Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005604

Physical Location & Seq

Genomic Coordinates Forward (+)

51017932 .. 51029701

Gene Structure 11770 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG330900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

ATGACGAGGGTAGGCCGTGATTTTGGGGACACTATGCATAAGGATGCCATTCCAGCAGTTTCAGCTGATGTAACTTTTGCCTCAAGTCGATTTCCTGATTACAAAATTGGACCTAACAATCAGATTGTGGAGACAAAGCTGGATCAAAAGGTGCTTTCAATGAAGGAAGTTGTTGCACACGAGACAGCACAATTGTTGGAACAGCAGAAACGTCTTTCAGTTCGGGACCTTGCCAGTAAATTCGAGAAGGGGTTGGCTGCTGCTGCTAAGTTGTCTGAAGAGGCTAAACTTAGAGAGGCAGCTTCTTTGGAAAAGCATGTCCTTTTGAAGAAGCTTAGAGATGCTCTGGAATCATTAAAAGGACGGGTGGCGGGCAGAAACAAGGATGATGTGGAGGAAGCTATTTCAATGGTGGAGGCTTTAGCAGTTCAGTTGACTCAAAGAGAAGGGGAGTTGATGCAAGAAAAAGCTGAAGTGAAGAAACTAGCAAATTTTCTTAAGCAGGCTTCAGAAGATGCTAAGAAGCTCGTTGATGAAGAAAGAGCTTTTGCTCGTGCTGAAATTGAAAATGCCAAAGCAGCTGTCCAGAGAGTGGAAGAAGCACTTCAGGAGCAAGAACGAACATCACGGGCTTCAGGGAAGCAGGACTTGGAAGAACTGATGAAAGAGGTTCAGGAGGCTAGGCGAATCAAAATGCTGCATCAACCAAGCAAGGTCATGGACATGGAACACGAGCTTCGAGCTTTGAGAGCACAACTCACACAAAAGTCTGAAAATTCTCTTCGCCTTCAGAAAGAGTTGGCAATTAGCAAGAGGAGCTTGGAAAAAAGTTCTCAACCATATGAACTAGATGGCCCTGAAGCTTTAGGTTCATATTTGCGGATTAATCCTTTGTCTGATGATGCAATAGAACTTTCTACATGCTCAATTCAATGGTATCGTCTATCATCTGATGGTGCCAGCAAGGAGCTTATATCAGGAGCAATAAAATCAGTATATGCCCCAGAGCCTTTCGACGTGGGGCGGTTCTTGCAGGCAGATATTGTATTTGATGGCCAAAGACTAACACTGACCACCGCTGGTCCCATTGATCCTGCTGCTGGTTTGGGAAGTTATGTAGAGGCACTTGTGCGGAAACATGATATTGAGTTCAATGTAGTTATTACCCAAATGAATGGCGTTAATCATCTGTCAGAATCTATACATGTATTTCATGTGGGAAGGATGAGGATTAAACTGTGCAAGGGAAAGACAACTATTTCTAAAGAATACTTTTCGGCTTCAATGCAGCTGTGCGGAGTTAGAGGAGGTGGGAATGCTGCAGCTCAGGCATTGTTTTGGCAAGTCAAGCAAGGTCTTTCCTTTGTATTGGCATTTGAATCAGAACGAGAGAGGAATGCGGCCATCATGCTTGCGAGGAGATTTGCTTTCGATTGTAATATCATGCTAGCTGGGCCAGATGACAGAGCACCTTTAGGAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0010119 GO:0016043 GO:0030029 GO:0030036 GO:0050789 GO:0050794 GO:0065007 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAB-ABD SCAB-IgPH SCAB_CC

Protein Analysis

494

Amino Acids

54.94

Weight (kDa)

6.8

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCAB-ABD	PF16711	54 - 96	2.4e-24	Actin-binding domain of plant-specific actin-binding protein
SCAB_CC	PF16712	100 - 267	1.6e-82	Coiled-coil regions of plant-specific actin-binding protein
SCAB-Ig	PF16709	281 - 378	3.3e-45	Ig domain of plant-specific actin-binding protein
SCAB-PH	PF17684	381 - 488	3.1e-58	PH domain of plant-specific actin-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0005604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26770 AT2G26770 AT2G26770
fragaria_vesca	FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660
malus_domestica	MD03G1156800.v1.1
prunus_persica	Prupe.4G270000_v2.0.a1 Prupe.4G270000_v2.0.a1
pyrus_communis	pycom5153684g00130
rosa_chinensis	RchiOBHm_Chr5g0050171
rosa_laevigata	RLG00000034689
rosa_multiflora	Rmu_sc0002159.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030850
rosa_rugosa	Rorug05G0259100 Rorug05G0259200
rosa_samantha	Rh5AG330900 Rh5BG341600 Rh5CG368100 Rh5DG354400
rosa_wichuraiana	Rw5G031270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	956
AccB7I	CCANNNNNTGG	1 cut(s)	592
AciI	CCGC	7 cut(s)	371, 880, 1024, 1077, 1132, 1296, 1400
AclWI	GGATC	2 cut(s)	150, 1085
AcoI	YGGCCR	2 cut(s)	1054, 1401
AcsI	RAATTY	3 cut(s)	239, 490, 775
AcuI	CTGAAG	7 cut(s)	297, 492, 492, 590, 618, 773, 879
AfiI	CCNNNNNNNGG	2 cut(s)	592, 1100
AflII	CTTAAG	1 cut(s)	497
AflIII	ACRYGT	1 cut(s)	1204
AgsI	TTSAA	8 cut(s)	159, 328, 408, 566, 932, 1153, 1284, 1379
AjiI	CACGTC	1 cut(s)	1018
AjuI	GAANNNNNNNTTGG	2 cut(s)	632, 664
Alw21I	GWGCWC	2 cut(s)	754, 1471
Alw26I	GTCTC	2 cut(s)	125, 176
AlwI	GGATC	2 cut(s)	150, 1085
AoxI	GGCC	5 cut(s)	13, 853, 1054, 1401, 1454
ApoI	RAATTY	3 cut(s)	239, 490, 775
ArsI	GACNNNNNNTTYG	2 cut(s)	567, 599
AseI	ATTAAT	1 cut(s)	885
Asp700I	GAANNNNTTC	1 cut(s)	603
AspS9I	GGNCC	5 cut(s)	110, 226, 854, 1082, 1454
AsuNHI	GCTAGC	1 cut(s)	1447
AvaII	GGWCC	3 cut(s)	110, 226, 1082
BalI	TGGCCA	1 cut(s)	1056
BanI	GGYRCC	1 cut(s)	956
BauI	CACGAG	3 cut(s)	179, 552, 731
Bbv12I	GWGCWC	2 cut(s)	754, 1471
BccI	CCATC	4 cut(s)	845, 947, 1046, 1412
BcoDI	GTCTC	2 cut(s)	125, 176
BfaI	CTAG	4 cut(s)	485, 681, 848, 1448
BfmI	CTRYAG	1 cut(s)	1320
BfrI	CTTAAG	1 cut(s)	497
Bme18I	GGWCC	3 cut(s)	110, 226, 1082
BmgBI	CACGTC	1 cut(s)	1018
BmgT120I	GGNCC	5 cut(s)	110, 226, 854, 1082, 1454
BmiI	GGNNCC	4 cut(s)	227, 958, 1084, 1480
BmsI	GCATC	6 cut(s)	34, 331, 447, 505, 709, 892
BmtI	GCTAGC	1 cut(s)	1451
BplI	GAGNNNNNCTC	2 cut(s)	741, 773
Bpu10I	CCTNAGC	1 cut(s)	1326
BpuEI	CTTGAG	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	2 cut(s)	592, 1100
Bse1I	ACTGG	1 cut(s)	234
BseGI	GGATG	3 cut(s)	49, 391, 1230
BseLI	CCNNNNNNNGG	2 cut(s)	592, 1100
BseMII	CTCAG	1 cut(s)	1340
BseNI	ACTGG	1 cut(s)	234
BseRI	GAGGAG	3 cut(s)	829, 1320, 1432
BseYI	CCCAGC	1 cut(s)	1451
BshFI	GGCC	5 cut(s)	15, 855, 1056, 1403, 1456
BshNI	GGYRCC	1 cut(s)	956
BsiHKAI	GWGCWC	2 cut(s)	754, 1471
BslFI	GGGAC	3 cut(s)	41, 239, 1068
BslI	CCNNNNNNNGG	2 cut(s)	592, 1100
BsmAI	GTCTC	2 cut(s)	125, 176
BsmFI	GGGAC	3 cut(s)	41, 239, 1068
BsmI	GAATGC	2 cut(s)	1321, 1402
BsnI	GGCC	5 cut(s)	15, 855, 1056, 1403, 1456
Bsp1286I	GDGCHC	2 cut(s)	754, 1471
Bsp143I	GATC	2 cut(s)	142, 1090
BspACI	CCGC	7 cut(s)	371, 880, 1024, 1077, 1132, 1296, 1400
BspANI	GGCC	5 cut(s)	15, 855, 1056, 1403, 1456
BspCNI	CTCAG	1 cut(s)	1339
BspLI	GGNNCC	4 cut(s)	227, 958, 1084, 1480
BspMAI	CTGCAG	1 cut(s)	1324
BspOI	GCTAGC	1 cut(s)	1451
BspPI	GGATC	2 cut(s)	150, 1085
BspT107I	GGYRCC	1 cut(s)	956
BspTI	CTTAAG	1 cut(s)	497
BsrI	ACTGG	1 cut(s)	234
BssMI	GATC	2 cut(s)	142, 1090
BssSI	CACGAG	3 cut(s)	179, 552, 731
Bst2BI	CACGAG	3 cut(s)	179, 552, 731
Bst4CI	ACNGT	1 cut(s)	1239
Bst6I	CTCTTC	2 cut(s)	273, 786
BstAFI	CTTAAG	1 cut(s)	497
BstC8I	GCNNGC	6 cut(s)	373, 504, 961, 1035, 1413, 1449
BstDEI	CTNAG	5 cut(s)	267, 290, 335, 519, 1326
BstF5I	GGATG	3 cut(s)	49, 391, 1230
BstKTI	GATC	2 cut(s)	145, 1093
BstMAI	GTCTC	2 cut(s)	125, 176
BstMBI	GATC	2 cut(s)	142, 1090
BstNSI	RCATGY	3 cut(s)	320, 924, 1208
BstSFI	CTRYAG	1 cut(s)	1320
BstXI	CCANNNNNNTGG	1 cut(s)	1175
BsuRI	GGCC	5 cut(s)	15, 855, 1056, 1403, 1456
BtrI	CACGTC	1 cut(s)	1018
BtsCI	GGATG	3 cut(s)	49, 391, 1230
BtsIMutI	CAGTG	1 cut(s)	1067
Cac8I	GCNNGC	6 cut(s)	373, 504, 961, 1035, 1413, 1449
Cfr13I	GGNCC	5 cut(s)	110, 226, 854, 1082, 1454
CviAII	CATG	9 cut(s)	317, 718, 724, 921, 1139, 1205, 1214, 1408, 1444
DdeI	CTNAG	5 cut(s)	267, 290, 335, 519, 1326
DpnI	GATC	2 cut(s)	144, 1092
DpnII	GATC	2 cut(s)	142, 1090
EaeI	YGGCCR	2 cut(s)	1054, 1401
Eam1104I	CTCTTC	2 cut(s)	273, 786
EarI	CTCTTC	2 cut(s)	273, 786
Eco47I	GGWCC	3 cut(s)	110, 226, 1082
Eco57I	CTGAAG	7 cut(s)	297, 492, 492, 590, 618, 773, 879
EcoO109I	RGGNCCY	1 cut(s)	226
EcoT22I	ATGCAT	1 cut(s)	39
FaeI	CATG	9 cut(s)	320, 721, 727, 924, 1142, 1208, 1217, 1411, 1447
FalI	AAGNNNNNCTT	6 cut(s)	588, 620, 632, 664, 803, 835
FaqI	GGGAC	3 cut(s)	41, 239, 1068
FatI	CATG	9 cut(s)	316, 717, 723, 920, 1138, 1204, 1213, 1407, 1443
FauI	CCCGC	1 cut(s)	364
FauNDI	CATATG	1 cut(s)	841
FokI	GGATG	3 cut(s)	56, 398, 1237
FspBI	CTAG	4 cut(s)	485, 681, 848, 1448
GsaI	CCCAGC	1 cut(s)	1455
HaeIII	GGCC	5 cut(s)	15, 855, 1056, 1403, 1456
Hin1II	CATG	9 cut(s)	320, 721, 727, 924, 1142, 1208, 1217, 1411, 1447
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HindIII	AAGCTT	2 cut(s)	332, 861
HinfI	GANTC	5 cut(s)	350, 436, 687, 1196, 1379
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188I	TCNGA	9 cut(s)	123, 277, 511, 772, 792, 898, 952, 1195, 1384
Hpy188III	TCNNGA	8 cut(s)	95, 224, 244, 347, 586, 608, 674, 978
Hpy8I	GTNNAC	1 cut(s)	435
Hpy99I	CGWCG	1 cut(s)	1019
HpyAV	CCTTC	5 cut(s)	157, 241, 440, 797, 1215
HpyCH4III	ACNGT	1 cut(s)	1239
HpyCH4IV	ACGT	2 cut(s)	211, 1017
HpyCH4V	TGCA	9 cut(s)	37, 176, 460, 700, 905, 1033, 1242, 1288, 1322
HpyF3I	CTNAG	5 cut(s)	267, 290, 335, 519, 1326
HpySE526I	ACGT	2 cut(s)	211, 1017
Hsp92II	CATG	9 cut(s)	320, 721, 727, 924, 1142, 1208, 1217, 1411, 1447
Kzo9I	GATC	2 cut(s)	142, 1090
LmnI	GCTCC	4 cut(s)	610, 816, 967, 980
LweI	GCATC	6 cut(s)	34, 331, 447, 505, 709, 892
MaeI	CTAG	4 cut(s)	485, 681, 848, 1448
MaeII	ACGT	2 cut(s)	211, 1017
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	2 cut(s)	144, 1092
MboI	GATC	2 cut(s)	142, 1090
MboII	GAAGA	8 cut(s)	290, 340, 490, 524, 548, 608, 665, 773
MfeI	CAATTG	1 cut(s)	191
MhlI	GDGCHC	2 cut(s)	754, 1471
MlsI	TGGCCA	1 cut(s)	1056
MluCI	AATT	8 cut(s)	105, 191, 239, 490, 561, 775, 804, 927
MluNI	TGGCCA	1 cut(s)	1056
MlyI	GAGTC	1 cut(s)	430
MmeI	TCCRAC	1 cut(s)	177
Mox20I	TGGCCA	1 cut(s)	1056
Mph1103I	ATGCAT	1 cut(s)	39
MroXI	GAANNNNTTC	1 cut(s)	603
MscI	TGGCCA	1 cut(s)	1056
MseI	TTAA	5 cut(s)	356, 498, 885, 1182, 1233
MslI	CAYNNNNRTG	2 cut(s)	42, 722
Msp20I	TGGCCA	1 cut(s)	1056
MspA1I	CMGCKG	4 cut(s)	65, 581, 1079, 1291
MspCI	CTTAAG	1 cut(s)	497
MunI	CAATTG	1 cut(s)	191
Mva1269I	GAATGC	2 cut(s)	1321, 1402
NdeI	CATATG	1 cut(s)	841
NdeII	GATC	2 cut(s)	142, 1090
NheI	GCTAGC	1 cut(s)	1447
NlaIII	CATG	9 cut(s)	320, 721, 727, 924, 1142, 1208, 1217, 1411, 1447
NlaIV	GGNNCC	4 cut(s)	227, 958, 1084, 1480
NsiI	ATGCAT	1 cut(s)	39
NspI	RCATGY	3 cut(s)	320, 924, 1208
PciI	ACATGT	1 cut(s)	1204
PctI	GAATGC	2 cut(s)	1321, 1402
PdmI	GAANNNNTTC	1 cut(s)	603
PfeI	GAWTC	4 cut(s)	350, 687, 1196, 1379
PflMI	CCANNNNNTGG	1 cut(s)	592
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
PpuMI	RGGWCCY	1 cut(s)	226
PscI	ACATGT	1 cut(s)	1204
PshBI	ATTAAT	1 cut(s)	885
Psp5II	RGGWCCY	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	1451
PspN4I	GGNNCC	4 cut(s)	227, 958, 1084, 1480
PspPI	GGNCC	5 cut(s)	110, 226, 854, 1082, 1454
PspPPI	RGGWCCY	1 cut(s)	226
PstI	CTGCAG	1 cut(s)	1324
PvuII	CAGCTG	3 cut(s)	65, 581, 1291
RseI	CAYNNNNRTG	2 cut(s)	42, 722
SaqAI	TTAA	5 cut(s)	356, 498, 885, 1182, 1233
Sau3AI	GATC	2 cut(s)	142, 1090
Sau96I	GGNCC	5 cut(s)	110, 226, 854, 1082, 1454
SchI	GAGTC	1 cut(s)	430
SduI	GDGCHC	2 cut(s)	754, 1471
SfaNI	GCATC	6 cut(s)	34, 331, 447, 505, 709, 892
SfcI	CTRYAG	1 cut(s)	1320
SinI	GGWCC	3 cut(s)	110, 226, 1082
SmiMI	CAYNNNNRTG	2 cut(s)	42, 722
SmlI	CTYRAG	2 cut(s)	82, 497
SmoI	CTYRAG	2 cut(s)	82, 497
Sse9I	AATT	8 cut(s)	105, 191, 239, 490, 561, 775, 804, 927
SsiI	CCGC	7 cut(s)	371, 880, 1024, 1077, 1132, 1296, 1400
SspMI	CTAG	4 cut(s)	485, 681, 848, 1448
TaaI	ACNGT	1 cut(s)	1239
TaiI	ACGT	2 cut(s)	214, 1020
TaqI	TCGA	5 cut(s)	88, 243, 739, 1014, 1431
TasI	AATT	8 cut(s)	105, 191, 239, 490, 561, 775, 804, 927
TauI	GCSGC	1 cut(s)	1403
TfiI	GAWTC	4 cut(s)	350, 687, 1196, 1379
Tru1I	TTAA	5 cut(s)	356, 498, 885, 1182, 1233
Tru9I	TTAA	5 cut(s)	356, 498, 885, 1182, 1233
TscAI	CASTG	1 cut(s)	1074
TspDTI	ATGAA	7 cut(s)	176, 549, 677, 858, 861, 1187, 1202
TspRI	CASTG	1 cut(s)	1074
Van91I	CCANNNNNTGG	1 cut(s)	592
Vha464I	CTTAAG	1 cut(s)	497
VpaK11BI	GGWCC	3 cut(s)	110, 226, 1082
VspI	ATTAAT	1 cut(s)	885
XapI	RAATTY	3 cut(s)	239, 490, 775
XceI	RCATGY	3 cut(s)	320, 924, 1208
XmnI	GAANNNNTTC	1 cut(s)	603
XspI	CTAG	4 cut(s)	485, 681, 848, 1448
Zsp2I	ATGCAT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.