Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003640

Physical Location & Seq

Genomic Coordinates Forward (+)

5850757 .. 5855250

Gene Structure 4494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G054800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGGTCGGAGGCAAAACGACCCAGAAGCCACCCATTGCTCTCCTCTCGTCCTCCTCTTGGTGGGTTTGGCTTCCTGTGCTCTGGTCTACGCTGCCCTCTGTGTAGTGCTTAAACCCAATGAAGCCTCTTCATTTTCCGAGCTTGAGTCCCTGGAATTGGTGGAGGAGGGTGGAGGTGTTGGGGTGGAGGGAGAGAGTGGAGCATGTTGCAGAGGGACTGAGAATTTGGAGCTCTGGGGGGCTGCTGTGAAGTGGGGTTCAGAGTTTAAGTTCAATTCTTCTGAGCAGTGTTGCAAGGCATGTAAAGCCATGTGTACTGGGACTGATGGGCCTTGTTTGTGTGATAGCTGGGTTTTCTGTGGGAACAAGGAGGCATGTGGCTCAAAATTTGGTGAGTGCTGGCTGAAGAAACAGAAAGATACATTGGCTCCTGAGCGGCAGGAAGTAGGGGAAACAGTTAGTTGGACTTCTGGACTCATCTTTGGGAGAGGAGAGGGCATTGTTGGCTTGGAAACAAAGTATGGAACTCTTCATATAAAACTTTTGCCTGACTGTGCCCCTCATTCTGTAGCCTACATTCTTGAGTTGTTGGCATTGCGCCATTGTGCAGGCTGCCAGTTTTATCGTGCAGAGAGACGTGGGTCATCATGGGATTCAGAAGGAAACCACATAAAAAATGCTCCTTTTGGTCCTCCTTTTGCACTGGTTCAAGGAACACTTGATGCCCAAGGAGTGATATTTAAGAAGATTCCAACTGAGGTTTGCCCAACCATAAGAAGGGGTTCGGTTGCGTGGATTGGTTCTGGCCCGGAATTTTTTATAAGCCTTGCAAACCACGAAGAGTGGAAAAAAGAATACACCGTCTTTGCTTCTGTTCTTCCAGAAGACATGAACATCGCTGAGAAAATTGCTCAACTTCCCACCACAGCTGATGTTTGGAACAGTATCAATGTATCTGTCTTGGAAAAGCCTGTTCCCTTGTTCTTGCGAAGGATGAAGACAAGTCATGGAGATCTCACCGCAAACATGAAATCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAN_4 Pro_isomerase

Protein Analysis

347

Amino Acids

37.63

Weight (kDa)

5.63

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17070
fragaria_vesca	FvH4_5g20480 FvH4_5g20480 FvH4_7g09211
malus_domestica	MD06G1046500.v1.1 MD07G1096900.v1.1 MD07G1097200.v1.1
prunus_persica	Prupe.2G121100_v2.0.a1 Prupe.2G121100_v2.0.a1 Prupe.2G121100_v2.0.a1 Prupe.5G054800_v2.0.a1
pyrus_communis	pycom06g03920 pycom07g08000
rosa_chinensis	RchiOBHm_Chr1g0345271 RchiOBHm_Chr7g0205801
rosa_laevigata	RLG00000003353 RLG00000028842
rosa_multiflora	Rmu_sc0000076.1_g000049 Rmu_sc0002329.1_g000010 Rmu_sc0008518.1_g000009 Rmu_sc0011244.1_g000002
rosa_roxburghii	Rroxscaffold_3G00251970 Rroxscaffold_4G00309140
rosa_rugosa	Rorug01G0177100 Rorug07G0093200
rosa_samantha	Rh1AG195200 Rh1BG161300 Rh1CG179600 Rh1DG191700 Rh7AG224700 Rh7BG219900 Rh7CG238400 Rh7DG231400
rosa_wichuraiana	Rw1G016080 Rw7G019380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	821
AccBSI	CCGCTC	1 cut(s)	436
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	2 cut(s)	436, 1020
AcsI	RAATTY	3 cut(s)	223, 386, 812
AcuI	CTGAAG	1 cut(s)	425
AfaI	GTAC	1 cut(s)	316
AfiI	CCNNNNNNNGG	4 cut(s)	58, 61, 157, 777
AgsI	TTSAA	2 cut(s)	274, 710
AjiI	CACGTC	1 cut(s)	638
AjnI	CCWGG	1 cut(s)	150
AjuI	GAANNNNNNNTTGG	2 cut(s)	407, 439
AluBI	AGCT	4 cut(s)	142, 232, 348, 929
AluI	AGCT	4 cut(s)	142, 232, 348, 929
Alw21I	GWGCWC	2 cut(s)	82, 234
Alw26I	GTCTC	1 cut(s)	628
AoxI	GGCC	2 cut(s)	329, 805
ApeKI	GCWGC	3 cut(s)	92, 242, 612
ApoI	RAATTY	3 cut(s)	223, 386, 812
ArsI	GACNNNNNNTTYG	2 cut(s)	208, 240
Asp700I	GAANNNNTTC	1 cut(s)	781
AspLEI	GCGC	1 cut(s)	600
AspS9I	GGNCC	3 cut(s)	329, 689, 806
AsuC2I	CCSGG	1 cut(s)	809
AsuHPI	GGTGA	2 cut(s)	404, 1009
AvaII	GGWCC	1 cut(s)	689
BaeGI	GKGCMC	1 cut(s)	559
BanII	GRGCYC	1 cut(s)	234
BbsI	GAAGAC	2 cut(s)	891, 1004
Bbv12I	GWGCWC	2 cut(s)	82, 234
BbvI	GCAGC	3 cut(s)	79, 229, 599
BccI	CCATC	1 cut(s)	320
BciT130I	CCWGG	1 cut(s)	152
BcnI	CCSGG	1 cut(s)	809
BcoDI	GTCTC	1 cut(s)	628
BfmI	CTRYAG	1 cut(s)	567
BglII	AGATCT	1 cut(s)	1012
BisI	GCNGC	4 cut(s)	93, 243, 437, 613
BlsI	GCNGC	4 cut(s)	94, 244, 438, 614
Bme1390I	CCNGG	2 cut(s)	152, 809
Bme18I	GGWCC	1 cut(s)	689
BmgBI	CACGTC	1 cut(s)	638
BmgT120I	GGNCC	3 cut(s)	329, 689, 806
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	2 cut(s)	152, 809
BmrI	ACTGGG	1 cut(s)	327
BmsI	GCATC	1 cut(s)	712
BmuI	ACTGGG	1 cut(s)	327
BoxI	GACNNNNGTC	1 cut(s)	640
BpiI	GAAGAC	2 cut(s)	891, 1004
Bpu10I	CCTNAGC	1 cut(s)	432
BpuEI	CTTGAG	2 cut(s)	164, 602
BpuMI	CCSGG	1 cut(s)	809
BsaJI	CCNNGG	2 cut(s)	150, 727
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 61, 157, 777
Bse1I	ACTGG	3 cut(s)	322, 616, 708
Bse3DI	GCAATG	2 cut(s)	34, 593
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	150, 727
BseGI	GGATG	1 cut(s)	999
BseLI	CCNNNNNNNGG	4 cut(s)	58, 61, 157, 777
BseMI	GCAATG	2 cut(s)	34, 593
BseMII	CTCAG	5 cut(s)	210, 273, 423, 747, 891
BseNI	ACTGG	3 cut(s)	322, 616, 708
BseRI	GAGGAG	4 cut(s)	33, 44, 179, 504
BseSI	GKGCMC	1 cut(s)	559
BseXI	GCAGC	3 cut(s)	79, 229, 599
BseYI	CCCAGC	1 cut(s)	348
BsgI	GTGCAG	2 cut(s)	627, 648
BshFI	GGCC	2 cut(s)	331, 807
BsiHKAI	GWGCWC	2 cut(s)	82, 234
BsiSI	CCGG	1 cut(s)	809
BslFI	GGGAC	3 cut(s)	133, 229, 334
BslI	CCNNNNNNNGG	4 cut(s)	58, 61, 157, 777
BsmAI	GTCTC	1 cut(s)	628
BsmBI	CGTCTC	1 cut(s)	628
BsmFI	GGGAC	3 cut(s)	133, 229, 334
BsnI	GGCC	2 cut(s)	331, 807
Bsp1286I	GDGCHC	3 cut(s)	82, 234, 559
Bsp143I	GATC	1 cut(s)	1012
BspACI	CCGC	2 cut(s)	436, 1020
BspANI	GGCC	2 cut(s)	331, 807
BspCNI	CTCAG	5 cut(s)	211, 274, 424, 748, 892
BspLI	GGNNCC	1 cut(s)	429
BsrBI	CCGCTC	1 cut(s)	436
BsrDI	GCAATG	2 cut(s)	34, 593
BsrI	ACTGG	3 cut(s)	322, 616, 708
BssECI	CCNNGG	2 cut(s)	150, 727
BssMI	GATC	1 cut(s)	1012
BssT1I	CCWWGG	1 cut(s)	727
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	4 cut(s)	457, 554, 862, 944
Bst6I	CTCTTC	3 cut(s)	133, 534, 834
BstC8I	GCNNGC	2 cut(s)	401, 610
BstDEI	CTNAG	5 cut(s)	219, 282, 432, 756, 900
BstF5I	GGATG	1 cut(s)	999
BstHHI	GCGC	1 cut(s)	600
BstKTI	GATC	1 cut(s)	1015
BstMAI	GTCTC	1 cut(s)	628
BstMBI	GATC	1 cut(s)	1012
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 305, 504
BstNI	CCWGG	1 cut(s)	152
BstNSI	RCATGY	3 cut(s)	207, 303, 378
BstPAI	GACNNNNGTC	1 cut(s)	640
BstSCI	CCNGG	2 cut(s)	150, 807
BstSFI	CTRYAG	1 cut(s)	567
BstSLI	GKGCMC	1 cut(s)	559
BstV1I	GCAGC	3 cut(s)	79, 229, 599
BstV2I	GAAGAC	2 cut(s)	891, 1004
BstX2I	RGATCY	1 cut(s)	1012
BstYI	RGATCY	1 cut(s)	1012
BsuRI	GGCC	2 cut(s)	331, 807
BtgZI	GCGATG	1 cut(s)	880
BtrI	CACGTC	1 cut(s)	638
BtsCI	GGATG	1 cut(s)	999
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	2 cut(s)	293, 701
Cac8I	GCNNGC	2 cut(s)	401, 610
CfoI	GCGC	1 cut(s)	600
Cfr13I	GGNCC	3 cut(s)	329, 689, 806
Csp6I	GTAC	1 cut(s)	315
CviAII	CATG	8 cut(s)	204, 300, 310, 375, 648, 889, 1007, 1027
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	5 cut(s)	219, 282, 432, 756, 900
DpnI	GATC	1 cut(s)	1014
DpnII	GATC	1 cut(s)	1012
Eam1104I	CTCTTC	3 cut(s)	133, 534, 834
EarI	CTCTTC	3 cut(s)	133, 534, 834
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	727
Eco24I	GRGCYC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	689
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	425
EcoICRI	GAGCTC	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	727
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	727
Esp3I	CGTCTC	1 cut(s)	628
FaeI	CATG	8 cut(s)	207, 303, 313, 378, 651, 892, 1010, 1030
FalI	AAGNNNNNCTT	2 cut(s)	702, 734
FaqI	GGGAC	3 cut(s)	133, 229, 334
FatI	CATG	8 cut(s)	203, 299, 309, 374, 647, 888, 1006, 1026
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	4 cut(s)	93, 243, 437, 613
FokI	GGATG	1 cut(s)	1006
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	4 cut(s)	93, 243, 437, 613
GlaI	GCGC	1 cut(s)	599
GluI	GCNGC	4 cut(s)	93, 243, 437, 613
GsaI	CCCAGC	1 cut(s)	352
HaeIII	GGCC	2 cut(s)	331, 807
HapII	CCGG	1 cut(s)	809
HhaI	GCGC	1 cut(s)	600
Hin1II	CATG	8 cut(s)	207, 303, 313, 378, 651, 892, 1010, 1030
Hin6I	GCGC	1 cut(s)	598
HinP1I	GCGC	1 cut(s)	598
HinfI	GANTC	4 cut(s)	146, 474, 653, 748
HpaII	CCGG	1 cut(s)	809
HphI	GGTGA	2 cut(s)	404, 1009
Hpy166II	GTNNAC	2 cut(s)	88, 315
Hpy188I	TCNGA	5 cut(s)	9, 139, 262, 283, 658
Hpy188III	TCNNGA	4 cut(s)	431, 471, 581, 881
Hpy8I	GTNNAC	2 cut(s)	88, 315
HpyAV	CCTTC	3 cut(s)	653, 771, 984
HpyCH4III	ACNGT	4 cut(s)	457, 554, 862, 944
HpyCH4IV	ACGT	1 cut(s)	637
HpyCH4V	TGCA	6 cut(s)	210, 294, 608, 629, 701, 830
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 305, 504
HpyF3I	CTNAG	5 cut(s)	219, 282, 432, 756, 900
HpySE526I	ACGT	1 cut(s)	637
Hsp92II	CATG	8 cut(s)	207, 303, 313, 378, 651, 892, 1010, 1030
HspAI	GCGC	1 cut(s)	598
Kzo9I	GATC	1 cut(s)	1012
LmnI	GCTCC	4 cut(s)	200, 229, 433, 685
Lsp1109I	GCAGC	3 cut(s)	79, 229, 599
LweI	GCATC	1 cut(s)	712
MaeII	ACGT	1 cut(s)	637
MalI	GATC	1 cut(s)	1014
MbiI	CCGCTC	1 cut(s)	436
MboI	GATC	1 cut(s)	1012
MboII	GAAGA	9 cut(s)	120, 270, 418, 521, 757, 851, 869, 896, 1009
MflI	RGATCY	1 cut(s)	1012
MhlI	GDGCHC	3 cut(s)	82, 234, 559
MluCI	AATT	7 cut(s)	155, 223, 274, 386, 812, 906, 1036
MlyI	GAGTC	2 cut(s)	155, 468
MmeI	TCCRAC	2 cut(s)	443, 776
MroXI	GAANNNNTTC	1 cut(s)	781
MseI	TTAA	4 cut(s)	111, 267, 741, 1039
MspA1I	CMGCKG	1 cut(s)	929
MspI	CCGG	1 cut(s)	809
MspR9I	CCNGG	2 cut(s)	152, 809
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	3 cut(s)	77, 305, 504
NciI	CCSGG	1 cut(s)	809
NdeII	GATC	1 cut(s)	1012
NlaIII	CATG	8 cut(s)	207, 303, 313, 378, 651, 892, 1010, 1030
NlaIV	GGNNCC	1 cut(s)	429
NspI	RCATGY	3 cut(s)	207, 303, 378
PdmI	GAANNNNTTC	1 cut(s)	781
PfeI	GAWTC	2 cut(s)	653, 748
PkrI	GCNGC	4 cut(s)	94, 244, 438, 614
PleI	GAGTC	2 cut(s)	154, 468
PpsI	GAGTC	2 cut(s)	154, 468
PshAI	GACNNNNGTC	1 cut(s)	640
PsiI	TTATAA	1 cut(s)	821
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	150
PspFI	CCCAGC	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	3 cut(s)	329, 689, 806
PsuI	RGATCY	1 cut(s)	1012
PvuII	CAGCTG	1 cut(s)	929
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	4 cut(s)	111, 267, 741, 1039
SatI	GCNGC	4 cut(s)	93, 243, 437, 613
Sau3AI	GATC	1 cut(s)	1012
Sau96I	GGNCC	3 cut(s)	329, 689, 806
SchI	GAGTC	2 cut(s)	155, 468
ScrFI	CCNGG	2 cut(s)	152, 809
SduI	GDGCHC	3 cut(s)	82, 234, 559
SetI	ASST	7 cut(s)	144, 178, 234, 350, 640, 762, 931
SfaNI	GCATC	1 cut(s)	712
SfcI	CTRYAG	1 cut(s)	567
SinI	GGWCC	1 cut(s)	689
SmlI	CTYRAG	2 cut(s)	143, 581
SmoI	CTYRAG	2 cut(s)	143, 581
Sse9I	AATT	7 cut(s)	155, 223, 274, 386, 812, 906, 1036
SsiI	CCGC	2 cut(s)	436, 1020
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	2 cut(s)	150, 807
StyI	CCWWGG	1 cut(s)	727
TaaI	ACNGT	4 cut(s)	457, 554, 862, 944
TaiI	ACGT	1 cut(s)	640
TasI	AATT	7 cut(s)	155, 223, 274, 386, 812, 906, 1036
TatI	WGTACW	1 cut(s)	314
TauI	GCSGC	1 cut(s)	439
TfiI	GAWTC	2 cut(s)	653, 748
Tru1I	TTAA	4 cut(s)	111, 267, 741, 1039
Tru9I	TTAA	4 cut(s)	111, 267, 741, 1039
TscAI	CASTG	2 cut(s)	293, 708
TseI	GCWGC	3 cut(s)	92, 242, 612
TspDTI	ATGAA	5 cut(s)	120, 135, 521, 905, 1010
TspRI	CASTG	2 cut(s)	293, 708
VpaK11BI	GGWCC	1 cut(s)	689
XapI	RAATTY	3 cut(s)	223, 386, 812
XceI	RCATGY	3 cut(s)	207, 303, 378
XmiI	GTMKAC	1 cut(s)	87
XmnI	GAANNNNTTC	1 cut(s)	781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.