RLG00000028842

Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003640
Physical Location & Seq
Reverse (-)
29074658 .. 29078670
4013 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028842

Sequence Viewer

Length: 1077 bp
ATGGGTCGCCGGCAGACGGAGTCCGACCTCGGCCGTTTTGCACTTCTGGCCCTTCTCCTCATGGGTGCAATCTCCTGCTGCATGCTCTACCTGTTCATCTCTATGGTCTTGAAACCCAATAGTGCCACATTTGCTCCAATTTCAGAGCTGGGTGAGAATGGCGGTGAGGTTGTTTTGGCGGGTAAAGAAGAAGGTGAGTGTTGTAGAGGGATCGAGCATTTGGAGCTTTGGGGTGATGCTGTGAAATGGGGGGCTGAGTTTAAGGTCAATTCTTCAAAGGAGTGCTGCATGGCTTGTAAGGATATGTGTGGGGATCCAAATGGGCCGTGTTTGTGTGATTCTTGGGTGTTTTGTGGGGATAGAGAGGCTTGCGGAGGTAAGTTTGGTGAGTGTTGGTTAAAAAAACAAAAGGATACATTGGAGCCTGATCGGCGAGACTCAGGGGATCTAGTTATGTGGACTTCTGGACATATATTTGGGAAAGGAGAGGGTATCGTTGGCTTGGAAACAGAATATGGGATTCTTCGTATAAAGCTCTTTGTTGATTGTGCCCCACATTCTGTATTCTATATTCTTGAGCTGTTGCGAGAGCATTATTGTGGAGGTTGCCAATTTTATCGTGCAGAAAGCCGTGGAAGCTTTTGGGACTCCATAGGAAATCATGTCCAAAATGCTCCCTTTGGCCCTCCTTTTGGACTTGTACAAGGAACACTTGAAGCCCACGGGATTATATTTAAGGAGATTCCAAGAGAGGGTAAACACAACATCAGAAGGGGATCAGTTGCCTGGGTTGGTTCAGGTCCAGGTTTCTTTATCAGCCTGGCCAACCATTTTGAGTGGAAAAAAGCATACACCGTGTTTGGTTCTGTTCTTCCCGAAGACATGGAAATTGTAGAAAGAATAGCACAGCTTCCAACCAAGCAAGAGCCTACTCTTGGTTGTGGAAGCACTGGTGGTAGTGGCGCTTCCTCTAATAAGATATCTAGACATGGTGCTTTTGATGATGGTTCGGTGGTGGTGGTCCTTGTGTTGCCATTGTTTATTACAAGTACAACAACTGGTCTGCGTGTGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAN_4 Pro_isomerase

Protein Analysis

359

Amino Acids

39.08

Weight (kDa)

5.78

Isoelectric Point (pI)

40.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 166 - 309 7.3e-12 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 162, 179, 372
AclWI GGATC 5 cut(s) 218, 308, 321, 453, 784
AcoI YGGCCR 2 cut(s) 31, 822
AfaI GTAC 2 cut(s) 702, 1051
AfiI CCNNNNNNNGG 4 cut(s) 16, 692, 752, 935
AgsI TTSAA 3 cut(s) 112, 276, 716
AjnI CCWGG 3 cut(s) 785, 802, 819
AluBI AGCT 6 cut(s) 148, 226, 535, 580, 639, 910
AluI AGCT 6 cut(s) 148, 226, 535, 580, 639, 910
Alw26I GTCTC 1 cut(s) 429
AlwI GGATC 5 cut(s) 218, 308, 321, 453, 784
AoxI GGCC 5 cut(s) 31, 48, 323, 682, 822
ApeKI GCWGC 2 cut(s) 78, 285
AspLEI GCGC 1 cut(s) 965
AspS9I GGNCC 5 cut(s) 49, 323, 683, 800, 1021
AsuHPI GGTGA 5 cut(s) 164, 176, 206, 245, 398
AvaII GGWCC 2 cut(s) 800, 1021
BaeGI GKGCMC 1 cut(s) 553
BalI TGGCCA 1 cut(s) 824
BamHI GGATCC 1 cut(s) 313
BarI GAAGNNNNNNTAC 2 cut(s) 949, 981
BbsI GAAGAC 1 cut(s) 885
BbvI GCAGC 2 cut(s) 65, 272
BccI CCATC 1 cut(s) 998
BceAI ACGGC 3 cut(s) 18, 310, 615
BciT130I CCWGG 3 cut(s) 787, 804, 821
BciVI GTATCC 1 cut(s) 406
BcoDI GTCTC 1 cut(s) 429
BfaI CTAG 2 cut(s) 449, 984
BfoI RGCGCY 1 cut(s) 966
BfuI GTATCC 1 cut(s) 406
BglI GCCNNNNNGGC 1 cut(s) 430
BisI GCNGC 2 cut(s) 79, 286
BlsI GCNGC 2 cut(s) 80, 287
Bme1390I CCNGG 3 cut(s) 787, 804, 821
Bme18I GGWCC 2 cut(s) 800, 1021
BmgT120I GGNCC 5 cut(s) 49, 323, 683, 800, 1021
BmiI GGNNCC 2 cut(s) 315, 423
BmrFI CCNGG 3 cut(s) 787, 804, 821
BmsI GCATC 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 885
BpuEI CTTGAG 1 cut(s) 596
BsaJI CCNNGG 4 cut(s) 28, 631, 721, 786
BsaXI ACNNNNNCTCC 2 cut(s) 118, 148
Bsc4I CCNNNNNNNGG 4 cut(s) 16, 692, 752, 935
Bse118I RCCGGY 1 cut(s) 9
Bse1I ACTGG 2 cut(s) 955, 1063
BseBI CCWGG 3 cut(s) 787, 804, 821
BseDI CCNNGG 4 cut(s) 28, 631, 721, 786
BseLI CCNNNNNNNGG 4 cut(s) 16, 692, 752, 935
BseMII CTCAG 2 cut(s) 246, 453
BseNI ACTGG 2 cut(s) 955, 1063
BseRI GAGGAG 1 cut(s) 47
BseSI GKGCMC 1 cut(s) 553
BseX3I CGGCCG 1 cut(s) 31
BseXI GCAGC 2 cut(s) 65, 272
BseYI CCCAGC 1 cut(s) 148
BsgI GTGCAG 1 cut(s) 642
Bsh1285I CGRYCG 1 cut(s) 34
BshFI GGCC 5 cut(s) 33, 50, 325, 684, 824
BsiEI CGRYCG 1 cut(s) 34
BsiSI CCGG 1 cut(s) 10
BslFI GGGAC 1 cut(s) 659
BslI CCNNNNNNNGG 4 cut(s) 16, 692, 752, 935
BsmAI GTCTC 1 cut(s) 429
BsmFI GGGAC 1 cut(s) 659
BsnI GGCC 5 cut(s) 33, 50, 325, 684, 824
Bsp1286I GDGCHC 1 cut(s) 553
Bsp1407I TGTACA 1 cut(s) 700
Bsp143I GATC 5 cut(s) 210, 313, 427, 445, 776
BspACI CCGC 3 cut(s) 162, 179, 372
BspANI GGCC 5 cut(s) 33, 50, 325, 684, 824
BspCNI CTCAG 2 cut(s) 247, 452
BspLI GGNNCC 2 cut(s) 315, 423
BspPI GGATC 5 cut(s) 218, 308, 321, 453, 784
BsrFI RCCGGY 1 cut(s) 9
BsrGI TGTACA 1 cut(s) 700
BsrI ACTGG 2 cut(s) 955, 1063
BssAI RCCGGY 1 cut(s) 9
BssECI CCNNGG 4 cut(s) 28, 631, 721, 786
BssMI GATC 5 cut(s) 210, 313, 427, 445, 776
Bst2UI CCWGG 3 cut(s) 787, 804, 821
Bst4CI ACNGT 1 cut(s) 856
BstAUI TGTACA 1 cut(s) 700
BstC8I GCNNGC 3 cut(s) 11, 83, 370
BstDEI CTNAG 2 cut(s) 255, 439
BstDSI CCRYGG 2 cut(s) 631, 721
BstH2I RGCGCY 1 cut(s) 966
BstHHI GCGC 1 cut(s) 965
BstKTI GATC 5 cut(s) 213, 316, 430, 448, 779
BstMAI GTCTC 1 cut(s) 429
BstMBI GATC 5 cut(s) 210, 313, 427, 445, 776
BstMCI CGRYCG 1 cut(s) 34
BstMWI GCNNNNNNNGC 5 cut(s) 47, 131, 223, 430, 636
BstNI CCWGG 3 cut(s) 787, 804, 821
BstNSI RCATGY 1 cut(s) 85
BstSCI CCNGG 3 cut(s) 785, 802, 819
BstSLI GKGCMC 1 cut(s) 553
BstV1I GCAGC 2 cut(s) 65, 272
BstV2I GAAGAC 1 cut(s) 885
BstX2I RGATCY 2 cut(s) 313, 445
BstYI RGATCY 2 cut(s) 313, 445
BstZI CGGCCG 1 cut(s) 31
BsuI GTATCC 1 cut(s) 406
BsuRI GGCC 5 cut(s) 33, 50, 325, 684, 824
BtgI CCRYGG 2 cut(s) 631, 721
BtsIMutI CAGTG 1 cut(s) 948
Cac8I GCNNGC 3 cut(s) 11, 83, 370
CfoI GCGC 1 cut(s) 965
Cfr10I RCCGGY 1 cut(s) 9
Cfr13I GGNCC 5 cut(s) 49, 323, 683, 800, 1021
Csp6I GTAC 2 cut(s) 701, 1050
CviAII CATG 6 cut(s) 61, 82, 289, 662, 883, 989
CviQI GTAC 2 cut(s) 701, 1050
DdeI CTNAG 2 cut(s) 255, 439
DpnI GATC 5 cut(s) 212, 315, 429, 447, 778
DpnII GATC 5 cut(s) 210, 313, 427, 445, 776
EaeI YGGCCR 2 cut(s) 31, 822
EagI CGGCCG 1 cut(s) 31
EclXI CGGCCG 1 cut(s) 31
Eco32I GATATC 1 cut(s) 981
Eco47I GGWCC 2 cut(s) 800, 1021
Eco52I CGGCCG 1 cut(s) 31
EcoRII CCWGG 3 cut(s) 785, 802, 819
EcoRV GATATC 1 cut(s) 981
FaeI CATG 6 cut(s) 64, 85, 292, 665, 886, 992
FalI AAGNNNNNCTT 2 cut(s) 696, 728
FaqI GGGAC 1 cut(s) 659
FatI CATG 6 cut(s) 60, 81, 288, 661, 882, 988
FauI CCCGC 1 cut(s) 172
Fnu4HI GCNGC 2 cut(s) 79, 286
Fsp4HI GCNGC 2 cut(s) 79, 286
FspBI CTAG 2 cut(s) 449, 984
GlaI GCGC 1 cut(s) 964
GluI GCNGC 2 cut(s) 79, 286
GsaI CCCAGC 1 cut(s) 152
HaeII RGCGCY 1 cut(s) 966
HaeIII GGCC 5 cut(s) 33, 50, 325, 684, 824
HapII CCGG 1 cut(s) 10
HhaI GCGC 1 cut(s) 965
Hin1II CATG 6 cut(s) 64, 85, 292, 665, 886, 992
Hin6I GCGC 1 cut(s) 963
HinP1I GCGC 1 cut(s) 963
HindIII AAGCTT 1 cut(s) 637
HinfI GANTC 6 cut(s) 20, 338, 437, 520, 647, 742
HpaII CCGG 1 cut(s) 10
HphI GGTGA 5 cut(s) 164, 176, 206, 245, 398
Hpy166II GTNNAC 2 cut(s) 459, 758
Hpy188I TCNGA 3 cut(s) 25, 145, 770
Hpy188III TCNNGA 5 cut(s) 109, 465, 575, 875, 984
Hpy8I GTNNAC 2 cut(s) 459, 758
HpyAV CCTTC 3 cut(s) 62, 185, 765
HpyCH4III ACNGT 1 cut(s) 856
HpyCH4V TGCA 5 cut(s) 41, 68, 81, 288, 623
HpyF10VI GCNNNNNNNGC 5 cut(s) 47, 131, 223, 430, 636
HpyF3I CTNAG 2 cut(s) 255, 439
Hsp92II CATG 6 cut(s) 64, 85, 292, 665, 886, 992
HspAI GCGC 1 cut(s) 963
KroI GCCGGC 1 cut(s) 9
KroNI GCCGGC 1 cut(s) 11
Kzo9I GATC 5 cut(s) 210, 313, 427, 445, 776
LmnI GCTCC 4 cut(s) 139, 223, 421, 679
Lsp1109I GCAGC 2 cut(s) 65, 272
LweI GCATC 1 cut(s) 226
MaeI CTAG 2 cut(s) 449, 984
MalI GATC 5 cut(s) 212, 315, 429, 447, 778
MboI GATC 5 cut(s) 210, 313, 427, 445, 776
MboII GAAGA 5 cut(s) 200, 264, 515, 863, 890
MflI RGATCY 2 cut(s) 313, 445
MhlI GDGCHC 1 cut(s) 553
MlsI TGGCCA 1 cut(s) 824
MluCI AATT 4 cut(s) 138, 268, 611, 888
MluNI TGGCCA 1 cut(s) 824
MlyI GAGTC 3 cut(s) 29, 431, 641
MmeI TCCRAC 2 cut(s) 48, 938
Mox20I TGGCCA 1 cut(s) 824
MroNI GCCGGC 1 cut(s) 9
MscI TGGCCA 1 cut(s) 824
MseI TTAA 3 cut(s) 261, 398, 735
MslI CAYNNNNRTG 2 cut(s) 101, 597
Msp20I TGGCCA 1 cut(s) 824
MspI CCGG 1 cut(s) 10
MspR9I CCNGG 3 cut(s) 787, 804, 821
MvaI CCWGG 3 cut(s) 787, 804, 821
MwoI GCNNNNNNNGC 5 cut(s) 47, 131, 223, 430, 636
NaeI GCCGGC 1 cut(s) 11
NdeII GATC 5 cut(s) 210, 313, 427, 445, 776
NgoMIV GCCGGC 1 cut(s) 9
NlaIII CATG 6 cut(s) 64, 85, 292, 665, 886, 992
NlaIV GGNNCC 2 cut(s) 315, 423
NmeAIII GCCGAG 1 cut(s) 9
NspI RCATGY 1 cut(s) 85
PaeI GCATGC 1 cut(s) 85
PdiI GCCGGC 1 cut(s) 11
PfeI GAWTC 3 cut(s) 338, 520, 742
PflFI GACNNNGTC 1 cut(s) 19
PkrI GCNGC 2 cut(s) 80, 287
PleI GAGTC 3 cut(s) 28, 431, 641
PpsI GAGTC 3 cut(s) 28, 431, 641
Psp6I CCWGG 3 cut(s) 785, 802, 819
PspFI CCCAGC 1 cut(s) 148
PspGI CCWGG 3 cut(s) 785, 802, 819
PspN4I GGNNCC 2 cut(s) 315, 423
PspPI GGNCC 5 cut(s) 49, 323, 683, 800, 1021
PsuI RGATCY 2 cut(s) 313, 445
PsyI GACNNNGTC 1 cut(s) 19
RsaI GTAC 2 cut(s) 702, 1051
RsaNI GTAC 2 cut(s) 701, 1050
RseI CAYNNNNRTG 2 cut(s) 101, 597
SaqAI TTAA 3 cut(s) 261, 398, 735
SatI GCNGC 2 cut(s) 79, 286
Sau3AI GATC 5 cut(s) 210, 313, 427, 445, 776
Sau96I GGNCC 5 cut(s) 49, 323, 683, 800, 1021
SchI GAGTC 3 cut(s) 29, 431, 641
ScrFI CCNGG 3 cut(s) 787, 804, 821
SduI GDGCHC 1 cut(s) 553
SfaNI GCATC 1 cut(s) 226
SinI GGWCC 2 cut(s) 800, 1021
SmiMI CAYNNNNRTG 2 cut(s) 101, 597
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
SphI GCATGC 1 cut(s) 85
Sse9I AATT 4 cut(s) 138, 268, 611, 888
SsiI CCGC 3 cut(s) 162, 179, 372
SspMI CTAG 2 cut(s) 449, 984
StyD4I CCNGG 3 cut(s) 785, 802, 819
TaaI ACNGT 1 cut(s) 856
TaqI TCGA 1 cut(s) 213
TasI AATT 4 cut(s) 138, 268, 611, 888
TatI WGTACW 2 cut(s) 700, 1049
TfiI GAWTC 3 cut(s) 338, 520, 742
Tru1I TTAA 3 cut(s) 261, 398, 735
Tru9I TTAA 3 cut(s) 261, 398, 735
TscAI CASTG 1 cut(s) 955
TseI GCWGC 2 cut(s) 78, 285
TspDTI ATGAA 1 cut(s) 85
TspGWI ACGGA 1 cut(s) 32
TspRI CASTG 1 cut(s) 955
Tth111I GACNNNGTC 1 cut(s) 19
VpaK11BI GGWCC 2 cut(s) 800, 1021
XbaI TCTAGA 1 cut(s) 983
XceI RCATGY 1 cut(s) 85
XspI CTAG 2 cut(s) 449, 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.