Rroxscaffold_3G00251970

Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003640
Physical Location & Seq
Forward (+)
45958445 .. 45962410
3966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00251970.1

Sequence Viewer

Length: 1017 bp
ATGGGTCGGAGGCAGAACGACCCAGAAGCCACCCATTACTCCACTCCCTTCCTCCTCTGGGTGGGTCTGGTCTCCTGTGCTCTGGTCTACGCTCTTCTCTCTGTGGTGCTTAAACCCAATGCGCCTGAGCTCGGGTCAATGGCGTTGGTGGAACAGAGTGGGGAGAAGGGAGAGAGTGATAGGGGGTGTTGCAGAGGAATTGAGAATTTGGAGCTGTGGGGTGCTGCTGTGAAGTGGGGTTCAGAGTTTAAGTTCAATTCTTCTGAGGAGTGTTGCCAGGCTTGTAAAGCAATGTGTACTGGGACTGATGGGCCTTGTTTGTGTGATAGTTGGGTCTTCTGTGGGAAGAAGGAGGCTTGTGGCTCTAAATTTGGTGAGTGCTGGTTGAAGAAGCAGAAGGATACATTGTCCCCTCAGCGCCAGGAAACAGGGGAGAAAGTTAGTTGGACATCTGGAATCATCTTTGGGAGAGGAGAGGGCATTGTTGGCTTGGAAACACAATATGGGACTCTACATATAAAACTTTTCCCTGACTGTGCCCCTCATTCTGTAGCCTACATTCTTGAGTTGTTGGAATTGCGTCATTGTGCAGGCTGCCAATTCTATCGTGCAGAGAGCCGTGGGGAATCATGGGACTCAGAAGGAAACCACATTAAAGATGCTCCTTTCGGCCCTCCTTTTGCACTGGTTCAGGGAACACTGGAAGCCCAAGGAGCCACATTTAAGAAGTTTCCAACTGAAGTTTGCCCAACCTTAAGAAGGGGTTCGGTAGCATGGATTGGCTCTGGTCCTGAATTTTTCGTAAGCCTTGCGAACCATGAAGAGTGGAAAAAAGAATACACTGTCTTTGCTTCTGTTCTTCCAGAGGACATGTACATCGCTGAGAAAATCACTCAGCTTCCCACCACCCCTGATGTTTGGAACAATATCAATGTGTCAGTGTTGGAGAAGCCTGTTCCTTTGAAGTTGCGAAGAATCAAGACAAGCCATGGGGATCTCACCAGAAACGGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAN_4 Pro_isomerase

Protein Analysis

338

Amino Acids

37.38

Weight (kDa)

6.04

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 162 - 314 1e-10 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 87
AclWI GGATC 1 cut(s) 1002
AcsI RAATTY 3 cut(s) 205, 368, 794
AcuI CTGAAG 1 cut(s) 759
AfaI GTAC 2 cut(s) 298, 875
AfiI CCNNNNNNNGG 4 cut(s) 58, 61, 131, 759
AflII CTTAAG 1 cut(s) 754
AflIII ACRYGT 1 cut(s) 870
AgsI TTSAA 3 cut(s) 256, 388, 964
AjnI CCWGG 2 cut(s) 276, 420
AluBI AGCT 3 cut(s) 130, 214, 898
AluI AGCT 3 cut(s) 130, 214, 898
Alw21I GWGCWC 2 cut(s) 82, 132
Alw26I GTCTC 1 cut(s) 76
AlwI GGATC 1 cut(s) 1002
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 2 cut(s) 311, 670
ApeKI GCWGC 2 cut(s) 224, 594
ApoI RAATTY 3 cut(s) 205, 368, 794
Asp700I GAANNNNTTC 1 cut(s) 763
AspLEI GCGC 2 cut(s) 124, 420
AspS9I GGNCC 3 cut(s) 311, 671, 788
AsuHPI GGTGA 2 cut(s) 386, 991
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 1 cut(s) 788
BaeGI GKGCMC 1 cut(s) 541
BanII GRGCYC 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 328
Bbv12I GWGCWC 2 cut(s) 82, 132
BbvCI CCTCAGC 1 cut(s) 414
BbvI GCAGC 2 cut(s) 211, 581
BccI CCATC 1 cut(s) 302
BceAI ACGGC 1 cut(s) 603
BciT130I CCWGG 2 cut(s) 278, 422
BciVI GTATCC 1 cut(s) 394
BcoDI GTCTC 1 cut(s) 76
BfmI CTRYAG 1 cut(s) 549
BfoI RGCGCY 1 cut(s) 421
BfrI CTTAAG 1 cut(s) 754
BfuI GTATCC 1 cut(s) 394
BisI GCNGC 2 cut(s) 225, 595
BlsI GCNGC 2 cut(s) 226, 596
Bme1390I CCNGG 2 cut(s) 278, 422
Bme18I GGWCC 1 cut(s) 788
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 3 cut(s) 311, 671, 788
BmiI GGNNCC 1 cut(s) 715
BmrFI CCNGG 2 cut(s) 278, 422
BmrI ACTGGG 1 cut(s) 309
BmsI GCATC 1 cut(s) 649
BmuI ACTGGG 1 cut(s) 309
BpiI GAAGAC 1 cut(s) 328
Bpu10I CCTNAGC 2 cut(s) 126, 414
BpuEI CTTGAG 1 cut(s) 584
BsaI GGTCTC 1 cut(s) 76
BsaJI CCNNGG 3 cut(s) 619, 709, 988
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 61, 131, 759
Bse1I ACTGG 3 cut(s) 304, 690, 705
Bse3DI GCAATG 1 cut(s) 297
BseBI CCWGG 2 cut(s) 278, 422
BseDI CCNNGG 3 cut(s) 619, 709, 988
BseLI CCNNNNNNNGG 4 cut(s) 58, 61, 131, 759
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 6 cut(s) 117, 255, 428, 651, 873, 908
BseNI ACTGG 3 cut(s) 304, 690, 705
BseRI GAGGAG 3 cut(s) 44, 281, 486
BseSI GKGCMC 1 cut(s) 541
BseXI GCAGC 2 cut(s) 211, 581
BsgI GTGCAG 2 cut(s) 609, 630
BshFI GGCC 2 cut(s) 313, 672
BsiHKAI GWGCWC 2 cut(s) 82, 132
BsiHKCI CYCGRG 1 cut(s) 131
BslFI GGGAC 4 cut(s) 316, 394, 520, 647
BslI CCNNNNNNNGG 4 cut(s) 58, 61, 131, 759
BsmAI GTCTC 1 cut(s) 76
BsmFI GGGAC 4 cut(s) 316, 394, 520, 647
BsnI GGCC 2 cut(s) 313, 672
Bso31I GGTCTC 1 cut(s) 76
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 3 cut(s) 82, 132, 541
Bsp1407I TGTACA 1 cut(s) 873
Bsp143I GATC 1 cut(s) 994
Bsp19I CCATGG 1 cut(s) 988
BspANI GGCC 2 cut(s) 313, 672
BspCNI CTCAG 6 cut(s) 118, 256, 427, 650, 874, 907
BspLI GGNNCC 1 cut(s) 715
BspPI GGATC 1 cut(s) 1002
BspQI GCTCTTC 1 cut(s) 99
BspTI CTTAAG 1 cut(s) 754
BspTNI GGTCTC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 297
BsrGI TGTACA 1 cut(s) 873
BsrI ACTGG 3 cut(s) 304, 690, 705
BssECI CCNNGG 3 cut(s) 619, 709, 988
BssMI GATC 1 cut(s) 994
BssT1I CCWWGG 2 cut(s) 709, 988
Bst2UI CCWGG 2 cut(s) 278, 422
Bst4CI ACNGT 2 cut(s) 536, 844
Bst6I CTCTTC 2 cut(s) 99, 816
BstAFI CTTAAG 1 cut(s) 754
BstAUI TGTACA 1 cut(s) 873
BstC8I GCNNGC 1 cut(s) 592
BstDEI CTNAG 6 cut(s) 126, 264, 414, 637, 882, 894
BstDSI CCRYGG 2 cut(s) 619, 988
BstENI CCTNNNNNAGG 1 cut(s) 757
BstH2I RGCGCY 1 cut(s) 421
BstHHI GCGC 2 cut(s) 124, 420
BstKTI GATC 1 cut(s) 997
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 1 cut(s) 994
BstMWI GCNNNNNNNGC 3 cut(s) 287, 486, 713
BstNI CCWGG 2 cut(s) 278, 422
BstNSI RCATGY 1 cut(s) 874
BstSCI CCNGG 2 cut(s) 276, 420
BstSFI CTRYAG 1 cut(s) 549
BstSLI GKGCMC 1 cut(s) 541
BstV1I GCAGC 2 cut(s) 211, 581
BstV2I GAAGAC 1 cut(s) 328
BstX2I RGATCY 1 cut(s) 994
BstYI RGATCY 1 cut(s) 994
BsuI GTATCC 1 cut(s) 394
BsuRI GGCC 2 cut(s) 313, 672
BtgI CCRYGG 2 cut(s) 619, 988
BtgZI GCGATG 1 cut(s) 862
BtsIMutI CAGTG 4 cut(s) 683, 698, 840, 945
Cac8I GCNNGC 1 cut(s) 592
CfoI GCGC 2 cut(s) 124, 420
Cfr13I GGNCC 3 cut(s) 311, 671, 788
CseI GACGC 1 cut(s) 569
Csp6I GTAC 2 cut(s) 297, 874
CviAII CATG 5 cut(s) 630, 774, 818, 871, 989
CviQI GTAC 2 cut(s) 297, 874
DdeI CTNAG 6 cut(s) 126, 264, 414, 637, 882, 894
DpnI GATC 1 cut(s) 996
DpnII GATC 1 cut(s) 994
Eam1104I CTCTTC 2 cut(s) 99, 816
EarI CTCTTC 2 cut(s) 99, 816
Ecl136II GAGCTC 1 cut(s) 130
Eco130I CCWWGG 2 cut(s) 709, 988
Eco24I GRGCYC 1 cut(s) 132
Eco31I GGTCTC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 788
Eco53kI GAGCTC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 759
Eco88I CYCGRG 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 130
EcoNI CCTNNNNNAGG 1 cut(s) 757
EcoRII CCWGG 2 cut(s) 276, 420
EcoT14I CCWWGG 2 cut(s) 709, 988
EcoT38I GRGCYC 1 cut(s) 132
ErhI CCWWGG 2 cut(s) 709, 988
FaeI CATG 5 cut(s) 633, 777, 821, 874, 992
FaiI YATR 8 cut(s) 504, 516, 518, 631, 775, 819, 872, 990
FaqI GGGAC 4 cut(s) 316, 394, 520, 647
FatI CATG 5 cut(s) 629, 773, 817, 870, 988
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 225, 595
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 2 cut(s) 225, 595
GlaI GCGC 2 cut(s) 123, 419
GluI GCNGC 2 cut(s) 225, 595
HaeII RGCGCY 1 cut(s) 421
HaeIII GGCC 2 cut(s) 313, 672
HgaI GACGC 1 cut(s) 569
HhaI GCGC 2 cut(s) 124, 420
Hin1II CATG 5 cut(s) 633, 777, 821, 874, 992
Hin6I GCGC 2 cut(s) 122, 418
HinP1I GCGC 2 cut(s) 122, 418
HinfI GANTC 5 cut(s) 456, 508, 626, 635, 975
HphI GGTGA 2 cut(s) 386, 991
Hpy166II GTNNAC 2 cut(s) 88, 297
Hpy188I TCNGA 4 cut(s) 9, 244, 265, 640
Hpy188III TCNNGA 5 cut(s) 453, 563, 791, 863, 979
Hpy8I GTNNAC 2 cut(s) 88, 297
HpyAV CCTTC 6 cut(s) 58, 160, 343, 391, 635, 753
HpyCH4III ACNGT 2 cut(s) 536, 844
HpyCH4V TGCA 4 cut(s) 192, 590, 611, 683
HpyF10VI GCNNNNNNNGC 3 cut(s) 287, 486, 713
HpyF3I CTNAG 6 cut(s) 126, 264, 414, 637, 882, 894
Hsp92II CATG 5 cut(s) 633, 777, 821, 874, 992
HspAI GCGC 2 cut(s) 122, 418
Kzo9I GATC 1 cut(s) 994
LguI GCTCTTC 1 cut(s) 99
LmnI GCTCC 3 cut(s) 211, 667, 713
Lsp1109I GCAGC 2 cut(s) 211, 581
LweI GCATC 1 cut(s) 649
MalI GATC 1 cut(s) 996
MboI GATC 1 cut(s) 994
MboII GAAGA 8 cut(s) 86, 252, 328, 358, 400, 833, 851, 984
MflI RGATCY 1 cut(s) 994
MhlI GDGCHC 3 cut(s) 82, 132, 541
MluCI AATT 7 cut(s) 198, 205, 256, 368, 575, 599, 794
MlyI GAGTC 2 cut(s) 502, 629
MmeI TCCRAC 4 cut(s) 425, 552, 758, 924
MroXI GAANNNNTTC 1 cut(s) 763
MseI TTAA 5 cut(s) 111, 249, 654, 723, 755
MspCI CTTAAG 1 cut(s) 754
MspR9I CCNGG 2 cut(s) 278, 422
MvaI CCWGG 2 cut(s) 278, 422
MwoI GCNNNNNNNGC 3 cut(s) 287, 486, 713
NcoI CCATGG 1 cut(s) 988
NdeII GATC 1 cut(s) 994
NlaIII CATG 5 cut(s) 633, 777, 821, 874, 992
NlaIV GGNNCC 1 cut(s) 715
NspI RCATGY 1 cut(s) 874
PciI ACATGT 1 cut(s) 870
PciSI GCTCTTC 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 763
PfeI GAWTC 3 cut(s) 456, 626, 975
PkrI GCNGC 2 cut(s) 226, 596
PleI GAGTC 2 cut(s) 502, 629
PpsI GAGTC 2 cut(s) 502, 629
PscI ACATGT 1 cut(s) 870
Psp124BI GAGCTC 1 cut(s) 132
Psp6I CCWGG 2 cut(s) 276, 420
PspGI CCWGG 2 cut(s) 276, 420
PspN4I GGNNCC 1 cut(s) 715
PspPI GGNCC 3 cut(s) 311, 671, 788
PsuI RGATCY 1 cut(s) 994
RsaI GTAC 2 cut(s) 298, 875
RsaNI GTAC 2 cut(s) 297, 874
SacI GAGCTC 1 cut(s) 132
SapI GCTCTTC 1 cut(s) 99
SaqAI TTAA 5 cut(s) 111, 249, 654, 723, 755
SatI GCNGC 2 cut(s) 225, 595
Sau3AI GATC 1 cut(s) 994
Sau96I GGNCC 3 cut(s) 311, 671, 788
SchI GAGTC 2 cut(s) 502, 629
ScrFI CCNGG 2 cut(s) 278, 422
SduI GDGCHC 3 cut(s) 82, 132, 541
SetI ASST 4 cut(s) 132, 216, 755, 900
SfaNI GCATC 1 cut(s) 649
SfcI CTRYAG 1 cut(s) 549
SinI GGWCC 1 cut(s) 788
SmlI CTYRAG 2 cut(s) 563, 754
SmoI CTYRAG 2 cut(s) 563, 754
Sse9I AATT 7 cut(s) 198, 205, 256, 368, 575, 599, 794
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 2 cut(s) 276, 420
StyI CCWWGG 2 cut(s) 709, 988
TaaI ACNGT 2 cut(s) 536, 844
TasI AATT 7 cut(s) 198, 205, 256, 368, 575, 599, 794
TatI WGTACW 2 cut(s) 296, 873
TfiI GAWTC 3 cut(s) 456, 626, 975
Tru1I TTAA 5 cut(s) 111, 249, 654, 723, 755
Tru9I TTAA 5 cut(s) 111, 249, 654, 723, 755
TscAI CASTG 4 cut(s) 690, 705, 847, 945
TseI GCWGC 2 cut(s) 224, 594
TspDTI ATGAA 1 cut(s) 834
TspRI CASTG 4 cut(s) 690, 705, 847, 945
Vha464I CTTAAG 1 cut(s) 754
VpaK11BI GGWCC 1 cut(s) 788
XagI CCTNNNNNAGG 1 cut(s) 757
XapI RAATTY 3 cut(s) 205, 368, 794
XceI RCATGY 1 cut(s) 874
XmiI GTMKAC 1 cut(s) 87
XmnI GAANNNNTTC 1 cut(s) 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.