Rorug07G0093200
ERF Family

Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0003640
Physical Location & Seq
Forward (+)
7305327 .. 7310709
5383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0093200.1

Sequence Viewer

Length: 1824 bp
ATGGGGAAAGAGAACCAGAACCAGAACCAGAACCAGACGACGTCGGCTATGGAGATCGACAATCAAAAGGCGAACACCTCCGATCAGATCGGTCCTAAATTCTCAATCAACGTTTTACAGCTGTTGAAATCTGCTCAGATGCAGCATGGATTGCGCCACGGGGATTACACTCGTTATCGGAGGTATTGCACTGCAAGGTTGAGGAGGCTGTATAAGTCATTGAAGTTCACTCACGGCCGTGGCAAGTACAACCGCCGAGCAATAACCGAATCAACTGTTACTGAAGTGAGGTTTCTCCATGTGGTTCTATATACGGCAGAGAGGGCTTGGAGCCATGCCATGGAAAAAAGGCAAGTTCTGGATGGTCCAAATGCTCGTCAACGAATCTATCTGATTGGTAGGCTGAGGAAGGCAGTAAAATGGGCTACTCTTTTTGCACAGTTGTCTGCAATCAAGGGAGATTCTAGAACTTCCTTAGAAGCTGAGGCTTATGCCTCTTTTATGAAAGGGAACCTGTTGTTTGAACAAGATCGAAATTGGGACACAGCATTACTGAACTTCAAAAGTGCCAGGGCGGTTTATGAGGAACTTGCGAAATATGGAGACCTGGAGAATCAAGTTTTATGCCGTGAGCGTGTTGAGGAATTAGAACCTAGTATCCGGTACTGTCTACACAAGATTGGAGAGTCAAATCTACAAGGCTCTGAACTTCTACATATTGGTGAGATGGAAGGACCTGCTTTGGACCTCTTCAAGGCTAAATTGGAGGCTGTTATGGATGAGGCAAGATCTCAACAGGCTGCCTCCATGACAGAATTTCATTGGCTAGGCCATAGATTTCCAATTTCAAATGCAAAAACTCGGGTTTCTATTTTAAAAGCTCAAGACTTGGAGAAAGATGTACTTGGTTCATCAGCTAATTCACTCCCTACAGAGAAAAGGCTAGCCATTTTTGACAAAGTTTTCACTGCATACCATGAGGCAAGGAGCTGCATTCGCAGTGATTTGGTCAGTGCAGGTAGTTCTGAAAATGTCAAAGATGACTTGAATGGCCTTGATAAAGCTGTTAGTGCTGTATTAGGACAACGGACCATTGAGCGTAACCTACTTTTGGTTAGCATTGCAAAGAGCAAACTCACTAAGCGACGAGATGACAAAAATGAGAGAACTACGAAGCCAGAAGAGCTTGTCCGCTTGTATGATCTCCTATTACAGAATACAGCTGACCTTTCAGATTTAGTCAGTTCGGGACGAGAAAAAACATCAGAGGAAGTCGCATTTGCTGCAGAATGTGAGCTTAAAAGTTTGGCTTTCCGAGCAGAAAGGTGTTTCTTTTTGGGTAGATCATACAGTTTGGCTGGTAAGAGGGTGGAAGCATATGCATTGTATTGCCGTGCTCGCACACTTGCTGAGGATGCCCTGCAAAAATTTAAAGCCGTTGATAATGCTGATCAGGTGGTGATCAAAGAGTTGAAGCTATTGTGCGATGAATGCAGATCTAACAGTTGTATAGAGCATGCAACAGGAATCATGGAGGAGCTGAAGGCTCCTGAAAATCTCTCACAACAGATTTCTAACATCCATATATCTGGAGTTGACACAAAGGACAAATTCCTCCTTGAGAAACTTGAGGTCTACGAATCTGCAGTTGGTGATTCAAATGTGAGAAGTGCTGCGCGAATTGAAGCTTTCCCTCCTCCCTTCCAAACAATTCCTCGCAATCCAATTGTTCTAGACCTTGCCTATGATCATATTGAGTTCCCATCTCTTCTAAATAGGATGAAGAAAGAAACAAAGGGCTTCATTAGTAGGTTTTGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAN_4 Pro_isomerase

Protein Analysis

607

Amino Acids

69.04

Weight (kDa)

8.9

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP68 PF16969 51 - 585 1.5e-159 RNA-binding signal recognition particle 68
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 44
Acc36I ACCTGC 2 cut(s) 745, 1007
AccB7I CCANNNNNTGG 1 cut(s) 340
AccI GTMKAC 2 cut(s) 670, 1635
AccII CGCG 1 cut(s) 1678
AciI CCGC 3 cut(s) 253, 575, 1192
AclI AACGTT 1 cut(s) 111
AcoI YGGCCR 1 cut(s) 235
AcsI RAATTY 4 cut(s) 98, 815, 1427, 1610
AcuI CTGAAG 2 cut(s) 303, 1562
AcyI GRCGYC 1 cut(s) 41
AfaI GTAC 3 cut(s) 248, 665, 903
AfiI CCNNNNNNNGG 3 cut(s) 340, 754, 1111
AjnI CCWGG 2 cut(s) 569, 606
AjuI GAANNNNNNNTTGG 2 cut(s) 1632, 1664
AleI CACNNNNGTG 1 cut(s) 237
AloI GAACNNNNNNTCC 2 cut(s) 642, 674
Alw21I GWGCWC 1 cut(s) 1399
Alw26I GTCTC 1 cut(s) 597
Ama87I CYCGRG 1 cut(s) 861
AoxI GGCC 3 cut(s) 235, 829, 1051
ApeKI GCWGC 5 cut(s) 142, 800, 990, 1283, 1673
ApoI RAATTY 4 cut(s) 98, 815, 1427, 1610
AspLEI GCGC 2 cut(s) 156, 1678
AspS9I GGNCC 5 cut(s) 92, 365, 734, 745, 1089
AsuHPI GGTGA 3 cut(s) 734, 1471, 1664
AsuNHI GCTAGC 1 cut(s) 943
AvaI CYCGRG 1 cut(s) 861
AvaII GGWCC 5 cut(s) 92, 365, 734, 745, 1089
Bbv12I GWGCWC 1 cut(s) 1399
BbvCI CCTCAGC 3 cut(s) 404, 483, 1410
BbvI GCAGC 5 cut(s) 154, 787, 977, 1270, 1660
BccI CCATC 3 cut(s) 356, 721, 1771
BceAI ACGGC 6 cut(s) 222, 250, 330, 612, 1377, 1421
BciT130I CCWGG 2 cut(s) 571, 608
BciVI GTATCC 1 cut(s) 668
BclI TGATCA 3 cut(s) 1450, 1461, 1747
BcoDI GTCTC 1 cut(s) 597
BfaI CTAG 5 cut(s) 465, 654, 827, 944, 1733
BfmI CTRYAG 3 cut(s) 930, 1284, 1644
BfuAI ACCTGC 2 cut(s) 745, 1007
BfuI GTATCC 1 cut(s) 668
BglII AGATCT 2 cut(s) 788, 1496
BisI GCNGC 5 cut(s) 143, 801, 991, 1284, 1674
BlsI GCNGC 5 cut(s) 144, 802, 992, 1285, 1675
Bme1390I CCNGG 2 cut(s) 571, 608
Bme18I GGWCC 5 cut(s) 92, 365, 734, 745, 1089
BmeT110I CYCGRG 1 cut(s) 861
BmgT120I GGNCC 5 cut(s) 92, 365, 734, 745, 1089
BmiI GGNNCC 3 cut(s) 332, 512, 1548
BmrFI CCNGG 2 cut(s) 571, 608
BmsI GCATC 2 cut(s) 129, 1405
BmtI GCTAGC 1 cut(s) 947
BpmI CTGGAG 2 cut(s) 629, 1611
Bpu10I CCTNAGC 3 cut(s) 404, 483, 1410
BpuEI CTTGAG 3 cut(s) 867, 1640, 1649
BsaHI GRCGYC 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 597
BsaJI CCNNGG 4 cut(s) 157, 238, 339, 570
BsaWI WCCGGW 1 cut(s) 660
Bsc4I CCNNNNNNNGG 3 cut(s) 340, 754, 1111
Bse3DI GCAATG 1 cut(s) 1119
BseBI CCWGG 2 cut(s) 571, 608
BseDI CCNNGG 4 cut(s) 157, 238, 339, 570
BseGI GGATG 5 cut(s) 367, 784, 1420, 1578, 1785
BseLI CCNNNNNNNGG 3 cut(s) 340, 754, 1111
BseMI GCAATG 1 cut(s) 1119
BseMII CTCAG 4 cut(s) 149, 395, 474, 1401
BseRI GAGGAG 3 cut(s) 217, 1550, 1686
BseX3I CGGCCG 1 cut(s) 235
BseXI GCAGC 5 cut(s) 154, 787, 977, 1270, 1660
BsgI GTGCAG 1 cut(s) 1035
Bsh1236I CGCG 1 cut(s) 1678
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 3 cut(s) 237, 831, 1053
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 1399
BsiHKCI CYCGRG 1 cut(s) 861
BsiSI CCGG 1 cut(s) 661
BslFI GGGAC 2 cut(s) 554, 1263
BslI CCNNNNNNNGG 3 cut(s) 340, 754, 1111
BsmAI GTCTC 1 cut(s) 597
BsmFI GGGAC 2 cut(s) 554, 1263
BsmI GAATGC 2 cut(s) 993, 1496
BsnI GGCC 3 cut(s) 237, 831, 1053
Bso31I GGTCTC 1 cut(s) 597
BsoBI CYCGRG 1 cut(s) 861
Bsp1286I GDGCHC 1 cut(s) 1399
Bsp19I CCATGG 1 cut(s) 339
BspACI CCGC 3 cut(s) 253, 575, 1192
BspANI GGCC 3 cut(s) 237, 831, 1053
BspCNI CTCAG 4 cut(s) 148, 396, 475, 1402
BspFNI CGCG 1 cut(s) 1678
BspLI GGNNCC 3 cut(s) 332, 512, 1548
BspMAI CTGCAG 2 cut(s) 1288, 1648
BspMI ACCTGC 2 cut(s) 745, 1007
BspOI GCTAGC 1 cut(s) 947
BspQI GCTCTTC 1 cut(s) 1176
BspTNI GGTCTC 1 cut(s) 597
BsrDI GCAATG 1 cut(s) 1119
BssECI CCNNGG 4 cut(s) 157, 238, 339, 570
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 339
Bst2UI CCWGG 2 cut(s) 571, 608
Bst4CI ACNGT 5 cut(s) 277, 441, 668, 1352, 1505
Bst6I CTCTTC 3 cut(s) 755, 1176, 1773
BstACI GRCGYC 1 cut(s) 41
BstAPI GCANNNNNTGC 2 cut(s) 151, 1283
BstC8I GCNNGC 3 cut(s) 945, 1399, 1518
BstDEI CTNAG 6 cut(s) 135, 404, 475, 483, 1140, 1410
BstDSI CCRYGG 3 cut(s) 157, 238, 339
BstENI CCTNNNNNAGG 1 cut(s) 752
BstF5I GGATG 5 cut(s) 367, 784, 1420, 1578, 1785
BstFNI CGCG 1 cut(s) 1678
BstHHI GCGC 2 cut(s) 156, 1678
BstMAI GTCTC 1 cut(s) 597
BstMCI CGRYCG 1 cut(s) 238
BstNI CCWGG 2 cut(s) 571, 608
BstNSI RCATGY 1 cut(s) 1520
BstSCI CCNGG 2 cut(s) 569, 606
BstSFI CTRYAG 3 cut(s) 930, 1284, 1644
BstUI CGCG 1 cut(s) 1678
BstV1I GCAGC 5 cut(s) 154, 787, 977, 1270, 1660
BstX2I RGATCY 2 cut(s) 788, 1496
BstXI CCANNNNNNTGG 1 cut(s) 1589
BstYI RGATCY 2 cut(s) 788, 1496
BstZI CGGCCG 1 cut(s) 235
BsuI GTATCC 1 cut(s) 668
BsuRI GGCC 3 cut(s) 237, 831, 1053
BtgI CCRYGG 3 cut(s) 157, 238, 339
BtgZI GCGATG 1 cut(s) 1500
BtsCI GGATG 5 cut(s) 367, 784, 1420, 1578, 1785
BtsI GCAGTG 3 cut(s) 189, 966, 1006
BtsIMutI CAGTG 4 cut(s) 189, 966, 1006, 1018
BveI ACCTGC 2 cut(s) 745, 1007
Cac8I GCNNGC 3 cut(s) 945, 1399, 1518
CfoI GCGC 2 cut(s) 156, 1678
Cfr13I GGNCC 5 cut(s) 92, 365, 734, 745, 1089
Csp6I GTAC 3 cut(s) 247, 664, 902
CviAII CATG 8 cut(s) 146, 299, 335, 340, 808, 977, 1517, 1531
CviQI GTAC 3 cut(s) 247, 664, 902
DdeI CTNAG 6 cut(s) 135, 404, 475, 483, 1140, 1410
DraI TTTAAA 2 cut(s) 876, 1432
EaeI YGGCCR 1 cut(s) 235
EagI CGGCCG 1 cut(s) 235
Eam1104I CTCTTC 3 cut(s) 755, 1176, 1773
EarI CTCTTC 3 cut(s) 755, 1176, 1773
EclXI CGGCCG 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 339
Eco31I GGTCTC 1 cut(s) 597
Eco47I GGWCC 5 cut(s) 92, 365, 734, 745, 1089
Eco52I CGGCCG 1 cut(s) 235
Eco57I CTGAAG 2 cut(s) 303, 1562
Eco88I CYCGRG 1 cut(s) 861
EcoNI CCTNNNNNAGG 1 cut(s) 752
EcoO109I RGGNCCY 1 cut(s) 734
EcoRII CCWGG 2 cut(s) 569, 606
EcoT14I CCWWGG 1 cut(s) 339
EcoT22I ATGCAT 1 cut(s) 1384
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 8 cut(s) 149, 302, 338, 343, 811, 980, 1520, 1534
FalI AAGNNNNNCTT 4 cut(s) 888, 920, 1294, 1326
FaqI GGGAC 2 cut(s) 554, 1263
FatI CATG 8 cut(s) 145, 298, 334, 339, 807, 976, 1516, 1530
FauNDI CATATG 1 cut(s) 1378
FbaI TGATCA 3 cut(s) 1450, 1461, 1747
FblI GTMKAC 2 cut(s) 670, 1635
Fnu4HI GCNGC 5 cut(s) 143, 801, 991, 1284, 1674
FokI GGATG 5 cut(s) 374, 791, 1427, 1565, 1792
Fsp4HI GCNGC 5 cut(s) 143, 801, 991, 1284, 1674
FspBI CTAG 5 cut(s) 465, 654, 827, 944, 1733
GlaI GCGC 2 cut(s) 155, 1677
GluI GCNGC 5 cut(s) 143, 801, 991, 1284, 1674
GsuI CTGGAG 2 cut(s) 629, 1611
HaeIII GGCC 3 cut(s) 237, 831, 1053
HapII CCGG 1 cut(s) 661
HhaI GCGC 2 cut(s) 156, 1678
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 8 cut(s) 149, 302, 338, 343, 811, 980, 1520, 1534
Hin6I GCGC 2 cut(s) 154, 1676
HinP1I GCGC 2 cut(s) 154, 1676
HincII GTYRAC 2 cut(s) 380, 1597
HindII GTYRAC 2 cut(s) 380, 1597
HindIII AAGCTT 1 cut(s) 1686
HinfI GANTC 8 cut(s) 269, 384, 461, 613, 686, 1527, 1640, 1655
HpaII CCGG 1 cut(s) 661
HphI GGTGA 3 cut(s) 734, 1471, 1664
Hpy166II GTNNAC 5 cut(s) 228, 380, 671, 1597, 1636
Hpy188III TCNNGA 7 cut(s) 359, 465, 884, 1248, 1550, 1590, 1733
Hpy8I GTNNAC 5 cut(s) 228, 380, 671, 1597, 1636
Hpy99I CGWCG 3 cut(s) 43, 46, 1149
HpyAV CCTTC 4 cut(s) 403, 725, 1537, 1711
HpyCH4III ACNGT 5 cut(s) 277, 441, 668, 1352, 1505
HpyCH4IV ACGT 2 cut(s) 41, 111
HpyF3I CTNAG 6 cut(s) 135, 404, 475, 483, 1140, 1410
HpySE526I ACGT 2 cut(s) 41, 111
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 8 cut(s) 149, 302, 338, 343, 811, 980, 1520, 1534
HspAI GCGC 2 cut(s) 154, 1676
Ksp22I TGATCA 3 cut(s) 1450, 1461, 1747
LguI GCTCTTC 1 cut(s) 1176
LmnI GCTCC 4 cut(s) 330, 987, 1537, 1552
Lsp1109I GCAGC 5 cut(s) 154, 787, 977, 1270, 1660
LweI GCATC 2 cut(s) 129, 1405
MaeI CTAG 5 cut(s) 465, 654, 827, 944, 1733
MaeII ACGT 2 cut(s) 41, 111
MaeIII GTNAC 2 cut(s) 277, 1100
MboII GAAGA 4 cut(s) 742, 1193, 1760, 1795
MfeI CAATTG 1 cut(s) 1725
MflI RGATCY 2 cut(s) 788, 1496
MhlI GDGCHC 1 cut(s) 1399
MlyI GAGTC 1 cut(s) 695
Mph1103I ATGCAT 1 cut(s) 1384
MseI TTAA 3 cut(s) 875, 1299, 1431
MslI CAYNNNNRTG 2 cut(s) 237, 720
MspA1I CMGCKG 2 cut(s) 121, 1223
MspI CCGG 1 cut(s) 661
MspR9I CCNGG 2 cut(s) 571, 608
MunI CAATTG 1 cut(s) 1725
Mva1269I GAATGC 2 cut(s) 993, 1496
MvaI CCWGG 2 cut(s) 571, 608
MvnI CGCG 1 cut(s) 1678
NcoI CCATGG 1 cut(s) 339
NdeI CATATG 1 cut(s) 1378
NheI GCTAGC 1 cut(s) 943
NlaIII CATG 8 cut(s) 149, 302, 338, 343, 811, 980, 1520, 1534
NlaIV GGNNCC 3 cut(s) 332, 512, 1548
NmeAIII GCCGAG 1 cut(s) 281
NsiI ATGCAT 1 cut(s) 1384
NspI RCATGY 1 cut(s) 1520
OliI CACNNNNGTG 1 cut(s) 237
PaeI GCATGC 1 cut(s) 1520
PciSI GCTCTTC 1 cut(s) 1176
PctI GAATGC 2 cut(s) 993, 1496
PfeI GAWTC 7 cut(s) 269, 384, 461, 613, 1527, 1640, 1655
PflFI GACNNNGTC 1 cut(s) 40
PflMI CCANNNNNTGG 1 cut(s) 340
PkrI GCNGC 5 cut(s) 144, 802, 992, 1285, 1675
PleI GAGTC 1 cut(s) 694
PpsI GAGTC 1 cut(s) 694
PpuMI RGGWCCY 1 cut(s) 734
Psp1406I AACGTT 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 734
Psp6I CCWGG 2 cut(s) 569, 606
PspGI CCWGG 2 cut(s) 569, 606
PspN4I GGNNCC 3 cut(s) 332, 512, 1548
PspPI GGNCC 5 cut(s) 92, 365, 734, 745, 1089
PspPPI RGGWCCY 1 cut(s) 734
PstI CTGCAG 2 cut(s) 1288, 1648
PsuI RGATCY 2 cut(s) 788, 1496
PsyI GACNNNGTC 1 cut(s) 40
PvuII CAGCTG 2 cut(s) 121, 1223
RsaI GTAC 3 cut(s) 248, 665, 903
RsaNI GTAC 3 cut(s) 247, 664, 902
RseI CAYNNNNRTG 2 cut(s) 237, 720
SapI GCTCTTC 1 cut(s) 1176
SaqAI TTAA 3 cut(s) 875, 1299, 1431
SatI GCNGC 5 cut(s) 143, 801, 991, 1284, 1674
Sau96I GGNCC 5 cut(s) 92, 365, 734, 745, 1089
SchI GAGTC 1 cut(s) 695
ScrFI CCNGG 2 cut(s) 571, 608
SduI GDGCHC 1 cut(s) 1399
SfaNI GCATC 2 cut(s) 129, 1405
SfcI CTRYAG 3 cut(s) 930, 1284, 1644
SinI GGWCC 5 cut(s) 92, 365, 734, 745, 1089
SmiMI CAYNNNNRTG 2 cut(s) 237, 720
SmlI CTYRAG 3 cut(s) 882, 1619, 1628
SmoI CTYRAG 3 cut(s) 882, 1619, 1628
SphI GCATGC 1 cut(s) 1520
SsiI CCGC 3 cut(s) 253, 575, 1192
SspMI CTAG 5 cut(s) 465, 654, 827, 944, 1733
StyD4I CCNGG 2 cut(s) 569, 606
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 5 cut(s) 277, 441, 668, 1352, 1505
TaiI ACGT 2 cut(s) 44, 114
TaqI TCGA 2 cut(s) 57, 532
TaqII GACCGA 1 cut(s) 80
TatI WGTACW 2 cut(s) 246, 901
TfiI GAWTC 7 cut(s) 269, 384, 461, 613, 1527, 1640, 1655
Tru1I TTAA 3 cut(s) 875, 1299, 1431
Tru9I TTAA 3 cut(s) 875, 1299, 1431
TscAI CASTG 4 cut(s) 196, 973, 1006, 1018
TseI GCWGC 5 cut(s) 142, 800, 990, 1283, 1673
TspDTI ATGAA 6 cut(s) 518, 809, 900, 1503, 1792, 1796
TspGWI ACGGA 1 cut(s) 1102
TspRI CASTG 4 cut(s) 196, 973, 1006, 1018
Tth111I GACNNNGTC 1 cut(s) 40
Van91I CCANNNNNTGG 1 cut(s) 340
VpaK11BI GGWCC 5 cut(s) 92, 365, 734, 745, 1089
XagI CCTNNNNNAGG 1 cut(s) 752
XapI RAATTY 4 cut(s) 98, 815, 1427, 1610
XbaI TCTAGA 2 cut(s) 464, 1732
XceI RCATGY 1 cut(s) 1520
XmiI GTMKAC 2 cut(s) 670, 1635
XspI CTAG 5 cut(s) 465, 654, 827, 944, 1733
ZraI GACGTC 1 cut(s) 42
Zsp2I ATGCAT 1 cut(s) 1384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.