pycom07g08000

Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0003640
Physical Location & Seq
Forward (+)
7407878 .. 7411263
3386 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g08000.1

Sequence Viewer

Length: 1329 bp
ATGTATTGCATTACCAGAACAAAAATAAGAGAGGATATAAAGGTTCCATACGTAGACGTGTCATCGACCAAACGGTTTTACTCTACTTCCATCCGTCGTTTTCACTCCCCGTCTTGTTCGTGCTCTCAATGCCTTGCCAACATCATCAGATTTTCCAAAACCAACATCACGAACCCGACGAATTATCTCAAAAACAATTTCCGGGTCTTTCATTTCAGTCCAAAATCTCAGATGGGTCGTCGGCAGAGCGACTCAGAACTCGGCCGTCTCGCACTTCTGGCCCTTTTCCTGATGGGCGCAATATTCTGCTGCATGGTGTACCTGTTCCTCGCTGTGGCCTCAAAACCCAGCGGCATAACAACAGCTGATTCGGTTTCGGAATTCGGAGACGTTGGATGGAGGAGTGGAGAAGAAGATGGAGAATGCTGCAGAGGGATTGCGAATTTGGAGCTCTGGGGTGATGCTGTGAAATGGGGTTCTGAGTTTAAGGTGAATTCTTCTAAAGAGTGCTGCATGGCTTGTAAGGATATGTGTGGGGATCGAGATGGGCATTGTTTGTGTGACAGTTGGGTGTTTTGTGGGGATAGAGAGGCTTGTGGACTTAGATATGGTGAGTGTTGGTTAAAGAAACAAAAGGATACCTTGGACCCTGATCGGAAAGACTCAGGTGATCTGATTGCATGGACTTCTGGACTTGTCTTTGGAAAAGGAGAGGGGTATTCTTCATTGTTCTCCGTCAACCTCCTTCACAATCGACGGGATTTCTTTTCTTATAAGTTGTTATGTTCATGTAATCTTTTTAAACTAAACTGTATGATTACCGCATCTAAACTGTCATTCGGTCTTAAATTTATGCAGCTCCGTCCTGATTGTGCCCCTCATTCTGTTGCCTACATTCTTGAGCTGTTGCAAGTGCCCCATTATGCAGGCTGCCAATTTTATCGTGCAGAAAACCGGGGAAGCTTTTGGGACTCACAAGGAAACCATGTAAAAAATGCTCCGTTTGGCCCGCCTTTCGCGCTTATACAAGGAACGCTTGCAGCTCACGGGTTCGTATTTAAGGAGATTCCGGCAGAGGTGTCTCGCACCATCAGAAGAGGATCGGTTGCCTGGATTGGTTCCGGTCCAGAATTCTTCATCAGCCTAGCCAACCATTTTGAGTGGAAAAAAGCTTACACTGTTTTTGGTTCCGTTCTTCCTGAAGACATGGAAATCACCGAGAAACTTGCCCAGCTTCCGACCAAACAAGAGGTCTGGAGCAACATCAATGTCTCCGTCTTGGAGAGTCCTGTCGCTTTATGGTTCCGAAGAATCAAGCCGGAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAN_4 Pro_isomerase

Protein Analysis

443

Amino Acids

49.85

Weight (kDa)

8.55

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 285 - 427 6.4e-10 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 774
AccI GTMKAC 1 cut(s) 54
AccII CGCG 1 cut(s) 1019
AciI CCGC 3 cut(s) 351, 822, 1010
AclWI GGATC 2 cut(s) 546, 1108
AcoI YGGCCR 1 cut(s) 262
AcsI RAATTY 5 cut(s) 380, 442, 493, 848, 1130
AcuI CTGAAG 1 cut(s) 1221
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 1 cut(s) 334
AflIII ACRYGT 1 cut(s) 57
AjiI CACGTC 1 cut(s) 58
AjnI CCWGG 1 cut(s) 1109
AluBI AGCT 8 cut(s) 365, 451, 859, 904, 963, 1043, 1172, 1234
AluI AGCT 8 cut(s) 365, 451, 859, 904, 963, 1043, 1172, 1234
Alw21I GWGCWC 2 cut(s) 125, 453
Alw26I GTCTC 4 cut(s) 272, 381, 1086, 1276
AlwI GGATC 2 cut(s) 546, 1108
AoxI GGCC 4 cut(s) 262, 279, 336, 1006
ApeKI GCWGC 6 cut(s) 309, 426, 510, 856, 930, 1040
ApoI RAATTY 5 cut(s) 380, 442, 493, 848, 1130
ArsI GACNNNNNNTTYG 2 cut(s) 1236, 1268
AspLEI GCGC 2 cut(s) 299, 1021
AspS9I GGNCC 4 cut(s) 280, 646, 1007, 1124
AsuC2I CCSGG 2 cut(s) 203, 956
AsuHPI GGTGA 5 cut(s) 470, 502, 623, 680, 1207
AvaII GGWCC 2 cut(s) 646, 1124
BaeGI GKGCMC 2 cut(s) 877, 918
BanII GRGCYC 1 cut(s) 453
BbsI GAAGAC 1 cut(s) 1209
Bbv12I GWGCWC 2 cut(s) 125, 453
BbvI GCAGC 6 cut(s) 296, 413, 497, 868, 917, 1052
BccI CCATC 7 cut(s) 98, 226, 286, 390, 410, 539, 1097
BceAI ACGGC 1 cut(s) 249
BcgI CGANNNNNNTGC 2 cut(s) 1208, 1242
BciT130I CCWGG 1 cut(s) 1111
BciVI GTATCC 1 cut(s) 631
BcnI CCSGG 2 cut(s) 203, 956
BcoDI GTCTC 4 cut(s) 272, 381, 1086, 1276
BfaI CTAG 1 cut(s) 1145
BfmI CTRYAG 1 cut(s) 427
BfuI GTATCC 1 cut(s) 631
BisI GCNGC 7 cut(s) 310, 352, 427, 511, 857, 931, 1041
BlsI GCNGC 7 cut(s) 311, 353, 428, 512, 858, 932, 1042
Bme1390I CCNGG 3 cut(s) 203, 956, 1111
Bme18I GGWCC 2 cut(s) 646, 1124
BmgBI CACGTC 1 cut(s) 58
BmgT120I GGNCC 4 cut(s) 280, 646, 1007, 1124
BmiI GGNNCC 5 cut(s) 45, 648, 1120, 1189, 1304
BmrFI CCNGG 3 cut(s) 203, 956, 1111
BmsI GCATC 2 cut(s) 451, 833
BpiI GAAGAC 1 cut(s) 1209
BpmI CTGGAG 1 cut(s) 1276
BpuEI CTTGAG 1 cut(s) 920
BpuMI CCSGG 2 cut(s) 203, 956
BsaAI YACGTR 1 cut(s) 52
BsaJI CCNNGG 2 cut(s) 642, 955
BsaWI WCCGGW 1 cut(s) 1121
Bsc4I CCNNNNNNNGG 1 cut(s) 334
BseBI CCWGG 1 cut(s) 1111
BseDI CCNNGG 2 cut(s) 642, 955
BseGI GGATG 2 cut(s) 90, 401
BseLI CCNNNNNNNGG 1 cut(s) 334
BseMII CTCAG 4 cut(s) 242, 267, 471, 678
BseRI GAGGAG 1 cut(s) 415
BseSI GKGCMC 2 cut(s) 877, 918
BseX3I CGGCCG 1 cut(s) 262
BseXI GCAGC 6 cut(s) 296, 413, 497, 868, 917, 1052
BseYI CCCAGC 2 cut(s) 347, 1230
BsgI GTGCAG 1 cut(s) 966
Bsh1236I CGCG 1 cut(s) 1019
Bsh1285I CGRYCG 1 cut(s) 265
BshFI GGCC 4 cut(s) 264, 281, 338, 1008
BsiEI CGRYCG 1 cut(s) 265
BsiHKAI GWGCWC 2 cut(s) 125, 453
BsiSI CCGG 5 cut(s) 202, 955, 1070, 1122, 1319
BslFI GGGAC 1 cut(s) 983
BslI CCNNNNNNNGG 1 cut(s) 334
BsmAI GTCTC 4 cut(s) 272, 381, 1086, 1276
BsmBI CGTCTC 2 cut(s) 272, 381
BsmFI GGGAC 1 cut(s) 983
BsmI GAATGC 1 cut(s) 428
BsnI GGCC 4 cut(s) 264, 281, 338, 1008
Bsp1286I GDGCHC 4 cut(s) 125, 453, 877, 918
Bsp143I GATC 4 cut(s) 538, 652, 670, 1100
BspACI CCGC 3 cut(s) 351, 822, 1010
BspANI GGCC 4 cut(s) 264, 281, 338, 1008
BspCNI CTCAG 4 cut(s) 241, 266, 472, 677
BspFNI CGCG 1 cut(s) 1019
BspHI TCATGA 1 cut(s) 1325
BspLI GGNNCC 5 cut(s) 45, 648, 1120, 1189, 1304
BspMAI CTGCAG 1 cut(s) 431
BspPI GGATC 2 cut(s) 546, 1108
BssECI CCNNGG 2 cut(s) 642, 955
BssMI GATC 4 cut(s) 538, 652, 670, 1100
BssT1I CCWWGG 1 cut(s) 642
Bst2UI CCWGG 1 cut(s) 1111
Bst4CI ACNGT 5 cut(s) 75, 566, 812, 834, 1180
Bst6I CTCTTC 1 cut(s) 1090
BstBAI YACGTR 1 cut(s) 52
BstC8I GCNNGC 3 cut(s) 928, 1010, 1038
BstDEI CTNAG 5 cut(s) 228, 253, 480, 602, 664
BstF5I GGATG 2 cut(s) 90, 401
BstFNI CGCG 1 cut(s) 1019
BstHHI GCGC 2 cut(s) 299, 1021
BstKTI GATC 4 cut(s) 541, 655, 673, 1103
BstMAI GTCTC 4 cut(s) 272, 381, 1086, 1276
BstMBI GATC 4 cut(s) 538, 652, 670, 1100
BstMCI CGRYCG 1 cut(s) 265
BstMWI GCNNNNNNNGC 3 cut(s) 129, 278, 1018
BstNI CCWGG 1 cut(s) 1111
BstSCI CCNGG 3 cut(s) 201, 954, 1109
BstSFI CTRYAG 1 cut(s) 427
BstSLI GKGCMC 2 cut(s) 877, 918
BstSNI TACGTA 1 cut(s) 52
BstUI CGCG 1 cut(s) 1019
BstV1I GCAGC 6 cut(s) 296, 413, 497, 868, 917, 1052
BstV2I GAAGAC 1 cut(s) 1209
BstZI CGGCCG 1 cut(s) 262
BsuI GTATCC 1 cut(s) 631
BsuRI GGCC 4 cut(s) 264, 281, 338, 1008
BtrI CACGTC 1 cut(s) 58
BtsCI GGATG 2 cut(s) 90, 401
BtsIMutI CAGTG 1 cut(s) 1176
Cac8I GCNNGC 3 cut(s) 928, 1010, 1038
CciI TCATGA 1 cut(s) 1325
CfoI GCGC 2 cut(s) 299, 1021
Cfr13I GGNCC 4 cut(s) 280, 646, 1007, 1124
Csp6I GTAC 1 cut(s) 319
CviAII CATG 7 cut(s) 313, 514, 681, 789, 986, 1207, 1326
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 5 cut(s) 228, 253, 480, 602, 664
DpnI GATC 4 cut(s) 540, 654, 672, 1102
DpnII GATC 4 cut(s) 538, 652, 670, 1100
DraI TTTAAA 1 cut(s) 802
EaeI YGGCCR 1 cut(s) 262
EagI CGGCCG 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 1090
EarI CTCTTC 1 cut(s) 1090
Ecl136II GAGCTC 1 cut(s) 451
EclXI CGGCCG 1 cut(s) 262
Eco105I TACGTA 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 642
Eco24I GRGCYC 1 cut(s) 453
Eco47I GGWCC 2 cut(s) 646, 1124
Eco52I CGGCCG 1 cut(s) 262
Eco53kI GAGCTC 1 cut(s) 451
Eco57I CTGAAG 1 cut(s) 1221
EcoICRI GAGCTC 1 cut(s) 451
EcoRI GAATTC 3 cut(s) 380, 493, 1130
EcoRII CCWGG 1 cut(s) 1109
EcoT14I CCWWGG 1 cut(s) 642
EcoT38I GRGCYC 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 642
Esp3I CGTCTC 2 cut(s) 272, 381
FaeI CATG 7 cut(s) 316, 517, 684, 792, 989, 1210, 1329
FalI AAGNNNNNCTT 4 cut(s) 626, 658, 1020, 1052
FaqI GGGAC 1 cut(s) 983
FatI CATG 7 cut(s) 312, 513, 680, 788, 985, 1206, 1325
FauI CCCGC 1 cut(s) 1017
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 7 cut(s) 310, 352, 427, 511, 857, 931, 1041
FokI GGATG 2 cut(s) 77, 408
FriOI GRGCYC 1 cut(s) 453
Fsp4HI GCNGC 7 cut(s) 310, 352, 427, 511, 857, 931, 1041
FspBI CTAG 1 cut(s) 1145
GlaI GCGC 2 cut(s) 298, 1020
GluI GCNGC 7 cut(s) 310, 352, 427, 511, 857, 931, 1041
GsaI CCCAGC 2 cut(s) 351, 1234
GsuI CTGGAG 1 cut(s) 1276
HaeIII GGCC 4 cut(s) 264, 281, 338, 1008
HapII CCGG 5 cut(s) 202, 955, 1070, 1122, 1319
HhaI GCGC 2 cut(s) 299, 1021
Hin1II CATG 7 cut(s) 316, 517, 684, 792, 989, 1210, 1329
Hin6I GCGC 2 cut(s) 297, 1019
HinP1I GCGC 2 cut(s) 297, 1019
HincII GTYRAC 1 cut(s) 739
HindII GTYRAC 1 cut(s) 739
HindIII AAGCTT 2 cut(s) 961, 1170
HinfI GANTC 8 cut(s) 251, 368, 662, 971, 1066, 1285, 1311, 1322
HpaII CCGG 5 cut(s) 202, 955, 1070, 1122, 1319
HphI GGTGA 5 cut(s) 470, 502, 623, 680, 1207
Hpy166II GTNNAC 4 cut(s) 55, 319, 599, 739
Hpy8I GTNNAC 4 cut(s) 55, 319, 599, 739
Hpy99I CGWCG 4 cut(s) 99, 181, 243, 759
HpyAV CCTTC 1 cut(s) 755
HpyCH4III ACNGT 5 cut(s) 75, 566, 812, 834, 1180
HpyCH4IV ACGT 3 cut(s) 51, 57, 390
HpyF10VI GCNNNNNNNGC 3 cut(s) 129, 278, 1018
HpyF3I CTNAG 5 cut(s) 228, 253, 480, 602, 664
HpySE526I ACGT 3 cut(s) 51, 57, 390
Hsp92II CATG 7 cut(s) 316, 517, 684, 792, 989, 1210, 1329
HspAI GCGC 2 cut(s) 297, 1019
Kzo9I GATC 4 cut(s) 538, 652, 670, 1100
LmnI GCTCC 4 cut(s) 448, 864, 1003, 1257
Lsp1109I GCAGC 6 cut(s) 296, 413, 497, 868, 917, 1052
LweI GCATC 2 cut(s) 451, 833
MaeI CTAG 1 cut(s) 1145
MaeII ACGT 3 cut(s) 51, 57, 390
MaeIII GTNAC 1 cut(s) 560
MalI GATC 4 cut(s) 540, 654, 672, 1102
MboI GATC 4 cut(s) 538, 652, 670, 1100
MboII GAAGA 9 cut(s) 422, 425, 489, 714, 1107, 1126, 1187, 1214, 1320
MhlI GDGCHC 4 cut(s) 125, 453, 877, 918
MluCI AATT 8 cut(s) 181, 196, 380, 442, 493, 848, 935, 1130
MlyI GAGTC 4 cut(s) 245, 656, 965, 1294
MmeI TCCRAC 2 cut(s) 373, 1262
MseI TTAA 5 cut(s) 486, 623, 801, 846, 1059
MspA1I CMGCKG 2 cut(s) 351, 365
MspI CCGG 5 cut(s) 202, 955, 1070, 1122, 1319
MspR9I CCNGG 3 cut(s) 203, 956, 1111
Mva1269I GAATGC 1 cut(s) 428
MvaI CCWGG 1 cut(s) 1111
MvnI CGCG 1 cut(s) 1019
MwoI GCNNNNNNNGC 3 cut(s) 129, 278, 1018
NciI CCSGG 2 cut(s) 203, 956
NdeII GATC 4 cut(s) 538, 652, 670, 1100
NlaIII CATG 7 cut(s) 316, 517, 684, 792, 989, 1210, 1329
NlaIV GGNNCC 5 cut(s) 45, 648, 1120, 1189, 1304
NmeAIII GCCGAG 1 cut(s) 240
NmuCI GTSAC 1 cut(s) 560
PagI TCATGA 1 cut(s) 1325
PcsI WCGNNNNNNNCGW 1 cut(s) 176
PctI GAATGC 1 cut(s) 428
PfeI GAWTC 4 cut(s) 368, 1066, 1311, 1322
PkrI GCNGC 7 cut(s) 311, 353, 428, 512, 858, 932, 1042
PleI GAGTC 4 cut(s) 245, 656, 965, 1293
PpsI GAGTC 4 cut(s) 245, 656, 965, 1293
Ppu21I YACGTR 1 cut(s) 52
PsiI TTATAA 1 cut(s) 774
Psp124BI GAGCTC 1 cut(s) 453
Psp6I CCWGG 1 cut(s) 1109
PspFI CCCAGC 2 cut(s) 347, 1230
PspGI CCWGG 1 cut(s) 1109
PspN4I GGNNCC 5 cut(s) 45, 648, 1120, 1189, 1304
PspPI GGNCC 4 cut(s) 280, 646, 1007, 1124
PstI CTGCAG 1 cut(s) 431
PvuII CAGCTG 1 cut(s) 365
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SacI GAGCTC 1 cut(s) 453
SaqAI TTAA 5 cut(s) 486, 623, 801, 846, 1059
SatI GCNGC 7 cut(s) 310, 352, 427, 511, 857, 931, 1041
Sau3AI GATC 4 cut(s) 538, 652, 670, 1100
Sau96I GGNCC 4 cut(s) 280, 646, 1007, 1124
SchI GAGTC 4 cut(s) 245, 656, 965, 1294
ScrFI CCNGG 3 cut(s) 203, 956, 1111
SduI GDGCHC 4 cut(s) 125, 453, 877, 918
SfaNI GCATC 2 cut(s) 451, 833
SfcI CTRYAG 1 cut(s) 427
SinI GGWCC 2 cut(s) 646, 1124
SmlI CTYRAG 1 cut(s) 899
SmoI CTYRAG 1 cut(s) 899
SnaBI TACGTA 1 cut(s) 52
Sse9I AATT 8 cut(s) 181, 196, 380, 442, 493, 848, 935, 1130
SsiI CCGC 3 cut(s) 351, 822, 1010
SspI AATATT 1 cut(s) 303
SspMI CTAG 1 cut(s) 1145
SstI GAGCTC 1 cut(s) 453
StyD4I CCNGG 3 cut(s) 201, 954, 1109
StyI CCWWGG 1 cut(s) 642
TaaI ACNGT 5 cut(s) 75, 566, 812, 834, 1180
TaiI ACGT 3 cut(s) 54, 60, 393
TaqI TCGA 3 cut(s) 65, 541, 754
TaqII GACCGA 1 cut(s) 830
TasI AATT 8 cut(s) 181, 196, 380, 442, 493, 848, 935, 1130
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 4 cut(s) 368, 1066, 1311, 1322
Tru1I TTAA 5 cut(s) 486, 623, 801, 846, 1059
Tru9I TTAA 5 cut(s) 486, 623, 801, 846, 1059
TscAI CASTG 1 cut(s) 1183
TseFI GTSAC 1 cut(s) 560
TseI GCWGC 6 cut(s) 309, 426, 510, 856, 930, 1040
Tsp45I GTSAC 1 cut(s) 560
TspDTI ATGAA 4 cut(s) 200, 714, 777, 1126
TspGWI ACGGA 6 cut(s) 83, 724, 851, 990, 1180, 1264
TspRI CASTG 1 cut(s) 1183
VpaK11BI GGWCC 2 cut(s) 646, 1124
XapI RAATTY 5 cut(s) 380, 442, 493, 848, 1130
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 1 cut(s) 1145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.