Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002159.1

Orthogroup ID

OG0005604

Physical Location & Seq

Genomic Coordinates Forward (+)

41028 .. 54003

Gene Structure 12976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002159.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1764 bp

atgggaagaccggtgccggcggtgttaagggaccatactggttcatggaattctggtttcatcgcacgcctaggctgtggttctgttctggaagctgaagcttggggtttgctgctatttttgaagatagctttttctctgcattgtcatcatatcttggttgaaattgattcagagattttagttactttggtcaatcaaggagtgcatgacttacatctttcaaaaattatcattgactattgtgaatccattcaaagacataagttggaaggagaaatgacgagggcaggccgtgattttggggacactatgcataaggatgccgttccagcagtttcagctgatgtaacttttgcctcaagtcgatttcctgattacaaaattggacctaacaatcagattgtggagacaaagctggatcaaaaggtactttcaatgaaggaagttgttgcacgcgagacagcacaattgttggaacagcagaaacgtctttcagttcgggaccttgccagtaaattcgagaaggggttggctgctgctgctaagttgtctgaagaggctaaacttagagaggcagcttctttggaaaagcatgtccttttgaagaagcttagagatgctctggaatcattaaaaggacgggtggcgggcagaaacaaggatgatgtggaggcagctatttcaatggtggaggctttagcagttcagttgactcaaagagaaggggagttgatgcaagaaaaagctgaagtgaagaaactagcaaattttcttaagcaggcttcagaagatgctaagaagctcgttgatgaagaaagagcttttgctcgtgctgaaattgaaaatgccaaagcagctgtccagagagtggaagaagctcttcaggagcaagaacgaacatcacgggcatcagggaagcaggacttggaagaactgatgaaagaggttcaagaggctaggcgaatcaaaatgctgcatcaaccaagcaaggtcatggacatggaacacgagcttcgagctttgagagcacaactcacacaaaagtctgaaaattctcttcgccttcagaaagagttggcaattagcaagaggagcttggaaaaaagttctcaaccatatgaactagatggccctgaagctttaggttcatatttgcggattaatcctttgtctgatgatgcaatagaactttctacatgctcaattcaatggtatcgtctatcatctgatggtgccagcaaggagcttatatcaggagcaataaaatcagtatatgccccagagccttttgacgtggggcggttcttgcaggcagatattttatttgatggccaaagactaacactgaccaccgctggtcccattgatcctgctgctggtttgggaagttatgtagaggcacttgtgcggaaacatgatattgagttcaatgtagttattacccaaatgaatggcgttaatcatctgtcagaatctatacatgtatttcatgtgggaaggatgaggattaaactgtgcaagggaaagacaactatttctaaagaatacttttcggcttcaatgcagctgtgcggagttagaggaggtgggaatgctgcagctcaggcattgttttggcaagtcaagcaaggtctttcctttgtattggcatttgaatcagaacgagagaggaatgcggccatcatgcttgcgaggagatttgctttcgattgtaatatcatgctagctgggccagatgacagagcacctttaggaacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0010119 GO:0016043 GO:0030029 GO:0030036 GO:0050789 GO:0050794 GO:0065007 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAB-ABD SCAB-IgPH SCAB_CC

Protein Analysis

587

Amino Acids

65.23

Weight (kDa)

6.6

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26770 AT2G26770 AT2G26770
fragaria_vesca	FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660
malus_domestica	MD03G1156800.v1.1
prunus_persica	Prupe.4G270000_v2.0.a1 Prupe.4G270000_v2.0.a1
pyrus_communis	pycom5153684g00130
rosa_chinensis	RchiOBHm_Chr5g0050171
rosa_laevigata	RLG00000034689
rosa_multiflora	Rmu_sc0002159.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030850
rosa_rugosa	Rorug05G0259100 Rorug05G0259200
rosa_samantha	Rh5AG330900 Rh5BG341600 Rh5CG368100 Rh5DG354400
rosa_wichuraiana	Rw5G031270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	13, 1235
AccB7I	CCANNNNNTGG	1 cut(s)	871
AccII	CGCG	1 cut(s)	459
AciI	CCGC	8 cut(s)	20, 650, 1159, 1303, 1356, 1411, 1575, 1679
AclWI	GGATC	2 cut(s)	429, 1364
AcoI	YGGCCR	2 cut(s)	1333, 1680
AcsI	RAATTY	4 cut(s)	49, 518, 769, 1054
AcuI	CTGAAG	7 cut(s)	117, 576, 771, 771, 869, 1052, 1158
AfaI	GTAC	1 cut(s)	432
AfiI	CCNNNNNNNGG	2 cut(s)	871, 1379
AflII	CTTAAG	1 cut(s)	776
AflIII	ACRYGT	1 cut(s)	1483
AgeI	ACCGGT	1 cut(s)	10
AjiI	CACGTC	1 cut(s)	1297
AjuI	GAANNNNNNNTTGG	2 cut(s)	911, 943
Alw21I	GWGCWC	2 cut(s)	1033, 1750
Alw26I	GTCTC	2 cut(s)	404, 455
AlwI	GGATC	2 cut(s)	429, 1364
AoxI	GGCC	5 cut(s)	292, 1132, 1333, 1680, 1733
ApoI	RAATTY	4 cut(s)	49, 518, 769, 1054
ArsI	GACNNNNNNTTYG	2 cut(s)	846, 878
AseI	ATTAAT	1 cut(s)	1164
AsiGI	ACCGGT	1 cut(s)	10
Asp700I	GAANNNNTTC	2 cut(s)	252, 882
AspA2I	CCTAGG	1 cut(s)	70
AspS9I	GGNCC	6 cut(s)	31, 389, 505, 1133, 1361, 1733
AsuNHI	GCTAGC	1 cut(s)	1726
AvaII	GGWCC	4 cut(s)	31, 389, 505, 1361
AvrII	CCTAGG	1 cut(s)	70
BalI	TGGCCA	1 cut(s)	1335
BanI	GGYRCC	2 cut(s)	13, 1235
BauI	CACGAG	2 cut(s)	831, 1010
BbsI	GAAGAC	1 cut(s)	13
Bbv12I	GWGCWC	2 cut(s)	1033, 1750
BccI	CCATC	4 cut(s)	1124, 1226, 1325, 1691
BceAI	ACGGC	2 cut(s)	279, 311
BcoDI	GTCTC	2 cut(s)	404, 455
BfaI	CTAG	5 cut(s)	71, 764, 960, 1127, 1727
BfmI	CTRYAG	1 cut(s)	1599
BfrI	CTTAAG	1 cut(s)	776
BlnI	CCTAGG	1 cut(s)	70
Bme18I	GGWCC	4 cut(s)	31, 389, 505, 1361
BmgBI	CACGTC	1 cut(s)	1297
BmgT120I	GGNCC	6 cut(s)	31, 389, 505, 1133, 1361, 1733
BmiI	GGNNCC	6 cut(s)	15, 32, 506, 1237, 1363, 1759
BmsI	GCATC	7 cut(s)	313, 610, 726, 784, 920, 988, 1171
BmtI	GCTAGC	1 cut(s)	1730
BpiI	GAAGAC	1 cut(s)	13
BplI	GAGNNNNNCTC	2 cut(s)	1020, 1052
Bpu10I	CCTNAGC	1 cut(s)	1605
BpuEI	CTTGAG	1 cut(s)	346
BsaJI	CCNNGG	1 cut(s)	70
BsaWI	WCCGGW	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	2 cut(s)	871, 1379
Bse118I	RCCGGY	2 cut(s)	10, 16
Bse1I	ACTGG	2 cut(s)	43, 513
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	3 cut(s)	328, 670, 1509
BseLI	CCNNNNNNNGG	2 cut(s)	871, 1379
BseMII	CTCAG	1 cut(s)	1619
BseNI	ACTGG	2 cut(s)	43, 513
BseRI	GAGGAG	3 cut(s)	1108, 1599, 1711
BseYI	CCCAGC	1 cut(s)	1730
Bsh1236I	CGCG	1 cut(s)	459
BshFI	GGCC	5 cut(s)	294, 1134, 1335, 1682, 1735
BshNI	GGYRCC	2 cut(s)	13, 1235
BshTI	ACCGGT	1 cut(s)	10
BsiHKAI	GWGCWC	2 cut(s)	1033, 1750
BsiSI	CCGG	2 cut(s)	11, 17
BslFI	GGGAC	4 cut(s)	44, 320, 518, 1347
BslI	CCNNNNNNNGG	2 cut(s)	871, 1379
BsmAI	GTCTC	2 cut(s)	404, 455
BsmFI	GGGAC	4 cut(s)	44, 320, 518, 1347
BsmI	GAATGC	2 cut(s)	1600, 1681
BsnI	GGCC	5 cut(s)	294, 1134, 1335, 1682, 1735
Bsp1286I	GDGCHC	2 cut(s)	1033, 1750
Bsp143I	GATC	2 cut(s)	421, 1369
BspACI	CCGC	8 cut(s)	20, 650, 1159, 1303, 1356, 1411, 1575, 1679
BspANI	GGCC	5 cut(s)	294, 1134, 1335, 1682, 1735
BspCNI	CTCAG	1 cut(s)	1618
BspFNI	CGCG	1 cut(s)	459
BspLI	GGNNCC	6 cut(s)	15, 32, 506, 1237, 1363, 1759
BspMAI	CTGCAG	1 cut(s)	1603
BspOI	GCTAGC	1 cut(s)	1730
BspPI	GGATC	2 cut(s)	429, 1364
BspQI	GCTCTTC	1 cut(s)	888
BspT107I	GGYRCC	2 cut(s)	13, 1235
BspTI	CTTAAG	1 cut(s)	776
BsrFI	RCCGGY	2 cut(s)	10, 16
BsrI	ACTGG	2 cut(s)	43, 513
BssAI	RCCGGY	2 cut(s)	10, 16
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	2 cut(s)	421, 1369
BssSI	CACGAG	2 cut(s)	831, 1010
BssT1I	CCWWGG	1 cut(s)	70
Bst2BI	CACGAG	2 cut(s)	831, 1010
Bst4CI	ACNGT	1 cut(s)	1518
Bst6I	CTCTTC	3 cut(s)	552, 888, 1065
BstAFI	CTTAAG	1 cut(s)	776
BstDEI	CTNAG	5 cut(s)	546, 569, 614, 798, 1605
BstF5I	GGATG	3 cut(s)	328, 670, 1509
BstFNI	CGCG	1 cut(s)	459
BstKTI	GATC	2 cut(s)	424, 1372
BstMAI	GTCTC	2 cut(s)	404, 455
BstMBI	GATC	2 cut(s)	421, 1369
BstNSI	RCATGY	3 cut(s)	599, 1203, 1487
BstSFI	CTRYAG	1 cut(s)	1599
BstUI	CGCG	1 cut(s)	459
BstV2I	GAAGAC	1 cut(s)	13
BstXI	CCANNNNNNTGG	1 cut(s)	1454
BsuRI	GGCC	5 cut(s)	294, 1134, 1335, 1682, 1735
BtgZI	GCGATG	1 cut(s)	46
BtrI	CACGTC	1 cut(s)	1297
BtsCI	GGATG	3 cut(s)	328, 670, 1509
BtsIMutI	CAGTG	1 cut(s)	1346
Cfr10I	RCCGGY	2 cut(s)	10, 16
Cfr13I	GGNCC	6 cut(s)	31, 389, 505, 1133, 1361, 1733
Csp6I	GTAC	1 cut(s)	431
CspAI	ACCGGT	1 cut(s)	10
CviQI	GTAC	1 cut(s)	431
DdeI	CTNAG	5 cut(s)	546, 569, 614, 798, 1605
DpnI	GATC	2 cut(s)	423, 1371
DpnII	GATC	2 cut(s)	421, 1369
EaeI	YGGCCR	2 cut(s)	1333, 1680
Eam1104I	CTCTTC	3 cut(s)	552, 888, 1065
EarI	CTCTTC	3 cut(s)	552, 888, 1065
Eco130I	CCWWGG	1 cut(s)	70
Eco47I	GGWCC	4 cut(s)	31, 389, 505, 1361
Eco57I	CTGAAG	7 cut(s)	117, 576, 771, 771, 869, 1052, 1158
EcoO109I	RGGNCCY	1 cut(s)	505
EcoRI	GAATTC	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	70
EcoT22I	ATGCAT	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	70
FalI	AAGNNNNNCTT	6 cut(s)	867, 899, 911, 943, 1082, 1114
FaqI	GGGAC	4 cut(s)	44, 320, 518, 1347
FauI	CCCGC	1 cut(s)	643
FauNDI	CATATG	1 cut(s)	1120
FokI	GGATG	3 cut(s)	335, 677, 1516
FspBI	CTAG	5 cut(s)	71, 764, 960, 1127, 1727
GsaI	CCCAGC	1 cut(s)	1734
HaeIII	GGCC	5 cut(s)	294, 1134, 1335, 1682, 1735
HapII	CCGG	2 cut(s)	11, 17
HincII	GTYRAC	1 cut(s)	714
HindII	GTYRAC	1 cut(s)	714
HindIII	AAGCTT	3 cut(s)	99, 611, 1140
HinfI	GANTC	7 cut(s)	170, 248, 629, 715, 966, 1475, 1658
HpaII	CCGG	2 cut(s)	11, 17
Hpy166II	GTNNAC	1 cut(s)	714
Hpy188III	TCNNGA	9 cut(s)	89, 374, 503, 523, 626, 865, 887, 953, 1257
Hpy8I	GTNNAC	1 cut(s)	714
HpyAV	CCTTC	6 cut(s)	266, 436, 520, 719, 1076, 1494
HpyCH4III	ACNGT	1 cut(s)	1518
HpyCH4IV	ACGT	2 cut(s)	490, 1296
HpyF3I	CTNAG	5 cut(s)	546, 569, 614, 798, 1605
HpySE526I	ACGT	2 cut(s)	490, 1296
KroI	GCCGGC	1 cut(s)	16
KroNI	GCCGGC	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	421, 1369
LguI	GCTCTTC	1 cut(s)	888
LmnI	GCTCC	4 cut(s)	889, 1095, 1246, 1259
LweI	GCATC	7 cut(s)	313, 610, 726, 784, 920, 988, 1171
MaeI	CTAG	5 cut(s)	71, 764, 960, 1127, 1727
MaeII	ACGT	2 cut(s)	490, 1296
MaeIII	GTNAC	2 cut(s)	184, 349
MalI	GATC	2 cut(s)	423, 1371
MboI	GATC	2 cut(s)	421, 1369
MfeI	CAATTG	1 cut(s)	470
MhlI	GDGCHC	2 cut(s)	1033, 1750
MlsI	TGGCCA	1 cut(s)	1335
MluNI	TGGCCA	1 cut(s)	1335
MlyI	GAGTC	1 cut(s)	709
MmeI	TCCRAC	2 cut(s)	249, 456
Mox20I	TGGCCA	1 cut(s)	1335
Mph1103I	ATGCAT	1 cut(s)	318
MroNI	GCCGGC	1 cut(s)	16
MroXI	GAANNNNTTC	2 cut(s)	252, 882
MscI	TGGCCA	1 cut(s)	1335
MseI	TTAA	6 cut(s)	26, 635, 777, 1164, 1461, 1512
MslI	CAYNNNNRTG	2 cut(s)	321, 1001
Msp20I	TGGCCA	1 cut(s)	1335
MspA1I	CMGCKG	4 cut(s)	344, 860, 1358, 1570
MspCI	CTTAAG	1 cut(s)	776
MspI	CCGG	2 cut(s)	11, 17
MunI	CAATTG	1 cut(s)	470
Mva1269I	GAATGC	2 cut(s)	1600, 1681
MvnI	CGCG	1 cut(s)	459
NaeI	GCCGGC	1 cut(s)	18
NdeI	CATATG	1 cut(s)	1120
NdeII	GATC	2 cut(s)	421, 1369
NgoMIV	GCCGGC	1 cut(s)	16
NheI	GCTAGC	1 cut(s)	1726
NlaIV	GGNNCC	6 cut(s)	15, 32, 506, 1237, 1363, 1759
NsiI	ATGCAT	1 cut(s)	318
NspI	RCATGY	3 cut(s)	599, 1203, 1487
PciI	ACATGT	1 cut(s)	1483
PciSI	GCTCTTC	1 cut(s)	888
PctI	GAATGC	2 cut(s)	1600, 1681
PdiI	GCCGGC	1 cut(s)	18
PdmI	GAANNNNTTC	2 cut(s)	252, 882
PfeI	GAWTC	6 cut(s)	170, 248, 629, 966, 1475, 1658
PflMI	CCANNNNNTGG	1 cut(s)	871
PinAI	ACCGGT	1 cut(s)	10
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
PpuMI	RGGWCCY	1 cut(s)	505
PscI	ACATGT	1 cut(s)	1483
PshBI	ATTAAT	1 cut(s)	1164
Psp5II	RGGWCCY	1 cut(s)	505
PspFI	CCCAGC	1 cut(s)	1730
PspN4I	GGNNCC	6 cut(s)	15, 32, 506, 1237, 1363, 1759
PspPI	GGNCC	6 cut(s)	31, 389, 505, 1133, 1361, 1733
PspPPI	RGGWCCY	1 cut(s)	505
PstI	CTGCAG	1 cut(s)	1603
PvuII	CAGCTG	3 cut(s)	344, 860, 1570
RsaI	GTAC	1 cut(s)	432
RsaNI	GTAC	1 cut(s)	431
RseI	CAYNNNNRTG	2 cut(s)	321, 1001
SapI	GCTCTTC	1 cut(s)	888
SaqAI	TTAA	6 cut(s)	26, 635, 777, 1164, 1461, 1512
Sau3AI	GATC	2 cut(s)	421, 1369
Sau96I	GGNCC	6 cut(s)	31, 389, 505, 1133, 1361, 1733
SchI	GAGTC	1 cut(s)	709
SduI	GDGCHC	2 cut(s)	1033, 1750
SfaNI	GCATC	7 cut(s)	313, 610, 726, 784, 920, 988, 1171
SfcI	CTRYAG	1 cut(s)	1599
SinI	GGWCC	4 cut(s)	31, 389, 505, 1361
SmiMI	CAYNNNNRTG	2 cut(s)	321, 1001
SmlI	CTYRAG	2 cut(s)	361, 776
SmoI	CTYRAG	2 cut(s)	361, 776
SsiI	CCGC	8 cut(s)	20, 650, 1159, 1303, 1356, 1411, 1575, 1679
SspMI	CTAG	5 cut(s)	71, 764, 960, 1127, 1727
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	1 cut(s)	1518
TaiI	ACGT	2 cut(s)	493, 1299
TaqI	TCGA	4 cut(s)	367, 522, 1018, 1710
TauI	GCSGC	1 cut(s)	1682
TfiI	GAWTC	6 cut(s)	170, 248, 629, 966, 1475, 1658
Tru1I	TTAA	6 cut(s)	26, 635, 777, 1164, 1461, 1512
Tru9I	TTAA	6 cut(s)	26, 635, 777, 1164, 1461, 1512
TscAI	CASTG	1 cut(s)	1353
TspDTI	ATGAA	9 cut(s)	33, 49, 455, 828, 956, 1137, 1140, 1466, 1481
TspRI	CASTG	1 cut(s)	1353
Van91I	CCANNNNNTGG	1 cut(s)	871
Vha464I	CTTAAG	1 cut(s)	776
VpaK11BI	GGWCC	4 cut(s)	31, 389, 505, 1361
VspI	ATTAAT	1 cut(s)	1164
XapI	RAATTY	4 cut(s)	49, 518, 769, 1054
XceI	RCATGY	3 cut(s)	599, 1203, 1487
XmaJI	CCTAGG	1 cut(s)	70
XmnI	GAANNNNTTC	2 cut(s)	252, 882
XspI	CTAG	5 cut(s)	71, 764, 960, 1127, 1727
Zsp2I	ATGCAT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.