Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0010641

Physical Location & Seq

Genomic Coordinates Forward (+)

6509068 .. 6512717

Gene Structure 3650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1054400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGAGGAGAGGTATGAAGCAATGAAGGATCTTGGTTCTGGGAATTTTGGGGTGGCGAGGCTGGTCAGGGATAAGAAGACAAAGGAGCTTGTGGCTGTCAAATACATTGAGAGGGGAAAAAAGATTGATGAGAATGTTCAGAGGGAAATCATAAATCACAGATCGCTGAGGCATCCAAATATTGTCAGGTTCAAAGAGCTCTTGTTGACTCCAAGTCATTTAGCAATTGTCATGGAATACGCAGCTGGCGGTGAACTTTTTGAGAGGATATGCACTGCTGGTAGATTTAGTGAAGACGAGGCAAGGTTTTTCTTCCAACAGCTGATATCTGGAGTCGGTTACTGTCATGCCATGGAAATTTGTCACAGGGATCTGAAACTGGAAAACACACTTTTGGATGGAAGTGCTTCACCACGTCTTAAAATATGCGACTTTGGATACTCCAAGTCTGCTATTTTACACTCACAGCCAAAGTCAACTGTTGGAACGCCTGCATACATTGCTCCGGAGGTTCTATCACGGAAGGAATATGACGGAAAGATTGCAGATGTTTGGTCATGCGGTGTGACGCTGTATGTGATGTTGGTAGGAGCATATCCTTTTGAGGATCCTGAAGAACCTAGAAACTTTCGTAAGACCATTGAGAGAATTATGAGTGTCCAGTACACCATTCCCGACTATGTACGTGTTTCTGCAGACTGCAAGCACCTTCTTTCTCGTGTTTTTGTTGCCAACCCTTCTAAGAGGATTAGTCTTCCTGAGATAAAAGAGCACCCTTGGTTTCTGAAAAATCTGCCGAAAGAGCTAATTGAGGTTGAGAGAACAAACTATGCGTCAGTGGAGCGTGACCAGCCTAAACAGAGCATTGAAGAAATAAATAAGATCATACACGAGGCAAGGACACCAGGGGAAGGGTCCAAAGCAGGTGGTAAAGCTGTTGCTGGGCCGTCCGATTCTGATGATCTAGAGGCTGATTTGGACTCCGAAGTTGATTGCAGTGGTGACTTTTCTGGCCATCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

341

Amino Acids

38.36

Weight (kDa)

5.99

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	5 - 261	1.5e-72	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	7 - 257	1.5e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23030
fragaria_vesca	FvH4_5g20490 FvH4_5g20490 FvH4_5g20490
malus_domestica	MD04G1054400.v1.1 MD06G1046300.v1.1
prunus_persica	Prupe.5G054500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0205831
rosa_laevigata	RLG00000003352
rosa_multiflora	Rmu_sc0000076.1_g000048 Rmu_sc0008518.1_g000008
rosa_roxburghii	Rroxscaffold_3G00251960
rosa_rugosa	Rorug07G0093200 Rorug07G0093200 Rorug07G0093300
rosa_samantha	Rh7AG224800 Rh7BG220000 Rh7CG238500 Rh7DG231600
rosa_wichuraiana	Rw7G019390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	914
Acc36I	ACCTGC	1 cut(s)	914
AccIII	TCCGGA	1 cut(s)	505
AciI	CCGC	2 cut(s)	249, 561
AclWI	GGATC	4 cut(s)	36, 378, 602, 615
AcoI	YGGCCR	1 cut(s)	1012
AcsI	RAATTY	2 cut(s)	43, 357
AcuI	CTGAAG	1 cut(s)	633
AfaI	GTAC	2 cut(s)	665, 684
AfiI	CCNNNNNNNGG	1 cut(s)	911
AflIII	ACRYGT	1 cut(s)	685
AgsI	TTSAA	2 cut(s)	193, 869
AhdI	GACNNNNNGTC	1 cut(s)	213
AjiI	CACGTC	1 cut(s)	416
AjnI	CCWGG	1 cut(s)	904
AluBI	AGCT	6 cut(s)	88, 199, 245, 322, 805, 935
AluI	AGCT	6 cut(s)	88, 199, 245, 322, 805, 935
Alw21I	GWGCWC	2 cut(s)	201, 774
AlwI	GGATC	4 cut(s)	36, 378, 602, 615
Aor13HI	TCCGGA	1 cut(s)	505
AoxI	GGCC	2 cut(s)	944, 1012
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	2 cut(s)	43, 357
ArsI	GACNNNNNNTTYG	2 cut(s)	818, 850
Asp700I	GAANNNNTTC	1 cut(s)	406
AspS9I	GGNCC	2 cut(s)	915, 944
AsuHPI	GGTGA	3 cut(s)	263, 402, 1013
AvaII	GGWCC	1 cut(s)	915
BalI	TGGCCA	1 cut(s)	1014
BamHI	GGATCC	1 cut(s)	607
BanII	GRGCYC	1 cut(s)	201
BauI	CACGAG	2 cut(s)	717, 890
BbsI	GAAGAC	3 cut(s)	83, 300, 746
Bbv12I	GWGCWC	2 cut(s)	201, 774
BbvCI	CCTCAGC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	254
BccI	CCATC	1 cut(s)	392
BceAI	ACGGC	1 cut(s)	931
BciT130I	CCWGG	1 cut(s)	906
BciVI	GTATCC	1 cut(s)	431
BfaI	CTAG	2 cut(s)	621, 965
BfmI	CTRYAG	1 cut(s)	693
BfuAI	ACCTGC	1 cut(s)	914
BfuI	GTATCC	1 cut(s)	431
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	906
Bme18I	GGWCC	1 cut(s)	915
BmeRI	GACNNNNNGTC	1 cut(s)	213
BmgBI	CACGTC	1 cut(s)	416
BmgT120I	GGNCC	2 cut(s)	915, 944
BmiI	GGNNCC	2 cut(s)	609, 916
BmrFI	CCNGG	1 cut(s)	906
BmsI	GCATC	1 cut(s)	181
BpiI	GAAGAC	3 cut(s)	83, 300, 746
BpmI	CTGGAG	1 cut(s)	351
Bpu10I	CCTNAGC	1 cut(s)	167
BsaAI	YACGTR	1 cut(s)	686
BsaJI	CCNNGG	3 cut(s)	351, 776, 905
BsaWI	WCCGGW	1 cut(s)	505
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	911
Bse1I	ACTGG	2 cut(s)	384, 661
Bse3DI	GCAATG	2 cut(s)	27, 498
BseAI	TCCGGA	1 cut(s)	505
BseBI	CCWGG	1 cut(s)	906
BseDI	CCNNGG	3 cut(s)	351, 776, 905
BseGI	GGATG	3 cut(s)	172, 403, 1015
BseLI	CCNNNNNNNGG	1 cut(s)	911
BseMI	GCAATG	2 cut(s)	27, 498
BseMII	CTCAG	2 cut(s)	158, 750
BseNI	ACTGG	2 cut(s)	384, 661
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	254
BseYI	CCCAGC	1 cut(s)	941
BshFI	GGCC	2 cut(s)	946, 1014
BsiHKAI	GWGCWC	2 cut(s)	201, 774
BsiSI	CCGG	1 cut(s)	506
BslI	CCNNNNNNNGG	1 cut(s)	911
BsnI	GGCC	2 cut(s)	946, 1014
Bsp1286I	GDGCHC	2 cut(s)	201, 774
Bsp13I	TCCGGA	1 cut(s)	505
Bsp143I	GATC	6 cut(s)	28, 161, 370, 607, 882, 961
Bsp19I	CCATGG	1 cut(s)	351
BspACI	CCGC	2 cut(s)	249, 561
BspANI	GGCC	2 cut(s)	946, 1014
BspCNI	CTCAG	2 cut(s)	159, 751
BspEI	TCCGGA	1 cut(s)	505
BspLI	GGNNCC	2 cut(s)	609, 916
BspMAI	CTGCAG	1 cut(s)	697
BspMI	ACCTGC	1 cut(s)	914
BspPI	GGATC	4 cut(s)	36, 378, 602, 615
BsrDI	GCAATG	2 cut(s)	27, 498
BsrI	ACTGG	2 cut(s)	384, 661
BssECI	CCNNGG	3 cut(s)	351, 776, 905
BssMI	GATC	6 cut(s)	28, 161, 370, 607, 882, 961
BssSI	CACGAG	2 cut(s)	717, 890
BssT1I	CCWWGG	2 cut(s)	351, 776
Bst2BI	CACGAG	2 cut(s)	717, 890
Bst2UI	CCWGG	1 cut(s)	906
Bst4CI	ACNGT	2 cut(s)	344, 481
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstBAI	YACGTR	1 cut(s)	686
BstC8I	GCNNGC	3 cut(s)	247, 492, 704
BstDEI	CTNAG	3 cut(s)	167, 741, 759
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	3 cut(s)	172, 403, 1015
BstKTI	GATC	6 cut(s)	31, 164, 373, 610, 885, 964
BstMBI	GATC	6 cut(s)	28, 161, 370, 607, 882, 961
BstMWI	GCNNNNNNNGC	3 cut(s)	500, 802, 850
BstNI	CCWGG	1 cut(s)	906
BstSCI	CCNGG	1 cut(s)	904
BstSFI	CTRYAG	1 cut(s)	693
BstV1I	GCAGC	1 cut(s)	254
BstV2I	GAAGAC	3 cut(s)	83, 300, 746
BstX2I	RGATCY	3 cut(s)	28, 370, 607
BstYI	RGATCY	3 cut(s)	28, 370, 607
BsuI	GTATCC	1 cut(s)	431
BsuRI	GGCC	2 cut(s)	946, 1014
BtgI	CCRYGG	1 cut(s)	351
BtrI	CACGTC	1 cut(s)	416
BtsCI	GGATG	3 cut(s)	172, 403, 1015
BtsI	GCAGTG	2 cut(s)	273, 1003
BtsIMutI	CAGTG	3 cut(s)	273, 843, 1003
BveI	ACCTGC	1 cut(s)	914
Cac8I	GCNNGC	3 cut(s)	247, 492, 704
Cfr13I	GGNCC	2 cut(s)	915, 944
CseI	GACGC	2 cut(s)	577, 822
Csp6I	GTAC	2 cut(s)	664, 683
CspCI	CAANNNNNGTGG	2 cut(s)	907, 942
CviAII	CATG	4 cut(s)	232, 347, 352, 558
CviQI	GTAC	2 cut(s)	664, 683
DdeI	CTNAG	3 cut(s)	167, 741, 759
DpnI	GATC	6 cut(s)	30, 163, 372, 609, 884, 963
DpnII	GATC	6 cut(s)	28, 161, 370, 607, 882, 961
DriI	GACNNNNNGTC	1 cut(s)	213
EaeI	YGGCCR	1 cut(s)	1012
Eam1105I	GACNNNNNGTC	1 cut(s)	213
Ecl136II	GAGCTC	1 cut(s)	199
Eco130I	CCWWGG	2 cut(s)	351, 776
Eco24I	GRGCYC	1 cut(s)	201
Eco32I	GATATC	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	915
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	633
EcoICRI	GAGCTC	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	904
EcoRV	GATATC	1 cut(s)	327
EcoT14I	CCWWGG	2 cut(s)	351, 776
EcoT38I	GRGCYC	1 cut(s)	201
ErhI	CCWWGG	2 cut(s)	351, 776
FaeI	CATG	4 cut(s)	235, 350, 355, 561
FatI	CATG	4 cut(s)	231, 346, 351, 557
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	3 cut(s)	159, 410, 1002
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	2 cut(s)	621, 965
GluI	GCNGC	1 cut(s)	243
GsaI	CCCAGC	1 cut(s)	945
GsuI	CTGGAG	1 cut(s)	351
HaeIII	GGCC	2 cut(s)	946, 1014
HapII	CCGG	1 cut(s)	506
HgaI	GACGC	2 cut(s)	577, 822
Hin1II	CATG	4 cut(s)	235, 350, 355, 561
HincII	GTYRAC	2 cut(s)	207, 477
HindII	GTYRAC	2 cut(s)	207, 477
HinfI	GANTC	4 cut(s)	208, 333, 953, 980
HpaII	CCGG	1 cut(s)	506
HphI	GGTGA	3 cut(s)	263, 402, 1013
Hpy166II	GTNNAC	4 cut(s)	207, 254, 477, 666
Hpy188I	TCNGA	6 cut(s)	141, 375, 786, 952, 958, 985
Hpy188III	TCNNGA	6 cut(s)	330, 506, 611, 674, 758, 965
Hpy8I	GTNNAC	4 cut(s)	207, 254, 477, 666
HpyAV	CCTTC	5 cut(s)	19, 517, 719, 747, 905
HpyCH4III	ACNGT	2 cut(s)	344, 481
HpyCH4IV	ACGT	2 cut(s)	415, 685
HpyCH4V	TGCA	6 cut(s)	273, 494, 545, 695, 702, 996
HpyF10VI	GCNNNNNNNGC	3 cut(s)	500, 802, 850
HpyF3I	CTNAG	3 cut(s)	167, 741, 759
HpySE526I	ACGT	2 cut(s)	415, 685
Hsp92II	CATG	4 cut(s)	235, 350, 355, 561
Kpn2I	TCCGGA	1 cut(s)	505
Kzo9I	GATC	6 cut(s)	28, 161, 370, 607, 882, 961
LmnI	GCTCC	4 cut(s)	85, 508, 590, 841
Lsp1109I	GCAGC	1 cut(s)	254
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	2 cut(s)	621, 965
MaeII	ACGT	2 cut(s)	415, 685
MaeIII	GTNAC	5 cut(s)	338, 362, 565, 845, 1001
MalI	GATC	6 cut(s)	30, 163, 372, 609, 884, 963
MboI	GATC	6 cut(s)	28, 161, 370, 607, 882, 961
MboII	GAAGA	6 cut(s)	88, 304, 305, 626, 746, 881
MfeI	CAATTG	1 cut(s)	225
MflI	RGATCY	3 cut(s)	28, 370, 607
MhlI	GDGCHC	2 cut(s)	201, 774
MlsI	TGGCCA	1 cut(s)	1014
MluCI	AATT	5 cut(s)	43, 225, 357, 648, 807
MluNI	TGGCCA	1 cut(s)	1014
MlyI	GAGTC	3 cut(s)	202, 342, 974
MmeI	TCCRAC	2 cut(s)	340, 463
Mox20I	TGGCCA	1 cut(s)	1014
MroI	TCCGGA	1 cut(s)	505
MroXI	GAANNNNTTC	1 cut(s)	406
MscI	TGGCCA	1 cut(s)	1014
MseI	TTAA	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	1014
MspA1I	CMGCKG	2 cut(s)	245, 322
MspI	CCGG	1 cut(s)	506
MspR9I	CCNGG	1 cut(s)	906
MunI	CAATTG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	906
MwoI	GCNNNNNNNGC	3 cut(s)	500, 802, 850
NcoI	CCATGG	1 cut(s)	351
NdeII	GATC	6 cut(s)	28, 161, 370, 607, 882, 961
NlaIII	CATG	4 cut(s)	235, 350, 355, 561
NlaIV	GGNNCC	2 cut(s)	609, 916
NmuCI	GTSAC	4 cut(s)	362, 565, 845, 1001
PaqCI	CACCTGC	1 cut(s)	914
PdmI	GAANNNNTTC	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	953
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	3 cut(s)	202, 341, 974
PpsI	GAGTC	3 cut(s)	202, 341, 974
Ppu21I	YACGTR	1 cut(s)	686
Psp124BI	GAGCTC	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	904
PspFI	CCCAGC	1 cut(s)	941
PspGI	CCWGG	1 cut(s)	904
PspN4I	GGNNCC	2 cut(s)	609, 916
PspPI	GGNCC	2 cut(s)	915, 944
PstI	CTGCAG	1 cut(s)	697
PsuI	RGATCY	3 cut(s)	28, 370, 607
PvuII	CAGCTG	2 cut(s)	245, 322
RsaI	GTAC	2 cut(s)	665, 684
RsaNI	GTAC	2 cut(s)	664, 683
SacI	GAGCTC	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	6 cut(s)	28, 161, 370, 607, 882, 961
Sau96I	GGNCC	2 cut(s)	915, 944
SchI	GAGTC	3 cut(s)	202, 342, 974
ScrFI	CCNGG	1 cut(s)	906
SduI	GDGCHC	2 cut(s)	201, 774
SfaNI	GCATC	1 cut(s)	181
SfcI	CTRYAG	1 cut(s)	693
SinI	GGWCC	1 cut(s)	915
Sse9I	AATT	5 cut(s)	43, 225, 357, 648, 807
SsiI	CCGC	2 cut(s)	249, 561
SspI	AATATT	1 cut(s)	181
SspMI	CTAG	2 cut(s)	621, 965
SstI	GAGCTC	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	904
StyI	CCWWGG	2 cut(s)	351, 776
TaaI	ACNGT	2 cut(s)	344, 481
TaiI	ACGT	2 cut(s)	418, 688
TasI	AATT	5 cut(s)	43, 225, 357, 648, 807
TatI	WGTACW	1 cut(s)	663
TfiI	GAWTC	1 cut(s)	953
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	3 cut(s)	280, 843, 1003
TseFI	GTSAC	4 cut(s)	362, 565, 845, 1001
TseI	GCWGC	1 cut(s)	242
Tsp45I	GTSAC	4 cut(s)	362, 565, 845, 1001
TspDTI	ATGAA	2 cut(s)	30, 38
TspGWI	ACGGA	3 cut(s)	535, 549, 1008
TspRI	CASTG	3 cut(s)	280, 843, 1003
VpaK11BI	GGWCC	1 cut(s)	915
XapI	RAATTY	2 cut(s)	43, 357
XbaI	TCTAGA	1 cut(s)	964
XmnI	GAANNNNTTC	1 cut(s)	406
XspI	CTAG	2 cut(s)	621, 965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.