Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003640

Physical Location & Seq

Genomic Coordinates Reverse (-)

21440749 .. 21444904

Gene Structure 4156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G019380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCATTGGTGGAGCAGAGTGGGGAGAAGGGAGAGAGTGATAGGGGGTGTTGCAGAGGGATTGAGAATTTGGAGCTGTGGGGTGCAGCTGTGAAGTGGGGTTCTGAGTTTAAGTTCAATTCTTCTGAGGAGTGTTGCCAGGCTTGTAAAGCAATGTGTACAGGGACTGATGGGCCTTGTTTGTGTGATAGTTGGGTCTTCTGTGGGAAGAAGGAGGCTTGTGGCTCTAAATTTGGTGAGTGCTGGTTGAAGAAGCAGAAGGATACATTGTCCCCTCAGCGCCAGGAAGCAGGGGAGAAAGTTAGTTGGACATCTGGAATCATCTTTGGGAGAGGAGAGGGCATTGTTGGCTTGGAAACACAATATGGGACTCTACATATAAAACTTTTCCCTGACTGTGCCCCTCATTCTGTGGCCTACATTCTTGAGTTGTTGGAATTGCGTCATTGTGCAGGCTGCCAATTTATCGTGCAGAGAGCCGTGGGGAATCATGGGACTCAGAAGGAAACCACATTAAAGATGCTCCTTTCGGCCCTCCTTTTGCACTGGTTCAGGGAACACTGGAAGCCCAAGGAGCCACATTTAAGAAGTTTCCAACTGAAGTTTGCCCAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAN_4 Pro_isomerase

Protein Analysis

205

Amino Acids

22.93

Weight (kDa)

7.49

Isoelectric Point (pI)

35.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17070
fragaria_vesca	FvH4_5g20480 FvH4_5g20480 FvH4_7g09211
malus_domestica	MD06G1046500.v1.1 MD07G1096900.v1.1 MD07G1097200.v1.1
prunus_persica	Prupe.2G121100_v2.0.a1 Prupe.2G121100_v2.0.a1 Prupe.2G121100_v2.0.a1 Prupe.5G054800_v2.0.a1
pyrus_communis	pycom06g03920 pycom07g08000
rosa_chinensis	RchiOBHm_Chr1g0345271 RchiOBHm_Chr7g0205801
rosa_laevigata	RLG00000003353 RLG00000028842
rosa_multiflora	Rmu_sc0000076.1_g000049 Rmu_sc0002329.1_g000010 Rmu_sc0008518.1_g000009 Rmu_sc0011244.1_g000002
rosa_roxburghii	Rroxscaffold_3G00251970 Rroxscaffold_4G00309140
rosa_rugosa	Rorug01G0177100 Rorug07G0093200
rosa_samantha	Rh1AG195200 Rh1BG161300 Rh1CG179600 Rh1DG191700 Rh7AG224700 Rh7BG219900 Rh7CG238400 Rh7DG231400
rosa_wichuraiana	Rw1G016080 Rw7G019380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	67, 230
AfaI	GTAC	1 cut(s)	160
AgsI	TTSAA	2 cut(s)	118, 250
AjnI	CCWGG	2 cut(s)	138, 282
AluBI	AGCT	2 cut(s)	76, 89
AluI	AGCT	2 cut(s)	76, 89
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	3 cut(s)	173, 414, 531
ApeKI	GCWGC	2 cut(s)	86, 456
ApoI	RAATTY	2 cut(s)	67, 230
AspLEI	GCGC	1 cut(s)	282
AspS9I	GGNCC	2 cut(s)	173, 532
AsuHPI	GGTGA	1 cut(s)	248
BaeGI	GKGCMC	1 cut(s)	403
BbsI	GAAGAC	1 cut(s)	190
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	98, 443
BccI	CCATC	1 cut(s)	164
BceAI	ACGGC	1 cut(s)	464
BciT130I	CCWGG	2 cut(s)	140, 284
BciVI	GTATCC	1 cut(s)	256
BfoI	RGCGCY	1 cut(s)	283
BfuI	GTATCC	1 cut(s)	256
BisI	GCNGC	2 cut(s)	87, 457
BlsI	GCNGC	2 cut(s)	88, 458
Bme1390I	CCNGG	2 cut(s)	140, 284
BmgT120I	GGNCC	2 cut(s)	173, 532
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	2 cut(s)	140, 284
BmsI	GCATC	1 cut(s)	510
BpiI	GAAGAC	1 cut(s)	190
Bpu10I	CCTNAGC	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	446
BsaJI	CCNNGG	2 cut(s)	480, 570
Bse1I	ACTGG	2 cut(s)	551, 566
Bse3DI	GCAATG	1 cut(s)	159
BseBI	CCWGG	2 cut(s)	140, 284
BseDI	CCNNGG	2 cut(s)	480, 570
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	4 cut(s)	96, 117, 290, 512
BseNI	ACTGG	2 cut(s)	551, 566
BseRI	GAGGAG	2 cut(s)	143, 348
BseSI	GKGCMC	1 cut(s)	403
BseXI	GCAGC	2 cut(s)	98, 443
BsgI	GTGCAG	3 cut(s)	105, 471, 491
BshFI	GGCC	3 cut(s)	175, 416, 533
BslFI	GGGAC	4 cut(s)	178, 256, 382, 508
BsmFI	GGGAC	4 cut(s)	178, 256, 382, 508
BsnI	GGCC	3 cut(s)	175, 416, 533
Bsp1286I	GDGCHC	1 cut(s)	403
Bsp1407I	TGTACA	1 cut(s)	158
BspANI	GGCC	3 cut(s)	175, 416, 533
BspCNI	CTCAG	4 cut(s)	97, 118, 289, 511
BspLI	GGNNCC	1 cut(s)	576
BsrDI	GCAATG	1 cut(s)	159
BsrGI	TGTACA	1 cut(s)	158
BsrI	ACTGG	2 cut(s)	551, 566
BssECI	CCNNGG	2 cut(s)	480, 570
BssT1I	CCWWGG	1 cut(s)	570
Bst2UI	CCWGG	2 cut(s)	140, 284
Bst4CI	ACNGT	1 cut(s)	398
BstAUI	TGTACA	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	454
BstDEI	CTNAG	4 cut(s)	105, 126, 276, 498
BstDSI	CCRYGG	1 cut(s)	480
BstH2I	RGCGCY	1 cut(s)	283
BstHHI	GCGC	1 cut(s)	282
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 348, 574
BstNI	CCWGG	2 cut(s)	140, 284
BstSCI	CCNGG	2 cut(s)	138, 282
BstSLI	GKGCMC	1 cut(s)	403
BstV1I	GCAGC	2 cut(s)	98, 443
BstV2I	GAAGAC	1 cut(s)	190
BsuI	GTATCC	1 cut(s)	256
BsuRI	GGCC	3 cut(s)	175, 416, 533
BtgI	CCRYGG	1 cut(s)	480
BtsIMutI	CAGTG	2 cut(s)	544, 559
Cac8I	GCNNGC	1 cut(s)	454
CaiI	CAGNNNCTG	1 cut(s)	167
CfoI	GCGC	1 cut(s)	282
Cfr13I	GGNCC	2 cut(s)	173, 532
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	1 cut(s)	491
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	4 cut(s)	105, 126, 276, 498
Eco130I	CCWWGG	1 cut(s)	570
EcoRII	CCWGG	2 cut(s)	138, 282
EcoT14I	CCWWGG	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	570
FaeI	CATG	1 cut(s)	494
FaiI	YATR	4 cut(s)	366, 378, 380, 492
FaqI	GGGAC	4 cut(s)	178, 256, 382, 508
FatI	CATG	1 cut(s)	490
Fnu4HI	GCNGC	2 cut(s)	87, 457
Fsp4HI	GCNGC	2 cut(s)	87, 457
GlaI	GCGC	1 cut(s)	281
GluI	GCNGC	2 cut(s)	87, 457
HaeII	RGCGCY	1 cut(s)	283
HaeIII	GGCC	3 cut(s)	175, 416, 533
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	1 cut(s)	282
Hin1II	CATG	1 cut(s)	494
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HinfI	GANTC	4 cut(s)	318, 370, 487, 496
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	3 cut(s)	106, 127, 501
Hpy188III	TCNNGA	2 cut(s)	315, 425
Hpy8I	GTNNAC	1 cut(s)	159
HpyAV	CCTTC	4 cut(s)	22, 205, 253, 496
HpyCH4III	ACNGT	1 cut(s)	398
HpyCH4V	TGCA	5 cut(s)	54, 86, 452, 472, 544
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 348, 574
HpyF3I	CTNAG	4 cut(s)	105, 126, 276, 498
Hsp92II	CATG	1 cut(s)	494
HspAI	GCGC	1 cut(s)	280
LmnI	GCTCC	4 cut(s)	13, 73, 528, 574
Lsp1109I	GCAGC	2 cut(s)	98, 443
LweI	GCATC	1 cut(s)	510
MboII	GAAGA	4 cut(s)	114, 190, 220, 262
MhlI	GDGCHC	1 cut(s)	403
MluCI	AATT	5 cut(s)	67, 118, 230, 437, 461
MlyI	GAGTC	2 cut(s)	364, 490
MmeI	TCCRAC	2 cut(s)	287, 414
MnlI	CCTC	8 cut(s)	50, 121, 208, 285, 326, 331, 414, 545
MseI	TTAA	4 cut(s)	111, 515, 584, 616
MspA1I	CMGCKG	1 cut(s)	89
MspR9I	CCNGG	2 cut(s)	140, 284
MvaI	CCWGG	2 cut(s)	140, 284
MwoI	GCNNNNNNNGC	3 cut(s)	149, 348, 574
NlaIII	CATG	1 cut(s)	494
NlaIV	GGNNCC	1 cut(s)	576
PfeI	GAWTC	2 cut(s)	318, 487
PkrI	GCNGC	2 cut(s)	88, 458
PleI	GAGTC	2 cut(s)	364, 490
PpsI	GAGTC	2 cut(s)	364, 490
Psp6I	CCWGG	2 cut(s)	138, 282
PspGI	CCWGG	2 cut(s)	138, 282
PspN4I	GGNNCC	1 cut(s)	576
PspPI	GGNCC	2 cut(s)	173, 532
PstNI	CAGNNNCTG	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	89
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
SaqAI	TTAA	4 cut(s)	111, 515, 584, 616
SatI	GCNGC	2 cut(s)	87, 457
Sau96I	GGNCC	2 cut(s)	173, 532
SchI	GAGTC	2 cut(s)	364, 490
ScrFI	CCNGG	2 cut(s)	140, 284
SduI	GDGCHC	1 cut(s)	403
SetI	ASST	3 cut(s)	78, 91, 616
SfaNI	GCATC	1 cut(s)	510
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	5 cut(s)	67, 118, 230, 437, 461
StyD4I	CCNGG	2 cut(s)	138, 282
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	1 cut(s)	398
TasI	AATT	5 cut(s)	67, 118, 230, 437, 461
TatI	WGTACW	1 cut(s)	158
TfiI	GAWTC	2 cut(s)	318, 487
Tru1I	TTAA	4 cut(s)	111, 515, 584, 616
Tru9I	TTAA	4 cut(s)	111, 515, 584, 616
TscAI	CASTG	2 cut(s)	551, 566
TseI	GCWGC	2 cut(s)	86, 456
TspRI	CASTG	2 cut(s)	551, 566
XapI	RAATTY	2 cut(s)	67, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.