Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0010641

Physical Location & Seq

Genomic Coordinates Reverse (-)

21447477 .. 21451121

Gene Structure 3645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G019390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGAGGAGAGGTATGAGCCAATGAAGGATCTTGGGTCTGGCAACTTTGGGGTGGCGAGGCTGGTCAGAGACAAGAAGACCAAGGAGCTTGTGGCTGTTAAGTACATAGAGAGAGGGAAGAAGATTGATGAGAATGTTCAGAGGGAAATCATAAATCACAGATCCTTGAGGCATCCAAATATTGTCAGGTTCAAAGAGGTCTTGTTGACTCCAAGTCATTTAGCTATTGTCATGGAATATGCAGCTGGTGGTGAACTCTTTGAGAGGATATGTAGTGCTGGTAGATTTAGTGAAGATGAGGCAAGATTTTTCTTTCAGCAGCTGATATCTGGAGTCAGCTACTGTCATTCCATGGAAATTTGTCACAGGGATCTGAAACTGGAAAACACACTCTTGGACGGAAGTGCAACACCACGTCTTAAAATTTGTGACTTTGGATACTCCAAGTCTGCTATTTTGCACTCGCAACCAAAATCAACTGTCGGAACGCCTGCATACATTGCTCCGGAGGTTCTGTCACGGAAGGAATATGATGGAAAGATTGCAGATGTTTGGTCCTGTGGTGTGACACTGTATGTGATGTTGGTTGGAGCATATCCTTTTGAGGACCCTGAAGATCCTCGAAATTTTCGTAAGACCATTGAGAGAATTATGAGTGTCCAGTACACCATACCCGACTATGTACGTATTTCAGCAGACTGCAAGCACCTACTTTCTCGTGTTTTTGTTGCCAACCCTTCTAAGAGGATGACTCTTCCTGAGATAAAACAGCACCCCTGGTTTCTGAAAAATTTGGCGAGAGAGCTAATTGAGGTTGAGAAAAAAAGCTTTGCAGAAGTGGAACGTGACCACCCAACACAGAGCATTGAAGAAATAAATAGGATCATACAAGATGCAAGGACACCAGGTGAAGGTTCCAAAGGAGTTGGCCAAGCTGTTGCAGGAGCAGGACCATCTGACTCTGATGATGTAGATTTGGACTCAGAAGTTGATCTCAGTGGTGACTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

337

Amino Acids

38.08

Weight (kDa)

5.92

Isoelectric Point (pI)

34.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	5 - 261	4.4e-74	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	8 - 257	1.1e-32	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23030
fragaria_vesca	FvH4_5g20490 FvH4_5g20490 FvH4_5g20490
malus_domestica	MD04G1054400.v1.1 MD06G1046300.v1.1
prunus_persica	Prupe.5G054500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0205831
rosa_laevigata	RLG00000003352
rosa_multiflora	Rmu_sc0000076.1_g000048 Rmu_sc0008518.1_g000008
rosa_roxburghii	Rroxscaffold_3G00251960
rosa_rugosa	Rorug07G0093200 Rorug07G0093200 Rorug07G0093300
rosa_samantha	Rh7AG224800 Rh7BG220000 Rh7CG238500 Rh7DG231600
rosa_wichuraiana	Rw7G019390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	505
AclWI	GGATC	5 cut(s)	36, 156, 378, 611, 890
AcoI	YGGCCR	1 cut(s)	928
AcsI	RAATTY	4 cut(s)	357, 423, 625, 790
AcuI	CTGAAG	1 cut(s)	633
AdeI	CACNNNGTG	1 cut(s)	908
AfaI	GTAC	3 cut(s)	104, 665, 684
AfiI	CCNNNNNNNGG	1 cut(s)	911
AgsI	TTSAA	2 cut(s)	193, 869
AhdI	GACNNNNNGTC	1 cut(s)	213
AjiI	CACGTC	1 cut(s)	416
AjnI	CCWGG	2 cut(s)	776, 904
AluBI	AGCT	8 cut(s)	88, 224, 245, 322, 339, 805, 828, 935
AluI	AGCT	8 cut(s)	88, 224, 245, 322, 339, 805, 828, 935
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	5 cut(s)	36, 156, 378, 611, 890
AlwNI	CAGNNNCTG	2 cut(s)	322, 342
Aor13HI	TCCGGA	1 cut(s)	505
AoxI	GGCC	1 cut(s)	928
ApeKI	GCWGC	2 cut(s)	242, 319
ApoI	RAATTY	4 cut(s)	357, 423, 625, 790
AspS9I	GGNCC	3 cut(s)	555, 607, 950
AsuHPI	GGTGA	3 cut(s)	263, 920, 1013
AvaII	GGWCC	3 cut(s)	555, 607, 950
BalI	TGGCCA	1 cut(s)	930
BauI	CACGAG	1 cut(s)	717
BbsI	GAAGAC	1 cut(s)	83
BbvI	GCAGC	2 cut(s)	254, 331
BccI	CCATC	2 cut(s)	527, 961
BciT130I	CCWGG	2 cut(s)	778, 906
BciVI	GTATCC	1 cut(s)	431
BcoDI	GTCTC	1 cut(s)	63
BfuI	GTATCC	1 cut(s)	431
BisI	GCNGC	2 cut(s)	243, 320
BlsI	GCNGC	2 cut(s)	244, 321
Bme1390I	CCNGG	2 cut(s)	778, 906
Bme18I	GGWCC	3 cut(s)	555, 607, 950
BmeRI	GACNNNNNGTC	1 cut(s)	213
BmgBI	CACGTC	1 cut(s)	416
BmgT120I	GGNCC	3 cut(s)	555, 607, 950
BmiI	GGNNCC	2 cut(s)	609, 916
BmrFI	CCNGG	2 cut(s)	778, 906
BmsI	GCATC	2 cut(s)	181, 883
BpiI	GAAGAC	1 cut(s)	83
BplI	GAGNNNNNCTC	2 cut(s)	736, 768
BpmI	CTGGAG	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	187
BsaAI	YACGTR	1 cut(s)	686
BsaJI	CCNNGG	3 cut(s)	81, 351, 776
BsaWI	WCCGGW	1 cut(s)	505
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 500, 530
Bsc4I	CCNNNNNNNGG	1 cut(s)	911
Bse1I	ACTGG	2 cut(s)	384, 661
Bse3DI	GCAATG	1 cut(s)	498
BseAI	TCCGGA	1 cut(s)	505
BseBI	CCWGG	2 cut(s)	778, 906
BseDI	CCNNGG	3 cut(s)	81, 351, 776
BseGI	GGATG	2 cut(s)	172, 753
BseLI	CCNNNNNNNGG	1 cut(s)	911
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	3 cut(s)	750, 996, 1009
BseNI	ACTGG	2 cut(s)	384, 661
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	254, 331
BshFI	GGCC	1 cut(s)	930
BsiSI	CCGG	1 cut(s)	506
BslI	CCNNNNNNNGG	1 cut(s)	911
BsmAI	GTCTC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	930
Bsp13I	TCCGGA	1 cut(s)	505
Bsp143I	GATC	6 cut(s)	28, 161, 370, 616, 882, 991
Bsp19I	CCATGG	1 cut(s)	351
BspANI	GGCC	1 cut(s)	930
BspCNI	CTCAG	3 cut(s)	751, 995, 1008
BspEI	TCCGGA	1 cut(s)	505
BspLI	GGNNCC	2 cut(s)	609, 916
BspPI	GGATC	5 cut(s)	36, 156, 378, 611, 890
BsrDI	GCAATG	1 cut(s)	498
BsrI	ACTGG	2 cut(s)	384, 661
BssECI	CCNNGG	3 cut(s)	81, 351, 776
BssMI	GATC	6 cut(s)	28, 161, 370, 616, 882, 991
BssSI	CACGAG	1 cut(s)	717
BssT1I	CCWWGG	2 cut(s)	81, 351
Bst2BI	CACGAG	1 cut(s)	717
Bst2UI	CCWGG	2 cut(s)	778, 906
Bst4CI	ACNGT	3 cut(s)	344, 481, 573
Bst6I	CTCTTC	1 cut(s)	759
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstBAI	YACGTR	1 cut(s)	686
BstC8I	GCNNGC	2 cut(s)	492, 704
BstDEI	CTNAG	4 cut(s)	741, 759, 982, 995
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	2 cut(s)	172, 753
BstKTI	GATC	6 cut(s)	31, 164, 373, 619, 885, 994
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	6 cut(s)	28, 161, 370, 616, 882, 991
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNI	CCWGG	2 cut(s)	778, 906
BstSCI	CCNGG	2 cut(s)	776, 904
BstSNI	TACGTA	1 cut(s)	686
BstV1I	GCAGC	2 cut(s)	254, 331
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	4 cut(s)	28, 161, 370, 616
BstYI	RGATCY	4 cut(s)	28, 161, 370, 616
BsuI	GTATCC	1 cut(s)	431
BsuRI	GGCC	1 cut(s)	930
BtgI	CCRYGG	1 cut(s)	351
BtrI	CACGTC	1 cut(s)	416
BtsCI	GGATG	2 cut(s)	172, 753
BtsIMutI	CAGTG	2 cut(s)	569, 1003
Cac8I	GCNNGC	2 cut(s)	492, 704
CaiI	CAGNNNCTG	2 cut(s)	322, 342
Cfr13I	GGNCC	3 cut(s)	555, 607, 950
CsiI	ACCWGGT	1 cut(s)	904
Csp6I	GTAC	3 cut(s)	103, 664, 683
CviAII	CATG	2 cut(s)	232, 352
CviQI	GTAC	3 cut(s)	103, 664, 683
DdeI	CTNAG	4 cut(s)	741, 759, 982, 995
DpnI	GATC	6 cut(s)	30, 163, 372, 618, 884, 993
DpnII	GATC	6 cut(s)	28, 161, 370, 616, 882, 991
DraIII	CACNNNGTG	1 cut(s)	908
DriI	GACNNNNNGTC	1 cut(s)	213
EaeI	YGGCCR	1 cut(s)	928
Eam1104I	CTCTTC	1 cut(s)	759
Eam1105I	GACNNNNNGTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	759
Eco105I	TACGTA	1 cut(s)	686
Eco130I	CCWWGG	2 cut(s)	81, 351
Eco32I	GATATC	1 cut(s)	327
Eco47I	GGWCC	3 cut(s)	555, 607, 950
Eco57I	CTGAAG	1 cut(s)	633
EcoO109I	RGGNCCY	1 cut(s)	607
EcoRII	CCWGG	2 cut(s)	776, 904
EcoRV	GATATC	1 cut(s)	327
EcoT14I	CCWWGG	2 cut(s)	81, 351
ErhI	CCWWGG	2 cut(s)	81, 351
FaeI	CATG	2 cut(s)	235, 355
FatI	CATG	2 cut(s)	231, 351
Fnu4HI	GCNGC	2 cut(s)	243, 320
FokI	GGATG	2 cut(s)	159, 760
Fsp4HI	GCNGC	2 cut(s)	243, 320
GluI	GCNGC	2 cut(s)	243, 320
GsuI	CTGGAG	1 cut(s)	351
HaeIII	GGCC	1 cut(s)	930
HapII	CCGG	1 cut(s)	506
Hin1II	CATG	2 cut(s)	235, 355
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HindIII	AAGCTT	1 cut(s)	826
HinfI	GANTC	5 cut(s)	208, 333, 751, 959, 980
HpaII	CCGG	1 cut(s)	506
HphI	GGTGA	3 cut(s)	263, 920, 1013
Hpy166II	GTNNAC	3 cut(s)	207, 254, 666
Hpy188I	TCNGA	8 cut(s)	68, 141, 375, 485, 786, 958, 964, 985
Hpy188III	TCNNGA	3 cut(s)	330, 506, 758
Hpy8I	GTNNAC	3 cut(s)	207, 254, 666
HpyAV	CCTTC	4 cut(s)	19, 517, 747, 905
HpyCH4III	ACNGT	3 cut(s)	344, 481, 573
HpyCH4IV	ACGT	3 cut(s)	415, 685, 844
HpyCH4V	TGCA	9 cut(s)	242, 407, 460, 494, 545, 702, 833, 896, 941
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	4 cut(s)	741, 759, 982, 995
HpySE526I	ACGT	3 cut(s)	415, 685, 844
Hsp92II	CATG	2 cut(s)	235, 355
Kpn2I	TCCGGA	1 cut(s)	505
Kzo9I	GATC	6 cut(s)	28, 161, 370, 616, 882, 991
LmnI	GCTCC	4 cut(s)	85, 508, 590, 944
Lsp1109I	GCAGC	2 cut(s)	254, 331
LweI	GCATC	2 cut(s)	181, 883
MabI	ACCWGGT	1 cut(s)	904
MaeII	ACGT	3 cut(s)	415, 685, 844
MaeIII	GTNAC	6 cut(s)	362, 428, 516, 565, 845, 1001
MalI	GATC	6 cut(s)	30, 163, 372, 618, 884, 993
MboI	GATC	6 cut(s)	28, 161, 370, 616, 882, 991
MboII	GAAGA	7 cut(s)	88, 130, 133, 305, 626, 746, 881
MflI	RGATCY	4 cut(s)	28, 161, 370, 616
MlsI	TGGCCA	1 cut(s)	930
MluCI	AATT	6 cut(s)	357, 423, 625, 648, 790, 807
MluNI	TGGCCA	1 cut(s)	930
MlyI	GAGTC	5 cut(s)	202, 342, 745, 953, 974
MmeI	TCCRAC	2 cut(s)	463, 568
Mox20I	TGGCCA	1 cut(s)	930
MroI	TCCGGA	1 cut(s)	505
MscI	TGGCCA	1 cut(s)	930
MseI	TTAA	2 cut(s)	99, 420
Msp20I	TGGCCA	1 cut(s)	930
MspA1I	CMGCKG	2 cut(s)	245, 322
MspI	CCGG	1 cut(s)	506
MspR9I	CCNGG	2 cut(s)	778, 906
MvaI	CCWGG	2 cut(s)	778, 906
MwoI	GCNNNNNNNGC	1 cut(s)	500
NcoI	CCATGG	1 cut(s)	351
NdeII	GATC	6 cut(s)	28, 161, 370, 616, 882, 991
NlaIII	CATG	2 cut(s)	235, 355
NlaIV	GGNNCC	2 cut(s)	609, 916
NmuCI	GTSAC	6 cut(s)	362, 428, 516, 565, 845, 1001
PcsI	WCGNNNNNNNCGW	1 cut(s)	628
PkrI	GCNGC	2 cut(s)	244, 321
PleI	GAGTC	5 cut(s)	202, 341, 745, 953, 974
PpsI	GAGTC	5 cut(s)	202, 341, 745, 953, 974
Ppu21I	YACGTR	1 cut(s)	686
PpuMI	RGGWCCY	1 cut(s)	607
Psp5II	RGGWCCY	1 cut(s)	607
Psp6I	CCWGG	2 cut(s)	776, 904
PspGI	CCWGG	2 cut(s)	776, 904
PspN4I	GGNNCC	2 cut(s)	609, 916
PspPI	GGNCC	3 cut(s)	555, 607, 950
PspPPI	RGGWCCY	1 cut(s)	607
PstNI	CAGNNNCTG	2 cut(s)	322, 342
PsuI	RGATCY	4 cut(s)	28, 161, 370, 616
PvuII	CAGCTG	2 cut(s)	245, 322
RsaI	GTAC	3 cut(s)	104, 665, 684
RsaNI	GTAC	3 cut(s)	103, 664, 683
SaqAI	TTAA	2 cut(s)	99, 420
SatI	GCNGC	2 cut(s)	243, 320
Sau3AI	GATC	6 cut(s)	28, 161, 370, 616, 882, 991
Sau96I	GGNCC	3 cut(s)	555, 607, 950
SchI	GAGTC	5 cut(s)	202, 342, 745, 953, 974
ScrFI	CCNGG	2 cut(s)	778, 906
SexAI	ACCWGGT	1 cut(s)	904
SfaNI	GCATC	2 cut(s)	181, 883
SinI	GGWCC	3 cut(s)	555, 607, 950
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
SnaBI	TACGTA	1 cut(s)	686
Sse9I	AATT	6 cut(s)	357, 423, 625, 648, 790, 807
SspI	AATATT	1 cut(s)	181
StyD4I	CCNGG	2 cut(s)	776, 904
StyI	CCWWGG	2 cut(s)	81, 351
TaaI	ACNGT	3 cut(s)	344, 481, 573
TaiI	ACGT	3 cut(s)	418, 688, 847
TaqI	TCGA	1 cut(s)	622
TasI	AATT	6 cut(s)	357, 423, 625, 648, 790, 807
TatI	WGTACW	2 cut(s)	102, 663
Tru1I	TTAA	2 cut(s)	99, 420
Tru9I	TTAA	2 cut(s)	99, 420
TscAI	CASTG	2 cut(s)	576, 1003
TseFI	GTSAC	6 cut(s)	362, 428, 516, 565, 845, 1001
TseI	GCWGC	2 cut(s)	242, 319
Tsp45I	GTSAC	6 cut(s)	362, 428, 516, 565, 845, 1001
TspDTI	ATGAA	1 cut(s)	38
TspGWI	ACGGA	2 cut(s)	414, 535
TspRI	CASTG	2 cut(s)	576, 1003
VpaK11BI	GGWCC	3 cut(s)	555, 607, 950
XapI	RAATTY	4 cut(s)	357, 423, 625, 790
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.