Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003640

Physical Location & Seq

Genomic Coordinates Forward (+)

4904671 .. 4908570

Gene Structure 3900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03920.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGGTCGGAAGCAAAACGACCCAGAAGCCACCCATTACTTCTCTTTCGTCCTCCTCTTGGTGGTTTTGGTTTCCTGTGCTCTGGTCTACACATTCGTCTCTGCGGTGCTTAAACCCAATGACGCCTCTTCATTCTCGGAGCTCGAGTCGTTGACGTTGGTTGAGGAGGGCGGCGGCGTTGGGGTGGAGGGGGAGAGTGGTGGCGGGTGTTGCAGAGGGACTGAGAATTTGGAGCTGTGGGGGGCTGCCGTGAAGTGGGGTTCTGAGTTTAAGTTCAGTTCTTCTGAGGAATGCTGCAAGGCGTGTAAATCCATGTGTACTGGGACTGATGGGCCTTGCTTGTGTGATTCTTGGGTGTTTTGTGGGAACAAGGAGGCTTGCGGCTCCAAATTTGGTGAGTGCTGGTTGAAGAAACAGAAAGATACATTGGCACCACAGCGCCAGGAAGTAGGGGAAACAGTTATGTGGACTTCTGGACTCATCTTTGGGAAAGGAGAGGGCATTGTTGGCTTGGAAACAGAATATGGAACTCTTCATATAAAACTTTTCCCTGAATGTGCCCCTCATTCTGTAGCCTACATTCTTGAGTTGTTGGCATTGCGCCATTGTGCAGGCTGCCAGTTTTATCGTGCAGAGAGCCGAGGGCAATCATGGGATTCAGAAGGAAACCACATAAAAAATACTCCTTTTGGCCCTCCATTTGCACTGGTTCAAGGAACACTAGAAGCCCAAGGAGGCACATTTACGAAGATTCCGACTGAAGTTTGCCCGACCATTAGAAGGGGTTCGGTAGCGTGGATTGGTTCTGGCCCAGAATTTTTCATAAGCCTAGCAAATCACGTAGAGTGGAAAAAAGACTACACTGTCTTTGCTTCTGTTCTTCCAGAAGACATGAACATCGCCGAGAAAATTGCTCAACTTCCGACCACTCCAGAGGTTTGGAACAGTATCAATGTGACCGTCTTGGAAAAGCCGGTTCCCTTGCTTCTGCGAAGAATCAAGACGAGTCATGGAGATCTCACTGCAAACATGAAATCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAN_4 Pro_isomerase

Protein Analysis

348

Amino Acids

37.81

Weight (kDa)

5.4

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17070
fragaria_vesca	FvH4_5g20480 FvH4_5g20480 FvH4_7g09211
malus_domestica	MD06G1046500.v1.1 MD07G1096900.v1.1 MD07G1097200.v1.1
prunus_persica	Prupe.2G121100_v2.0.a1 Prupe.2G121100_v2.0.a1 Prupe.2G121100_v2.0.a1 Prupe.5G054800_v2.0.a1
pyrus_communis	pycom06g03920 pycom07g08000
rosa_chinensis	RchiOBHm_Chr1g0345271 RchiOBHm_Chr7g0205801
rosa_laevigata	RLG00000003353 RLG00000028842
rosa_multiflora	Rmu_sc0000076.1_g000049 Rmu_sc0002329.1_g000010 Rmu_sc0008518.1_g000009 Rmu_sc0011244.1_g000002
rosa_roxburghii	Rroxscaffold_3G00251970 Rroxscaffold_4G00309140
rosa_rugosa	Rorug01G0177100 Rorug07G0093200
rosa_samantha	Rh1AG195200 Rh1BG161300 Rh1CG179600 Rh1DG191700 Rh7AG224700 Rh7BG219900 Rh7CG238400 Rh7DG231400
rosa_wichuraiana	Rw1G016080 Rw7G019380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	863
AccB1I	GGYRCC	1 cut(s)	430
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	5 cut(s)	104, 171, 174, 204, 381
AcsI	RAATTY	3 cut(s)	226, 389, 815
AcuI	CTGAAG	1 cut(s)	780
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	4 cut(s)	58, 61, 255, 780
AgsI	TTSAA	2 cut(s)	409, 713
AjnI	CCWGG	1 cut(s)	441
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	2 cut(s)	142, 235
AluI	AGCT	2 cut(s)	142, 235
Alw21I	GWGCWC	2 cut(s)	82, 144
Alw26I	GTCTC	1 cut(s)	103
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	3 cut(s)	332, 691, 808
ApeKI	GCWGC	3 cut(s)	245, 294, 615
ApoI	RAATTY	3 cut(s)	226, 389, 815
ArsI	GACNNNNNNTTYG	2 cut(s)	211, 243
Asp700I	GAANNNNTTC	1 cut(s)	784
AspLEI	GCGC	2 cut(s)	441, 603
AspS9I	GGNCC	3 cut(s)	332, 692, 809
AsuHPI	GGTGA	1 cut(s)	407
AvaI	CYCGRG	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	562
BanI	GGYRCC	1 cut(s)	430
BanII	GRGCYC	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	894
Bbv12I	GWGCWC	2 cut(s)	82, 144
BbvI	GCAGC	3 cut(s)	232, 281, 602
BccI	CCATC	1 cut(s)	323
BceAI	ACGGC	1 cut(s)	233
BcgI	CGANNNNNNTGC	2 cut(s)	893, 927
BciT130I	CCWGG	1 cut(s)	443
BcoDI	GTCTC	1 cut(s)	103
BfaI	CTAG	2 cut(s)	722, 830
BfmI	CTRYAG	1 cut(s)	570
BfoI	RGCGCY	1 cut(s)	442
BglII	AGATCT	1 cut(s)	1015
BisI	GCNGC	6 cut(s)	172, 175, 246, 295, 382, 616
BlsI	GCNGC	6 cut(s)	173, 176, 247, 296, 383, 617
Bme1390I	CCNGG	1 cut(s)	443
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	3 cut(s)	332, 692, 809
BmiI	GGNNCC	3 cut(s)	385, 432, 978
BmrFI	CCNGG	1 cut(s)	443
BmrI	ACTGGG	1 cut(s)	330
BmuI	ACTGGG	1 cut(s)	330
BpiI	GAAGAC	1 cut(s)	894
BpmI	CTGGAG	1 cut(s)	915
BpuEI	CTTGAG	1 cut(s)	605
BsaAI	YACGTR	1 cut(s)	841
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	640, 730
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 61, 255, 780
Bse118I	RCCGGY	1 cut(s)	973
Bse1I	ACTGG	3 cut(s)	325, 619, 711
Bse3DI	GCAATG	1 cut(s)	596
BseBI	CCWGG	1 cut(s)	443
BseDI	CCNNGG	2 cut(s)	640, 730
BseLI	CCNNNNNNNGG	4 cut(s)	58, 61, 255, 780
BseMI	GCAATG	1 cut(s)	596
BseMII	CTCAG	3 cut(s)	213, 255, 276
BseNI	ACTGG	3 cut(s)	325, 619, 711
BseRI	GAGGAG	2 cut(s)	44, 179
BseSI	GKGCMC	1 cut(s)	562
BseXI	GCAGC	3 cut(s)	232, 281, 602
BsgI	GTGCAG	2 cut(s)	630, 651
BshFI	GGCC	3 cut(s)	334, 693, 810
BshNI	GGYRCC	1 cut(s)	430
BsiHKAI	GWGCWC	2 cut(s)	82, 144
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	974
BslFI	GGGAC	2 cut(s)	232, 337
BslI	CCNNNNNNNGG	4 cut(s)	58, 61, 255, 780
BsmAI	GTCTC	1 cut(s)	103
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	2 cut(s)	232, 337
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	3 cut(s)	334, 693, 810
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	3 cut(s)	82, 144, 562
Bsp143I	GATC	1 cut(s)	1015
BspACI	CCGC	5 cut(s)	104, 171, 174, 204, 381
BspANI	GGCC	3 cut(s)	334, 693, 810
BspCNI	CTCAG	3 cut(s)	214, 256, 277
BspLI	GGNNCC	3 cut(s)	385, 432, 978
BspT107I	GGYRCC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	596
BsrFI	RCCGGY	1 cut(s)	973
BsrI	ACTGG	3 cut(s)	325, 619, 711
BssAI	RCCGGY	1 cut(s)	973
BssECI	CCNNGG	2 cut(s)	640, 730
BssMI	GATC	1 cut(s)	1015
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	730
Bst2UI	CCWGG	1 cut(s)	443
Bst4CI	ACNGT	4 cut(s)	460, 865, 947, 961
Bst6I	CTCTTC	2 cut(s)	133, 537
BstACI	GRCGYC	1 cut(s)	123
BstBAI	YACGTR	1 cut(s)	841
BstC8I	GCNNGC	2 cut(s)	379, 613
BstDEI	CTNAG	3 cut(s)	222, 264, 285
BstH2I	RGCGCY	1 cut(s)	442
BstHHI	GCGC	2 cut(s)	441, 603
BstKTI	GATC	1 cut(s)	1018
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	1015
BstMWI	GCNNNNNNNGC	2 cut(s)	210, 507
BstNI	CCWGG	1 cut(s)	443
BstSCI	CCNGG	1 cut(s)	441
BstSFI	CTRYAG	1 cut(s)	570
BstSLI	GKGCMC	1 cut(s)	562
BstV1I	GCAGC	3 cut(s)	232, 281, 602
BstV2I	GAAGAC	1 cut(s)	894
BstX2I	RGATCY	1 cut(s)	1015
BstXI	CCANNNNNNTGG	1 cut(s)	939
BstYI	RGATCY	1 cut(s)	1015
BsuRI	GGCC	3 cut(s)	334, 693, 810
BtgZI	GCGATG	1 cut(s)	883
BtsI	GCAGTG	1 cut(s)	1020
BtsIMutI	CAGTG	3 cut(s)	704, 861, 1020
Cac8I	GCNNGC	2 cut(s)	379, 613
CfoI	GCGC	2 cut(s)	441, 603
Cfr10I	RCCGGY	1 cut(s)	973
Cfr13I	GGNCC	3 cut(s)	332, 692, 809
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	5 cut(s)	313, 651, 892, 1010, 1030
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	3 cut(s)	222, 264, 285
DpnI	GATC	1 cut(s)	1017
DpnII	GATC	1 cut(s)	1015
DrdI	GACNNNNNNGTC	1 cut(s)	863
DseDI	GACNNNNNNGTC	1 cut(s)	863
Eam1104I	CTCTTC	2 cut(s)	133, 537
EarI	CTCTTC	2 cut(s)	133, 537
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	730
Eco24I	GRGCYC	1 cut(s)	144
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	780
Eco88I	CYCGRG	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	730
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	730
Esp3I	CGTCTC	1 cut(s)	103
FaeI	CATG	5 cut(s)	316, 654, 895, 1013, 1033
FaqI	GGGAC	2 cut(s)	232, 337
FatI	CATG	5 cut(s)	312, 650, 891, 1009, 1029
FauI	CCCGC	1 cut(s)	197
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	6 cut(s)	172, 175, 246, 295, 382, 616
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	6 cut(s)	172, 175, 246, 295, 382, 616
FspBI	CTAG	2 cut(s)	722, 830
GlaI	GCGC	2 cut(s)	440, 602
GluI	GCNGC	6 cut(s)	172, 175, 246, 295, 382, 616
GsuI	CTGGAG	1 cut(s)	915
HaeII	RGCGCY	1 cut(s)	442
HaeIII	GGCC	3 cut(s)	334, 693, 810
HapII	CCGG	1 cut(s)	974
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	2 cut(s)	441, 603
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	5 cut(s)	316, 654, 895, 1013, 1033
Hin6I	GCGC	2 cut(s)	439, 601
HinP1I	GCGC	2 cut(s)	439, 601
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HinfI	GANTC	7 cut(s)	146, 347, 477, 656, 751, 996, 1006
HpaII	CCGG	1 cut(s)	974
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	4 cut(s)	88, 153, 318, 468
Hpy188I	TCNGA	7 cut(s)	9, 139, 265, 286, 661, 756, 924
Hpy188III	TCNNGA	5 cut(s)	474, 584, 884, 932, 1000
Hpy8I	GTNNAC	4 cut(s)	88, 153, 318, 468
HpyAV	CCTTC	2 cut(s)	656, 774
HpyCH4III	ACNGT	4 cut(s)	460, 865, 947, 961
HpyCH4IV	ACGT	2 cut(s)	155, 840
HpyCH4V	TGCA	6 cut(s)	213, 297, 611, 632, 704, 1025
HpyF10VI	GCNNNNNNNGC	2 cut(s)	210, 507
HpyF3I	CTNAG	3 cut(s)	222, 264, 285
HpySE526I	ACGT	2 cut(s)	155, 840
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	5 cut(s)	316, 654, 895, 1013, 1033
HspAI	GCGC	2 cut(s)	439, 601
Kzo9I	GATC	1 cut(s)	1015
LmnI	GCTCC	3 cut(s)	139, 232, 389
Lsp1109I	GCAGC	3 cut(s)	232, 281, 602
MaeI	CTAG	2 cut(s)	722, 830
MaeII	ACGT	2 cut(s)	155, 840
MaeIII	GTNAC	1 cut(s)	955
MalI	GATC	1 cut(s)	1017
MboI	GATC	1 cut(s)	1015
MboII	GAAGA	8 cut(s)	120, 273, 421, 524, 760, 872, 899, 1005
MflI	RGATCY	1 cut(s)	1015
MhlI	GDGCHC	3 cut(s)	82, 144, 562
MluCI	AATT	5 cut(s)	226, 389, 815, 909, 1039
MlyI	GAGTC	3 cut(s)	155, 471, 1015
MmeI	TCCRAC	2 cut(s)	779, 947
MroXI	GAANNNNTTC	1 cut(s)	784
MseI	TTAA	3 cut(s)	111, 270, 1042
MspI	CCGG	1 cut(s)	974
MspR9I	CCNGG	1 cut(s)	443
Mva1269I	GAATGC	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	443
MwoI	GCNNNNNNNGC	2 cut(s)	210, 507
NdeII	GATC	1 cut(s)	1015
NlaIII	CATG	5 cut(s)	316, 654, 895, 1013, 1033
NlaIV	GGNNCC	3 cut(s)	385, 432, 978
NmeAIII	GCCGAG	2 cut(s)	665, 928
NmuCI	GTSAC	1 cut(s)	955
PaeR7I	CTCGAG	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	1 cut(s)	752
PctI	GAATGC	1 cut(s)	296
PdmI	GAANNNNTTC	1 cut(s)	784
PfeI	GAWTC	4 cut(s)	347, 656, 751, 996
PkrI	GCNGC	6 cut(s)	173, 176, 247, 296, 383, 617
PleI	GAGTC	3 cut(s)	154, 471, 1014
PpsI	GAGTC	3 cut(s)	154, 471, 1014
Ppu21I	YACGTR	1 cut(s)	841
Psp124BI	GAGCTC	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	441
PspGI	CCWGG	1 cut(s)	441
PspN4I	GGNNCC	3 cut(s)	385, 432, 978
PspPI	GGNCC	3 cut(s)	332, 692, 809
PspXI	VCTCGAGB	1 cut(s)	143
PsuI	RGATCY	1 cut(s)	1015
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
SacI	GAGCTC	1 cut(s)	144
SaqAI	TTAA	3 cut(s)	111, 270, 1042
SatI	GCNGC	6 cut(s)	172, 175, 246, 295, 382, 616
Sau3AI	GATC	1 cut(s)	1015
Sau96I	GGNCC	3 cut(s)	332, 692, 809
SchI	GAGTC	3 cut(s)	155, 471, 1015
ScrFI	CCNGG	1 cut(s)	443
SduI	GDGCHC	3 cut(s)	82, 144, 562
SetI	ASST	5 cut(s)	144, 158, 237, 843, 939
SfcI	CTRYAG	1 cut(s)	570
Sfr274I	CTCGAG	1 cut(s)	143
SlaI	CTCGAG	1 cut(s)	143
SmlI	CTYRAG	2 cut(s)	143, 584
SmoI	CTYRAG	2 cut(s)	143, 584
Sse9I	AATT	5 cut(s)	226, 389, 815, 909, 1039
SsiI	CCGC	5 cut(s)	104, 171, 174, 204, 381
SspMI	CTAG	2 cut(s)	722, 830
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	441
StyI	CCWWGG	1 cut(s)	730
TaaI	ACNGT	4 cut(s)	460, 865, 947, 961
TaiI	ACGT	2 cut(s)	158, 843
TaqI	TCGA	1 cut(s)	144
TasI	AATT	5 cut(s)	226, 389, 815, 909, 1039
TatI	WGTACW	1 cut(s)	317
TauI	GCSGC	3 cut(s)	174, 177, 384
TfiI	GAWTC	4 cut(s)	347, 656, 751, 996
Tru1I	TTAA	3 cut(s)	111, 270, 1042
Tru9I	TTAA	3 cut(s)	111, 270, 1042
TscAI	CASTG	3 cut(s)	711, 868, 1027
TseFI	GTSAC	1 cut(s)	955
TseI	GCWGC	3 cut(s)	245, 294, 615
Tsp45I	GTSAC	1 cut(s)	955
TspDTI	ATGAA	4 cut(s)	120, 524, 811, 908
TspRI	CASTG	3 cut(s)	711, 868, 1027
XapI	RAATTY	3 cut(s)	226, 389, 815
XhoI	CTCGAG	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	87
XmnI	GAANNNNTTC	1 cut(s)	784
XspI	CTAG	2 cut(s)	722, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.