNNNTTC	2 cut(s)	603, 1200
XspI	CTAG	4 cut(s)	285, 485, 681, 1448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.