AT4G17070

Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003640
Physical Location & Seq
Reverse (-)
9595337 .. 9598282
2946 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17070.1

Sequence Viewer

Length: 1032 bp
ATGCCCCGTCGATTAAACGACGGCGAGCCTGGCCGTTTTACCGCCACCGTTCTTCTTTTAATCGGTTTAATCTCTTGTGTTATCGTCTACGCTGTTTTCTCTTCTGTCCTCCGTCCATCCCAAGATCCTACACTCGTTGATTCCGCGGTTCGATTCAAAGAGGAGCCGCGAGATCACGATGCAACTGAAGACGGTGAAGGTGGGTGTTGCCGTGGAATTGATAATCTGGAGCTTTGGGGTCCGGCGGTGAAGTGGGGCACGGATTTTAAGTTTAATTCGTCTGATGGATGTTGTAAAGCTTGTAAAGTTATGTGTAGTGGCAACGATGGACCTTGCTTGTGCGATTCATGGGTGTTTTGTGGGAACAAAGAGGATTGTGGCTCGAAGTTTGGAGAGTGTTGGTTGAAGAAGCAAAAAGATGTCTTGGTGCCTGATCGACAAGGAGGTGGCGAGAAAGTAATGTGGACATCTGGACTTATCTTCGGACAAGGCCAGGGCATTGTTGGTTTTGAGACGGAACACGGCGTAATTCATGTCAAACTTCACCCTGAATGCGCTCCTCACTCAGTATACTACATTCTGAGTTTGTTAACTCTACGCCATTGTGCAGGCTGCCAGTTTCATCGAGCAGAGAACCGGGGATCATATTGGGACTCAGAAGGCAATCATGTAAAGAATGCTCCCTTTGGTCCACCATACGCTATGATTCAAGGAATACTCCAGGCCGAGGGAAACATTTTCACACCGATCCCAACCGAGCACTGCCCAACTATAAGCCGTGGCTCGGTGGCGTGGGTCGGCTCGGGTCCAGAATTCTTCATCAGTTTAGCAAACCACCACGAATGGAAACAATCTTACACGGTATTCGGCTTAGTTCTACCAGAAGACATGGATGTCGTGGAGACAATTGCCGGTTTACCAACAAGAGCCGATGTCTGGAACAGCGTCAATGTCTCTGTGCTGGAGAAACCGGTTTCCTTAACCGTACGGAGAATGAAGACGGGCCAAGAACAAGAAGAAACCGGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAN_4 Pro_isomerase

Protein Analysis

343

Amino Acids

37.67

Weight (kDa)

5.48

Isoelectric Point (pI)

42.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 168 - 321 5.3e-14 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 893
AccB1I GGYRCC 1 cut(s) 427
AccI GTMKAC 2 cut(s) 87, 570
AccII CGCG 2 cut(s) 146, 169
AciI CCGC 5 cut(s) 42, 144, 146, 167, 245
AclWI GGATC 3 cut(s) 119, 649, 742
AcoI YGGCCR 1 cut(s) 31
AcsI RAATTY 1 cut(s) 812
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 1 cut(s) 987
AfiI CCNNNNNNNGG 3 cut(s) 727, 784, 936
AgeI ACCGGT 2 cut(s) 970, 1022
AgsI TTSAA 3 cut(s) 157, 406, 710
AjnI CCWGG 3 cut(s) 28, 492, 720
AluBI AGCT 2 cut(s) 232, 299
AluI AGCT 2 cut(s) 232, 299
Alw21I GWGCWC 1 cut(s) 762
Alw26I GTCTC 3 cut(s) 506, 896, 958
AlwI GGATC 3 cut(s) 119, 649, 742
Ama87I CYCGRG 1 cut(s) 802
AoxI GGCC 4 cut(s) 31, 490, 723, 1003
ApeKI GCWGC 1 cut(s) 612
ApoI RAATTY 1 cut(s) 812
AsiGI ACCGGT 2 cut(s) 970, 1022
AspLEI GCGC 1 cut(s) 557
AspS9I GGNCC 5 cut(s) 239, 329, 689, 806, 1003
AsuC2I CCSGG 1 cut(s) 638
AsuHPI GGTGA 3 cut(s) 206, 259, 536
AvaI CYCGRG 1 cut(s) 802
AvaII GGWCC 4 cut(s) 239, 329, 689, 806
BaeGI GKGCMC 1 cut(s) 260
BanI GGYRCC 1 cut(s) 427
BbsI GAAGAC 3 cut(s) 195, 891, 1004
Bbv12I GWGCWC 1 cut(s) 762
BbvI GCAGC 1 cut(s) 599
BccI CCATC 3 cut(s) 124, 278, 320
BceAI ACGGC 5 cut(s) 18, 37, 195, 538, 762
BciT130I CCWGG 3 cut(s) 30, 494, 722
BcnI CCSGG 1 cut(s) 638
BcoDI GTCTC 3 cut(s) 506, 896, 958
BisI GCNGC 2 cut(s) 167, 613
BlsI GCNGC 2 cut(s) 168, 614
Bme1390I CCNGG 4 cut(s) 30, 494, 638, 722
Bme18I GGWCC 4 cut(s) 239, 329, 689, 806
BmeT110I CYCGRG 1 cut(s) 802
BmgT120I GGNCC 5 cut(s) 239, 329, 689, 806, 1003
BmiI GGNNCC 4 cut(s) 165, 240, 429, 807
BmrFI CCNGG 4 cut(s) 30, 494, 638, 722
BmsI GCATC 1 cut(s) 169
BpiI GAAGAC 3 cut(s) 195, 891, 1004
BpmI CTGGAG 3 cut(s) 248, 704, 983
BpuMI CCSGG 1 cut(s) 638
BsaJI CCNNGG 6 cut(s) 144, 211, 493, 637, 726, 778
BsaWI WCCGGW 2 cut(s) 970, 1022
Bsc4I CCNNNNNNNGG 3 cut(s) 727, 784, 936
Bse118I RCCGGY 3 cut(s) 911, 970, 1022
Bse1I ACTGG 1 cut(s) 616
BseBI CCWGG 3 cut(s) 30, 494, 722
BseDI CCNNGG 6 cut(s) 144, 211, 493, 637, 726, 778
BseGI GGATG 3 cut(s) 116, 293, 898
BseLI CCNNNNNNNGG 3 cut(s) 727, 784, 936
BseMII CTCAG 3 cut(s) 572, 579, 669
BseNI ACTGG 1 cut(s) 616
BseRI GAGGAG 2 cut(s) 176, 549
BseSI GKGCMC 1 cut(s) 260
BseXI GCAGC 1 cut(s) 599
BsgI GTGCAG 1 cut(s) 627
Bsh1236I CGCG 2 cut(s) 146, 169
BshFI GGCC 4 cut(s) 33, 492, 725, 1005
BshNI GGYRCC 1 cut(s) 427
BshTI ACCGGT 2 cut(s) 970, 1022
BsiHKAI GWGCWC 1 cut(s) 762
BsiHKCI CYCGRG 1 cut(s) 802
BsiSI CCGG 5 cut(s) 242, 637, 912, 971, 1023
BsiWI CGTACG 1 cut(s) 985
BslFI GGGAC 1 cut(s) 665
BslI CCNNNNNNNGG 3 cut(s) 727, 784, 936
BsmAI GTCTC 3 cut(s) 506, 896, 958
BsmBI CGTCTC 1 cut(s) 506
BsmFI GGGAC 1 cut(s) 665
BsmI GAATGC 2 cut(s) 557, 682
BsnI GGCC 4 cut(s) 33, 492, 725, 1005
BsoBI CYCGRG 1 cut(s) 802
Bsp1286I GDGCHC 2 cut(s) 260, 762
Bsp143I GATC 5 cut(s) 124, 172, 433, 641, 747
BspACI CCGC 5 cut(s) 42, 144, 146, 167, 245
BspANI GGCC 4 cut(s) 33, 492, 725, 1005
BspCNI CTCAG 3 cut(s) 573, 578, 668
BspFNI CGCG 2 cut(s) 146, 169
BspHI TCATGA 1 cut(s) 1028
BspLI GGNNCC 4 cut(s) 165, 240, 429, 807
BspPI GGATC 3 cut(s) 119, 649, 742
BspT107I GGYRCC 1 cut(s) 427
BsrFI RCCGGY 3 cut(s) 911, 970, 1022
BsrI ACTGG 1 cut(s) 616
BssAI RCCGGY 3 cut(s) 911, 970, 1022
BssECI CCNNGG 6 cut(s) 144, 211, 493, 637, 726, 778
BssMI GATC 5 cut(s) 124, 172, 433, 641, 747
BssNAI GTATAC 1 cut(s) 571
Bst1107I GTATAC 1 cut(s) 571
Bst2UI CCWGG 3 cut(s) 30, 494, 722
Bst4CI ACNGT 4 cut(s) 49, 194, 862, 985
Bst6I CTCTTC 1 cut(s) 106
BstC8I GCNNGC 2 cut(s) 26, 610
BstDEI CTNAG 4 cut(s) 565, 581, 655, 871
BstDSI CCRYGG 3 cut(s) 144, 211, 778
BstF5I GGATG 3 cut(s) 116, 293, 898
BstFNI CGCG 2 cut(s) 146, 169
BstHHI GCGC 1 cut(s) 557
BstKTI GATC 5 cut(s) 127, 175, 436, 644, 750
BstMAI GTCTC 3 cut(s) 506, 896, 958
BstMBI GATC 5 cut(s) 124, 172, 433, 641, 747
BstMWI GCNNNNNNNGC 1 cut(s) 30
BstNI CCWGG 3 cut(s) 30, 494, 722
BstSCI CCNGG 4 cut(s) 28, 492, 636, 720
BstSLI GKGCMC 1 cut(s) 260
BstUI CGCG 2 cut(s) 146, 169
BstV1I GCAGC 1 cut(s) 599
BstV2I GAAGAC 3 cut(s) 195, 891, 1004
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BstZ17I GTATAC 1 cut(s) 571
BsuRI GGCC 4 cut(s) 33, 492, 725, 1005
BtgI CCRYGG 3 cut(s) 144, 211, 778
BtsCI GGATG 3 cut(s) 116, 293, 898
BtsI GCAGTG 1 cut(s) 760
BtsIMutI CAGTG 1 cut(s) 760
Cac8I GCNNGC 2 cut(s) 26, 610
CciI TCATGA 1 cut(s) 1028
CfoI GCGC 1 cut(s) 557
Cfr10I RCCGGY 3 cut(s) 911, 970, 1022
Cfr13I GGNCC 5 cut(s) 239, 329, 689, 806, 1003
Cfr42I CCGCGG 1 cut(s) 147
CseI GACGC 1 cut(s) 934
Csp6I GTAC 1 cut(s) 986
CspAI ACCGGT 2 cut(s) 970, 1022
CviAII CATG 5 cut(s) 348, 533, 668, 889, 1029
CviQI GTAC 1 cut(s) 986
DdeI CTNAG 4 cut(s) 565, 581, 655, 871
DpnI GATC 5 cut(s) 126, 174, 435, 643, 749
DpnII GATC 5 cut(s) 124, 172, 433, 641, 747
DrdI GACNNNNNNGTC 1 cut(s) 893
DseDI GACNNNNNNGTC 1 cut(s) 893
EaeI YGGCCR 1 cut(s) 31
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
Eco47I GGWCC 4 cut(s) 239, 329, 689, 806
Eco57I CTGAAG 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 802
EcoRI GAATTC 1 cut(s) 812
EcoRII CCWGG 3 cut(s) 28, 492, 720
Esp3I CGTCTC 1 cut(s) 506
FaeI CATG 5 cut(s) 351, 536, 671, 892, 1032
FaqI GGGAC 1 cut(s) 665
FatI CATG 5 cut(s) 347, 532, 667, 888, 1028
FblI GTMKAC 2 cut(s) 87, 570
Fnu4HI GCNGC 2 cut(s) 167, 613
FokI GGATG 3 cut(s) 103, 300, 905
Fsp4HI GCNGC 2 cut(s) 167, 613
GlaI GCGC 1 cut(s) 556
GluI GCNGC 2 cut(s) 167, 613
GsuI CTGGAG 3 cut(s) 248, 704, 983
HaeIII GGCC 4 cut(s) 33, 492, 725, 1005
HapII CCGG 5 cut(s) 242, 637, 912, 971, 1023
HgaI GACGC 1 cut(s) 934
HhaI GCGC 1 cut(s) 557
Hin1II CATG 5 cut(s) 351, 536, 671, 892, 1032
Hin6I GCGC 1 cut(s) 555
HinP1I GCGC 1 cut(s) 555
HincII GTYRAC 1 cut(s) 591
HindII GTYRAC 1 cut(s) 591
HindIII AAGCTT 1 cut(s) 297
HinfI GANTC 5 cut(s) 140, 153, 344, 653, 706
HpaI GTTAAC 1 cut(s) 591
HpaII CCGG 5 cut(s) 242, 637, 912, 971, 1023
HphI GGTGA 3 cut(s) 206, 259, 536
Hpy166II GTNNAC 6 cut(s) 88, 465, 571, 591, 692, 917
Hpy188I TCNGA 4 cut(s) 283, 485, 582, 658
Hpy188III TCNNGA 6 cut(s) 176, 227, 471, 809, 937, 1029
Hpy8I GTNNAC 6 cut(s) 88, 465, 571, 591, 692, 917
Hpy99I CGWCG 2 cut(s) 12, 23
HpyAV CCTTC 2 cut(s) 191, 653
HpyCH4III ACNGT 4 cut(s) 49, 194, 862, 985
HpyCH4V TGCA 2 cut(s) 182, 608
HpyF10VI GCNNNNNNNGC 1 cut(s) 30
HpyF3I CTNAG 4 cut(s) 565, 581, 655, 871
Hsp92II CATG 5 cut(s) 351, 536, 671, 892, 1032
HspAI GCGC 1 cut(s) 555
KspAI GTTAAC 1 cut(s) 591
KspI CCGCGG 1 cut(s) 147
Kzo9I GATC 5 cut(s) 124, 172, 433, 641, 747
LmnI GCTCC 4 cut(s) 163, 229, 562, 685
Lsp1109I GCAGC 1 cut(s) 599
LweI GCATC 1 cut(s) 169
MalI GATC 5 cut(s) 126, 174, 435, 643, 749
MboI GATC 5 cut(s) 124, 172, 433, 641, 747
MboII GAAGA 9 cut(s) 44, 93, 200, 418, 472, 808, 896, 1009, 1028
MfeI CAATTG 1 cut(s) 906
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 2 cut(s) 260, 762
MluCI AATT 5 cut(s) 216, 274, 528, 812, 906
MlyI GAGTC 1 cut(s) 647
MnlI CCTC 6 cut(s) 119, 154, 364, 437, 570, 721
MseI TTAA 7 cut(s) 14, 59, 68, 267, 273, 590, 980
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 5 cut(s) 242, 637, 912, 971, 1023
MspR9I CCNGG 4 cut(s) 30, 494, 638, 722
MunI CAATTG 1 cut(s) 906
Mva1269I GAATGC 2 cut(s) 557, 682
MvaI CCWGG 3 cut(s) 30, 494, 722
MvnI CGCG 2 cut(s) 146, 169
MwoI GCNNNNNNNGC 1 cut(s) 30
NciI CCSGG 1 cut(s) 638
NdeII GATC 5 cut(s) 124, 172, 433, 641, 747
NlaIII CATG 5 cut(s) 351, 536, 671, 892, 1032
NlaIV GGNNCC 4 cut(s) 165, 240, 429, 807
NmeAIII GCCGAG 1 cut(s) 751
PagI TCATGA 1 cut(s) 1028
PctI GAATGC 2 cut(s) 557, 682
PfeI GAWTC 4 cut(s) 140, 153, 344, 706
Pfl23II CGTACG 1 cut(s) 985
PinAI ACCGGT 2 cut(s) 970, 1022
PkrI GCNGC 2 cut(s) 168, 614
PleI GAGTC 1 cut(s) 647
PpsI GAGTC 1 cut(s) 647
Psp6I CCWGG 3 cut(s) 28, 492, 720
PspGI CCWGG 3 cut(s) 28, 492, 720
PspLI CGTACG 1 cut(s) 985
PspN4I GGNNCC 4 cut(s) 165, 240, 429, 807
PspPI GGNCC 5 cut(s) 239, 329, 689, 806, 1003
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 1 cut(s) 987
RsaNI GTAC 1 cut(s) 986
SacII CCGCGG 1 cut(s) 147
SaqAI TTAA 7 cut(s) 14, 59, 68, 267, 273, 590, 980
SatI GCNGC 2 cut(s) 167, 613
Sau3AI GATC 5 cut(s) 124, 172, 433, 641, 747
Sau96I GGNCC 5 cut(s) 239, 329, 689, 806, 1003
SchI GAGTC 1 cut(s) 647
ScrFI CCNGG 4 cut(s) 30, 494, 638, 722
SduI GDGCHC 2 cut(s) 260, 762
SetI ASST 5 cut(s) 202, 234, 301, 334, 448
SfaNI GCATC 1 cut(s) 169
Sfr303I CCGCGG 1 cut(s) 147
SgrBI CCGCGG 1 cut(s) 147
SinI GGWCC 4 cut(s) 239, 329, 689, 806
Sse9I AATT 5 cut(s) 216, 274, 528, 812, 906
SsiI CCGC 5 cut(s) 42, 144, 146, 167, 245
StyD4I CCNGG 4 cut(s) 28, 492, 636, 720
TaaI ACNGT 4 cut(s) 49, 194, 862, 985
TaqI TCGA 5 cut(s) 10, 151, 383, 436, 625
TasI AATT 5 cut(s) 216, 274, 528, 812, 906
TauI GCSGC 1 cut(s) 169
TfiI GAWTC 4 cut(s) 140, 153, 344, 706
Tru1I TTAA 7 cut(s) 14, 59, 68, 267, 273, 590, 980
Tru9I TTAA 7 cut(s) 14, 59, 68, 267, 273, 590, 980
TscAI CASTG 1 cut(s) 767
TseI GCWGC 1 cut(s) 612
TspDTI ATGAA 6 cut(s) 336, 521, 611, 808, 1010, 1017
TspGWI ACGGA 4 cut(s) 101, 275, 530, 1003
TspRI CASTG 1 cut(s) 767
VpaK11BI GGWCC 4 cut(s) 239, 329, 689, 806
XapI RAATTY 1 cut(s) 812
XcmI CCANNNNNNNNNTGG 1 cut(s) 500
XmiI GTMKAC 2 cut(s) 87, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.