Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005604

Physical Location & Seq

Genomic Coordinates Forward (+)

29118658 .. 29121722

Gene Structure 3065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0259200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGACTACCACTACTCACAAACAGCTTGAAGTTCTTACAGATGATCAAACACCACAGAAATGGTGTGTTCTATTGAGAGAAGAAGTGTTCAAAAAGTTCATGTCTCAAGATATCTTATTGTCTAGTCTAAGAAGCTCTGGCCAAAGCACTATTGATTGGTTTCAGACAGAGCAATATTATGTGCTCAAAGCAGAACTACCTGGAGAAGGGAAAAACAGTGTTCGAGTGTATGCTGAAAATGCGAAGGTTTTGGAGATTAGTGGGCAGTGGAAGCAGCAGCAACAGCAAAAAGATCAGTCCAAGACAAACAGTACAAGAGATTGGAGAAGTGGGAATTGGTGGGAATCTGGGTATGTTAGGAGGCTTGAGCTCCCACAAGATGCAGATTGGAGAAAGATAGAGGCATATGTGACCAATGACCTGATTCTGGAAATCAAAATTCACAAGATCAACAACTCCTTGGATGCTGATAATAATCAGAACACTACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0010119 GO:0016043 GO:0030029 GO:0030036 GO:0050789 GO:0050794 GO:0065007 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAB-ABD SCAB-IgPH SCAB_CC

Protein Analysis

164

Amino Acids

19.21

Weight (kDa)

5.75

Isoelectric Point (pI)

53.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	52 - 153	1.9e-08	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26770 AT2G26770 AT2G26770
fragaria_vesca	FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660 FvH4_3g27660
malus_domestica	MD03G1156800.v1.1
prunus_persica	Prupe.4G270000_v2.0.a1 Prupe.4G270000_v2.0.a1
pyrus_communis	pycom5153684g00130
rosa_chinensis	RchiOBHm_Chr5g0050171
rosa_laevigata	RLG00000034689
rosa_multiflora	Rmu_sc0002159.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030850
rosa_rugosa	Rorug05G0259100 Rorug05G0259200
rosa_samantha	Rh5AG330900 Rh5BG341600 Rh5CG368100 Rh5DG354400
rosa_wichuraiana	Rw5G031270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	1 cut(s)	438
AfaI	GTAC	1 cut(s)	313
AfiI	CCNNNNNNNGG	2 cut(s)	206, 427
AgsI	TTSAA	2 cut(s)	29, 91
AjnI	CCWGG	1 cut(s)	199
AjuI	GAANNNNNNNTTGG	2 cut(s)	319, 351
AluBI	AGCT	3 cut(s)	25, 135, 370
AluI	AGCT	3 cut(s)	25, 135, 370
Alw21I	GWGCWC	2 cut(s)	186, 372
Alw26I	GTCTC	1 cut(s)	108
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	2 cut(s)	274, 277
ApoI	RAATTY	1 cut(s)	438
BalI	TGGCCA	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	372
Bbv12I	GWGCWC	2 cut(s)	186, 372
BbvI	GCAGC	2 cut(s)	286, 289
BciT130I	CCWGG	1 cut(s)	201
BclI	TGATCA	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	108
BfaI	CTAG	1 cut(s)	123
BisI	GCNGC	2 cut(s)	275, 278
BlsI	GCNGC	2 cut(s)	276, 279
Bme1390I	CCNGG	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	2 cut(s)	370, 454
BpmI	CTGGAG	1 cut(s)	222
BpuEI	CTTGAG	2 cut(s)	90, 386
BsaBI	GATNNNNATC	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	459
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 427
Bse8I	GATNNNNATC	1 cut(s)	474
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	1 cut(s)	469
BseJI	GATNNNNATC	1 cut(s)	474
BseLI	CCNNNNNNNGG	2 cut(s)	206, 427
BseXI	GCAGC	2 cut(s)	286, 289
BshFI	GGCC	1 cut(s)	141
BsiHKAI	GWGCWC	2 cut(s)	186, 372
BslI	CCNNNNNNNGG	2 cut(s)	206, 427
BsmAI	GTCTC	1 cut(s)	108
BsnI	GGCC	1 cut(s)	141
Bsp1286I	GDGCHC	2 cut(s)	186, 372
Bsp143I	GATC	3 cut(s)	43, 292, 447
BspANI	GGCC	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	3 cut(s)	43, 292, 447
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	2 cut(s)	218, 311
BstDEI	CTNAG	1 cut(s)	128
BstENI	CCTNNNNNAGG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	469
BstKTI	GATC	3 cut(s)	46, 295, 450
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	3 cut(s)	43, 292, 447
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 271, 283
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstV1I	GCAGC	2 cut(s)	286, 289
BstXI	CCANNNNNNTGG	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	469
BtsI	GCAGTG	1 cut(s)	272
BtsIMutI	CAGTG	2 cut(s)	223, 272
Csp6I	GTAC	1 cut(s)	312
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	5 cut(s)	25, 135, 141, 364, 370
CviKI_1	RGCY	5 cut(s)	25, 135, 141, 364, 370
CviQI	GTAC	1 cut(s)	312
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	3 cut(s)	45, 294, 449
DpnII	GATC	3 cut(s)	43, 292, 447
EaeI	YGGCCR	1 cut(s)	139
Ecl136II	GAGCTC	1 cut(s)	370
Eco130I	CCWWGG	1 cut(s)	459
Eco24I	GRGCYC	1 cut(s)	372
Eco32I	GATATC	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	370
EcoICRI	GAGCTC	1 cut(s)	370
EcoNI	CCTNNNNNAGG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	199
EcoRV	GATATC	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	459
EcoT38I	GRGCYC	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	1 cut(s)	103
FaiI	YATR	7 cut(s)	101, 180, 231, 354, 406, 408, 493
FatI	CATG	1 cut(s)	99
FauNDI	CATATG	1 cut(s)	406
FbaI	TGATCA	1 cut(s)	43
Fnu4HI	GCNGC	2 cut(s)	275, 278
FokI	GGATG	1 cut(s)	476
FriOI	GRGCYC	1 cut(s)	372
Fsp4HI	GCNGC	2 cut(s)	275, 278
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	2 cut(s)	275, 278
GsuI	CTGGAG	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	103
HinfI	GANTC	2 cut(s)	344, 424
Hpy188I	TCNGA	2 cut(s)	165, 480
Hpy188III	TCNNGA	2 cut(s)	107, 428
HpyAV	CCTTC	2 cut(s)	200, 238
HpyCH4III	ACNGT	2 cut(s)	218, 311
HpyCH4V	TGCA	2 cut(s)	383, 491
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 271, 283
HpyF3I	CTNAG	1 cut(s)	128
Hsp92II	CATG	1 cut(s)	103
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	3 cut(s)	43, 292, 447
LmnI	GCTCC	1 cut(s)	375
LpnPI	CCDG	6 cut(s)	123, 186, 213, 333, 413, 434
Lsp1109I	GCAGC	2 cut(s)	286, 289
LweI	GCATC	2 cut(s)	370, 454
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	3 cut(s)	45, 294, 449
MboI	GATC	3 cut(s)	43, 292, 447
MboII	GAAGA	1 cut(s)	92
MhlI	GDGCHC	2 cut(s)	186, 372
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	2 cut(s)	334, 438
MluNI	TGGCCA	1 cut(s)	141
MnlI	CCTC	2 cut(s)	354, 394
Mox20I	TGGCCA	1 cut(s)	141
MscI	TGGCCA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	58
Msp20I	TGGCCA	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	3 cut(s)	239, 271, 283
NdeI	CATATG	1 cut(s)	406
NdeII	GATC	3 cut(s)	43, 292, 447
NlaIII	CATG	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	409
PfeI	GAWTC	2 cut(s)	344, 424
PkrI	GCNGC	2 cut(s)	276, 279
Psp124BI	GAGCTC	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	313
RsaNI	GTAC	1 cut(s)	312
RseI	CAYNNNNRTG	1 cut(s)	58
SacI	GAGCTC	1 cut(s)	372
SatI	GCNGC	2 cut(s)	275, 278
Sau3AI	GATC	3 cut(s)	43, 292, 447
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	2 cut(s)	186, 372
SetI	ASST	6 cut(s)	27, 137, 202, 249, 372, 423
SfaNI	GCATC	2 cut(s)	370, 454
SmiMI	CAYNNNNRTG	1 cut(s)	58
SmlI	CTYRAG	2 cut(s)	105, 365
SmoI	CTYRAG	2 cut(s)	105, 365
Sse9I	AATT	2 cut(s)	334, 438
SspI	AATATT	1 cut(s)	176
SspMI	CTAG	1 cut(s)	123
SstI	GAGCTC	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	2 cut(s)	218, 311
TaqI	TCGA	1 cut(s)	223
TasI	AATT	2 cut(s)	334, 438
TatI	WGTACW	1 cut(s)	311
TfiI	GAWTC	2 cut(s)	344, 424
TscAI	CASTG	2 cut(s)	223, 272
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	2 cut(s)	274, 277
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	1 cut(s)	88
TspRI	CASTG	2 cut(s)	223, 272
XagI	CCTNNNNNAGG	1 cut(s)	204
XapI	RAATTY	1 cut(s)	438
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.