Rroxscaffold_4G00309140

Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003640
Physical Location & Seq
Reverse (-)
30791131 .. 30794935
3805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00309140.1

Sequence Viewer

Length: 1233 bp
ATGGGTCGCCGGCAGACCGAGTCCGACCTCGGTCGTTTTGCACTTCTGGCCCTTCTCCTTATGGGTGCAATCTCCTGCTGCATGCTCTACCTGTTCATCTCTATGGTCTTGAAATCCAATAGCGCCACATTTGCTCCAATTTCAGAGCTGGGTGAGAATGGCGGTGAGGTTGTTTTGGCGGGTAAAGAAGAAGGTGAGTGTTGTAGAGGGATCGAGCATTTGGAGCTTTGGGGCGATGCTGTGAAATGGGGGGCTGAGTTTAAGGTCAATTCTTCAAAGGAGTGCTGCATGGCTTGTAAGGATATGTGTGGGGATCCAAATGGGCCTTGTTTGTGTGATTCTTGGGTGTTTTGTGGGGATAGAGAGGCTTGCGGGGATAAGTTTGGTGAGTGTTGGTTAAAAAAACAAAAGGATACATTGGAGCCTGATCGGCGAGACTCGGGGGATCTAGTTATGTGGACTTCTGGACATATATTTGGGAAAGGAGAGGTAGAAAGGGGAGTGCAGCAAAAAGGGAAAGGAGGTTTAGAGGGGAGAGGTGGTATGTATGAAATACAAGGAAGTAACTTACGAGTGGTAGAGAAGGAAGAGGTTCATGGCTTATGGGACATGCAGCAGAAGGATTCATCATTTGTATTAGAAGACATTCCTCAGGCAGGAACAAAGTCTACCATCAATTTGAGACATTTAGCTTGTGCACAAACTACTAGCCACAAAGGTGTCGTTGGCTTGGAAACAGAATTTGGGATTCTTCGTATAAAGCTCTTTGTTGATTGTGCCCCACATTCTGTATTCTATATTCTTGAGCTGTTGCGAGAGCATTATTGTGGAGGTTGCCAATTTTATCGTGCAGAAAGCCGTGGAAGCTTTTGGGACTCCATAGGAAATCATGTTCAAAATGCTCCCTTTGGCCCTCCTTTTGGACTTGTACAAGGAACACTTGAAGCCCACGGGATTATATTTAAGGAGATTCCAAGAGAGGGTAAACACAACATCAGAAGGGGATCGGTTGCCTGGGTTGGTTCTGGTCCAGGTTTCTTTATCAGCCTGGCCAACCATTTTGAGTGGAAAAAAGCATACACCGTGTTTGGTTCTGTTCTTCCCGAAGACATGGAAATTGCAGAAAGAATAGCGCAGCTTCCAACCAAGCAAGAGGTTTGGAGTAACATTGATGTCTCTGTCTTGCAGAGACCTGTTTCATTACAGTTCCAAAGAATCAAATCAAACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAN_4 Pro_isomerase

Protein Analysis

410

Amino Acids

45.51

Weight (kDa)

5.84

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 242 - 393 2.3e-11 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 668
AciI CCGC 3 cut(s) 162, 179, 372
AclWI GGATC 5 cut(s) 218, 308, 321, 453, 1012
AcoI YGGCCR 1 cut(s) 1050
AcsI RAATTY 1 cut(s) 740
AfaI GTAC 1 cut(s) 930
AfiI CCNNNNNNNGG 3 cut(s) 656, 920, 980
AgsI TTSAA 4 cut(s) 112, 276, 896, 944
AjnI CCWGG 3 cut(s) 1013, 1030, 1047
AjuI GAANNNNNNNTTGG 2 cut(s) 726, 758
AleI CACNNNNGTG 1 cut(s) 717
AloI GAACNNNNNNTCC 2 cut(s) 876, 908
AluBI AGCT 7 cut(s) 148, 226, 692, 763, 808, 867, 1138
AluI AGCT 7 cut(s) 148, 226, 692, 763, 808, 867, 1138
Alw21I GWGCWC 1 cut(s) 700
Alw26I GTCTC 4 cut(s) 429, 676, 1180, 1183
Alw44I GTGCAC 1 cut(s) 696
AlwI GGATC 5 cut(s) 218, 308, 321, 453, 1012
Ama87I CYCGRG 1 cut(s) 439
AoxI GGCC 4 cut(s) 48, 323, 910, 1050
ApaLI GTGCAC 1 cut(s) 696
ApeKI GCWGC 5 cut(s) 78, 285, 505, 613, 1135
ApoI RAATTY 1 cut(s) 740
Asp700I GAANNNNTTC 2 cut(s) 591, 645
AspLEI GCGC 2 cut(s) 125, 1135
AspS9I GGNCC 4 cut(s) 49, 323, 911, 1028
AsuHPI GGTGA 4 cut(s) 164, 176, 206, 398
AvaI CYCGRG 1 cut(s) 439
AvaII GGWCC 1 cut(s) 1028
AxyI CCTNAGG 1 cut(s) 651
BaeGI GKGCMC 2 cut(s) 700, 781
BalI TGGCCA 1 cut(s) 1052
BamHI GGATCC 1 cut(s) 313
BbsI GAAGAC 2 cut(s) 648, 1113
Bbv12I GWGCWC 1 cut(s) 700
BbvI GCAGC 5 cut(s) 65, 272, 517, 625, 1147
BccI CCATC 1 cut(s) 680
BceAI ACGGC 1 cut(s) 843
BciT130I CCWGG 3 cut(s) 1015, 1032, 1049
BciVI GTATCC 1 cut(s) 406
BcoDI GTCTC 4 cut(s) 429, 676, 1180, 1183
BfaI CTAG 2 cut(s) 449, 708
BfoI RGCGCY 1 cut(s) 126
BfuI GTATCC 1 cut(s) 406
BglI GCCNNNNNGGC 1 cut(s) 430
BisI GCNGC 5 cut(s) 79, 286, 506, 614, 1136
BlsI GCNGC 5 cut(s) 80, 287, 507, 615, 1137
Bme1390I CCNGG 3 cut(s) 1015, 1032, 1049
Bme18I GGWCC 1 cut(s) 1028
BmeT110I CYCGRG 1 cut(s) 439
BmgT120I GGNCC 4 cut(s) 49, 323, 911, 1028
BmiI GGNNCC 2 cut(s) 315, 423
BmrFI CCNGG 3 cut(s) 1015, 1032, 1049
BmsI GCATC 1 cut(s) 226
BoxI GACNNNNGTC 1 cut(s) 30
BpiI GAAGAC 2 cut(s) 648, 1113
BpuEI CTTGAG 1 cut(s) 824
BsaI GGTCTC 1 cut(s) 1183
BsaJI CCNNGG 4 cut(s) 28, 859, 949, 1014
BsaXI ACNNNNNCTCC 4 cut(s) 118, 148, 526, 556
Bsc4I CCNNNNNNNGG 3 cut(s) 656, 920, 980
Bse118I RCCGGY 1 cut(s) 9
Bse21I CCTNAGG 1 cut(s) 651
BseBI CCWGG 3 cut(s) 1015, 1032, 1049
BseDI CCNNGG 4 cut(s) 28, 859, 949, 1014
BseLI CCNNNNNNNGG 3 cut(s) 656, 920, 980
BseMII CTCAG 2 cut(s) 246, 665
BseSI GKGCMC 2 cut(s) 700, 781
BseXI GCAGC 5 cut(s) 65, 272, 517, 625, 1147
BseYI CCCAGC 1 cut(s) 148
BsgI GTGCAG 2 cut(s) 524, 870
Bsh1285I CGRYCG 1 cut(s) 34
BshFI GGCC 4 cut(s) 50, 325, 912, 1052
BsiEI CGRYCG 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 700
BsiHKCI CYCGRG 1 cut(s) 439
BsiSI CCGG 1 cut(s) 10
BslFI GGGAC 2 cut(s) 620, 887
BslI CCNNNNNNNGG 3 cut(s) 656, 920, 980
BsmAI GTCTC 4 cut(s) 429, 676, 1180, 1183
BsmFI GGGAC 2 cut(s) 620, 887
BsnI GGCC 4 cut(s) 50, 325, 912, 1052
Bso31I GGTCTC 1 cut(s) 1183
BsoBI CYCGRG 1 cut(s) 439
Bsp1286I GDGCHC 2 cut(s) 700, 781
Bsp1407I TGTACA 1 cut(s) 928
Bsp143I GATC 5 cut(s) 210, 313, 427, 445, 1004
BspACI CCGC 3 cut(s) 162, 179, 372
BspANI GGCC 4 cut(s) 50, 325, 912, 1052
BspCNI CTCAG 2 cut(s) 247, 664
BspLI GGNNCC 2 cut(s) 315, 423
BspPI GGATC 5 cut(s) 218, 308, 321, 453, 1012
BspTNI GGTCTC 1 cut(s) 1183
BsrFI RCCGGY 1 cut(s) 9
BsrGI TGTACA 1 cut(s) 928
BssAI RCCGGY 1 cut(s) 9
BssECI CCNNGG 4 cut(s) 28, 859, 949, 1014
BssMI GATC 5 cut(s) 210, 313, 427, 445, 1004
Bst2UI CCWGG 3 cut(s) 1015, 1032, 1049
Bst4CI ACNGT 2 cut(s) 1084, 1206
Bst6I CTCTTC 1 cut(s) 582
BstAUI TGTACA 1 cut(s) 928
BstC8I GCNNGC 3 cut(s) 11, 83, 370
BstDEI CTNAG 2 cut(s) 255, 651
BstDSI CCRYGG 2 cut(s) 859, 949
BstENI CCTNNNNNAGG 1 cut(s) 654
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 2 cut(s) 125, 1135
BstKTI GATC 5 cut(s) 213, 316, 430, 448, 1007
BstMAI GTCTC 4 cut(s) 429, 676, 1180, 1183
BstMBI GATC 5 cut(s) 210, 313, 427, 445, 1004
BstMCI CGRYCG 1 cut(s) 34
BstMWI GCNNNNNNNGC 5 cut(s) 47, 131, 223, 430, 864
BstNI CCWGG 3 cut(s) 1015, 1032, 1049
BstNSI RCATGY 2 cut(s) 85, 613
BstPAI GACNNNNGTC 1 cut(s) 30
BstSCI CCNGG 3 cut(s) 1013, 1030, 1047
BstSLI GKGCMC 2 cut(s) 700, 781
BstV1I GCAGC 5 cut(s) 65, 272, 517, 625, 1147
BstV2I GAAGAC 2 cut(s) 648, 1113
BstX2I RGATCY 2 cut(s) 313, 445
BstYI RGATCY 2 cut(s) 313, 445
Bsu36I CCTNAGG 1 cut(s) 651
BsuI GTATCC 1 cut(s) 406
BsuRI GGCC 4 cut(s) 50, 325, 912, 1052
BtgI CCRYGG 2 cut(s) 859, 949
BtgZI GCGATG 1 cut(s) 249
Cac8I GCNNGC 3 cut(s) 11, 83, 370
CfoI GCGC 2 cut(s) 125, 1135
Cfr10I RCCGGY 1 cut(s) 9
Cfr13I GGNCC 4 cut(s) 49, 323, 911, 1028
Csp6I GTAC 1 cut(s) 929
CviAII CATG 6 cut(s) 82, 289, 596, 610, 890, 1111
CviQI GTAC 1 cut(s) 929
DdeI CTNAG 2 cut(s) 255, 651
DpnI GATC 5 cut(s) 212, 315, 429, 447, 1006
DpnII GATC 5 cut(s) 210, 313, 427, 445, 1004
EaeI YGGCCR 1 cut(s) 1050
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Eco31I GGTCTC 1 cut(s) 1183
Eco47I GGWCC 1 cut(s) 1028
Eco81I CCTNAGG 1 cut(s) 651
Eco88I CYCGRG 1 cut(s) 439
EcoNI CCTNNNNNAGG 1 cut(s) 654
EcoRII CCWGG 3 cut(s) 1013, 1030, 1047
FaeI CATG 6 cut(s) 85, 292, 599, 613, 893, 1114
FalI AAGNNNNNCTT 2 cut(s) 924, 956
FaqI GGGAC 2 cut(s) 620, 887
FatI CATG 6 cut(s) 81, 288, 595, 609, 889, 1110
FauI CCCGC 2 cut(s) 172, 365
FblI GTMKAC 1 cut(s) 668
Fnu4HI GCNGC 5 cut(s) 79, 286, 506, 614, 1136
Fsp4HI GCNGC 5 cut(s) 79, 286, 506, 614, 1136
FspBI CTAG 2 cut(s) 449, 708
GlaI GCGC 2 cut(s) 124, 1134
GluI GCNGC 5 cut(s) 79, 286, 506, 614, 1136
GsaI CCCAGC 1 cut(s) 152
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 4 cut(s) 50, 325, 912, 1052
HapII CCGG 1 cut(s) 10
HhaI GCGC 2 cut(s) 125, 1135
Hin1II CATG 6 cut(s) 85, 292, 599, 613, 893, 1114
Hin6I GCGC 2 cut(s) 123, 1133
HinP1I GCGC 2 cut(s) 123, 1133
HindIII AAGCTT 1 cut(s) 865
HinfI GANTC 8 cut(s) 20, 338, 437, 623, 748, 875, 970, 1215
HpaII CCGG 1 cut(s) 10
HphI GGTGA 4 cut(s) 164, 176, 206, 398
Hpy166II GTNNAC 4 cut(s) 459, 669, 698, 986
Hpy188I TCNGA 3 cut(s) 25, 145, 998
Hpy188III TCNNGA 4 cut(s) 109, 465, 803, 1103
Hpy8I GTNNAC 4 cut(s) 459, 669, 698, 986
HpyAV CCTTC 5 cut(s) 62, 185, 577, 613, 993
HpyCH4III ACNGT 2 cut(s) 1084, 1206
HpyF10VI GCNNNNNNNGC 5 cut(s) 47, 131, 223, 430, 864
HpyF3I CTNAG 2 cut(s) 255, 651
Hsp92II CATG 6 cut(s) 85, 292, 599, 613, 893, 1114
HspAI GCGC 2 cut(s) 123, 1133
KroI GCCGGC 1 cut(s) 9
KroNI GCCGGC 1 cut(s) 11
Kzo9I GATC 5 cut(s) 210, 313, 427, 445, 1004
LmnI GCTCC 4 cut(s) 139, 223, 421, 907
Lsp1109I GCAGC 5 cut(s) 65, 272, 517, 625, 1147
LweI GCATC 1 cut(s) 226
MaeI CTAG 2 cut(s) 449, 708
MaeIII GTNAC 2 cut(s) 563, 1163
MalI GATC 5 cut(s) 212, 315, 429, 447, 1006
MboI GATC 5 cut(s) 210, 313, 427, 445, 1004
MboII GAAGA 7 cut(s) 200, 264, 599, 653, 743, 1091, 1118
MflI RGATCY 2 cut(s) 313, 445
MhlI GDGCHC 2 cut(s) 700, 781
MlsI TGGCCA 1 cut(s) 1052
MluCI AATT 6 cut(s) 138, 268, 676, 740, 839, 1116
MluNI TGGCCA 1 cut(s) 1052
MlyI GAGTC 3 cut(s) 29, 431, 869
MmeI TCCRAC 2 cut(s) 48, 1166
Mox20I TGGCCA 1 cut(s) 1052
MroNI GCCGGC 1 cut(s) 9
MroXI GAANNNNTTC 2 cut(s) 591, 645
MscI TGGCCA 1 cut(s) 1052
MseI TTAA 3 cut(s) 261, 398, 963
MslI CAYNNNNRTG 3 cut(s) 101, 717, 825
Msp20I TGGCCA 1 cut(s) 1052
MspI CCGG 1 cut(s) 10
MspR9I CCNGG 3 cut(s) 1015, 1032, 1049
MvaI CCWGG 3 cut(s) 1015, 1032, 1049
MwoI GCNNNNNNNGC 5 cut(s) 47, 131, 223, 430, 864
NaeI GCCGGC 1 cut(s) 11
NdeII GATC 5 cut(s) 210, 313, 427, 445, 1004
NgoMIV GCCGGC 1 cut(s) 9
NlaIII CATG 6 cut(s) 85, 292, 599, 613, 893, 1114
NlaIV GGNNCC 2 cut(s) 315, 423
NspI RCATGY 2 cut(s) 85, 613
OliI CACNNNNGTG 1 cut(s) 717
PaeI GCATGC 1 cut(s) 85
PdiI GCCGGC 1 cut(s) 11
PdmI GAANNNNTTC 2 cut(s) 591, 645
PfeI GAWTC 5 cut(s) 338, 623, 748, 970, 1215
PflFI GACNNNGTC 1 cut(s) 19
PkrI GCNGC 5 cut(s) 80, 287, 507, 615, 1137
PleI GAGTC 3 cut(s) 28, 431, 869
PpsI GAGTC 3 cut(s) 28, 431, 869
PshAI GACNNNNGTC 1 cut(s) 30
Psp6I CCWGG 3 cut(s) 1013, 1030, 1047
PspFI CCCAGC 1 cut(s) 148
PspGI CCWGG 3 cut(s) 1013, 1030, 1047
PspN4I GGNNCC 2 cut(s) 315, 423
PspPI GGNCC 4 cut(s) 49, 323, 911, 1028
PsrI GAACNNNNNNTAC 2 cut(s) 652, 684
PsuI RGATCY 2 cut(s) 313, 445
PsyI GACNNNGTC 1 cut(s) 19
RsaI GTAC 1 cut(s) 930
RsaNI GTAC 1 cut(s) 929
RseI CAYNNNNRTG 3 cut(s) 101, 717, 825
SaqAI TTAA 3 cut(s) 261, 398, 963
SatI GCNGC 5 cut(s) 79, 286, 506, 614, 1136
Sau3AI GATC 5 cut(s) 210, 313, 427, 445, 1004
Sau96I GGNCC 4 cut(s) 49, 323, 911, 1028
SchI GAGTC 3 cut(s) 29, 431, 869
ScrFI CCNGG 3 cut(s) 1015, 1032, 1049
SduI GDGCHC 2 cut(s) 700, 781
SfaNI GCATC 1 cut(s) 226
SinI GGWCC 1 cut(s) 1028
SmiMI CAYNNNNRTG 3 cut(s) 101, 717, 825
SmlI CTYRAG 1 cut(s) 803
SmoI CTYRAG 1 cut(s) 803
SphI GCATGC 1 cut(s) 85
Sse9I AATT 6 cut(s) 138, 268, 676, 740, 839, 1116
SsiI CCGC 3 cut(s) 162, 179, 372
SspMI CTAG 2 cut(s) 449, 708
StyD4I CCNGG 3 cut(s) 1013, 1030, 1047
TaaI ACNGT 2 cut(s) 1084, 1206
TaqI TCGA 1 cut(s) 213
TaqII GACCGA 2 cut(s) 20, 32
TasI AATT 6 cut(s) 138, 268, 676, 740, 839, 1116
TatI WGTACW 1 cut(s) 928
TfiI GAWTC 5 cut(s) 338, 623, 748, 970, 1215
Tru1I TTAA 3 cut(s) 261, 398, 963
Tru9I TTAA 3 cut(s) 261, 398, 963
TseI GCWGC 5 cut(s) 78, 285, 505, 613, 1135
TspDTI ATGAA 5 cut(s) 85, 564, 584, 615, 1188
Tth111I GACNNNGTC 1 cut(s) 19
VneI GTGCAC 1 cut(s) 696
VpaK11BI GGWCC 1 cut(s) 1028
XagI CCTNNNNNAGG 1 cut(s) 654
XapI RAATTY 1 cut(s) 740
XceI RCATGY 2 cut(s) 85, 613
XmiI GTMKAC 1 cut(s) 668
XmnI GAANNNNTTC 2 cut(s) 591, 645
XspI CTAG 2 cut(s) 449, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.