Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003640

Physical Location & Seq

Genomic Coordinates Reverse (-)

21087437 .. 21091261

Gene Structure 3825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG224700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGGTCGGAGGCAGAACGACCCAGAAGCCACCCATTACTCCACTCCCTTCCTCCTCTGGGTGGGTCTGGTCTCCTGTGCTCTGGTCTACGCTCTTCTCTCTGTGGTGCTTAAACCCAATGCGCCTGAGCTCGGGTCAATGGCATTGGTGGAACAGAGTGGGGAGAAGGGAGAGAGTGATAGGGGGTGTTGCAGAGGGATTGAGAATTTGGAGCTGTGGGGTGCAGCTGTGAAGTGGGGTTCTGAGTTTAAGTTCAATTCTTCTGAGCAGTGTTGCCAGGCTTGTAAAGCAATGTGTACTGGGACTGATGGGCCTTGTTTGTGTGATAGTTGGGTCTTCTGTGGGAAGAAGGAGGCTTGTGGCTCTAAATTTGGTGAGTGCTGGTTGAAGAAGCAGAAGGATACATTGTCCCCTGAGCGCCAGGAAACAGGGGAGAAAGTTAGTTGGACATCTGGAATCATCTTTGGGAGAGGAGAGGGCATTGTTGGCTTGGAAACACAATATGGGACTCTACATATAAAACTTTTCCCTGACTGTGCCCCTCATTCTGTGGCCTACATTCTTGAGTTGTTGGAATTGCGTCATTGTGCAGGCTGCCAATTCTATCGTGCAGAGAGCCGTGGGGAATCATGGGACTCAGAAGGAAACCACATTAAAGATGTAAGACTTTACCAAAGTACATTAGTTTGTCTAAAGTTTATTTTTCTGCATGTAATGGATCAACATGGAGCAATCTGTATGCTTTTGGCATTTTGGTCTTTAGCTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAN_4 Pro_isomerase

Protein Analysis

256

Amino Acids

28.37

Weight (kDa)

5.83

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17070
fragaria_vesca	FvH4_5g20480 FvH4_5g20480 FvH4_7g09211
malus_domestica	MD06G1046500.v1.1 MD07G1096900.v1.1 MD07G1097200.v1.1
prunus_persica	Prupe.2G121100_v2.0.a1 Prupe.2G121100_v2.0.a1 Prupe.2G121100_v2.0.a1 Prupe.5G054800_v2.0.a1
pyrus_communis	pycom06g03920 pycom07g08000
rosa_chinensis	RchiOBHm_Chr1g0345271 RchiOBHm_Chr7g0205801
rosa_laevigata	RLG00000003353 RLG00000028842
rosa_multiflora	Rmu_sc0000076.1_g000049 Rmu_sc0002329.1_g000010 Rmu_sc0008518.1_g000009 Rmu_sc0011244.1_g000002
rosa_roxburghii	Rroxscaffold_3G00251970 Rroxscaffold_4G00309140
rosa_rugosa	Rorug01G0177100 Rorug07G0093200
rosa_samantha	Rh1AG195200 Rh1BG161300 Rh1CG179600 Rh1DG191700 Rh7AG224700 Rh7BG219900 Rh7CG238400 Rh7DG231400
rosa_wichuraiana	Rw1G016080 Rw7G019380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	87
AclWI	GGATC	1 cut(s)	726
AcsI	RAATTY	2 cut(s)	205, 368
AfaI	GTAC	2 cut(s)	298, 679
AfiI	CCNNNNNNNGG	3 cut(s)	58, 61, 131
AgsI	TTSAA	2 cut(s)	256, 388
AjnI	CCWGG	2 cut(s)	276, 420
AluBI	AGCT	4 cut(s)	130, 214, 227, 764
AluI	AGCT	4 cut(s)	130, 214, 227, 764
Alw21I	GWGCWC	2 cut(s)	82, 132
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	1 cut(s)	726
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	2 cut(s)	311, 552
ApeKI	GCWGC	3 cut(s)	224, 594, 764
ApoI	RAATTY	2 cut(s)	205, 368
AspLEI	GCGC	2 cut(s)	124, 420
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	1 cut(s)	386
AvaI	CYCGRG	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	541
BanII	GRGCYC	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	328
Bbv12I	GWGCWC	2 cut(s)	82, 132
BbvI	GCAGC	3 cut(s)	236, 581, 751
BccI	CCATC	1 cut(s)	302
BceAI	ACGGC	1 cut(s)	603
BciT130I	CCWGG	2 cut(s)	278, 422
BciVI	GTATCC	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	76
BfoI	RGCGCY	1 cut(s)	421
BfuI	GTATCC	1 cut(s)	394
BisI	GCNGC	3 cut(s)	225, 595, 765
BlsI	GCNGC	3 cut(s)	226, 596, 766
Bme1390I	CCNGG	2 cut(s)	278, 422
BmeT110I	CYCGRG	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	311
BmrFI	CCNGG	2 cut(s)	278, 422
BmrI	ACTGGG	1 cut(s)	309
BmuI	ACTGGG	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	328
Bpu10I	CCTNAGC	2 cut(s)	126, 414
BpuEI	CTTGAG	1 cut(s)	584
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	619
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 61, 131
Bse1I	ACTGG	1 cut(s)	304
Bse3DI	GCAATG	1 cut(s)	297
BseBI	CCWGG	2 cut(s)	278, 422
BseDI	CCNNGG	1 cut(s)	619
BseLI	CCNNNNNNNGG	3 cut(s)	58, 61, 131
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	5 cut(s)	117, 234, 255, 405, 651
BseNI	ACTGG	1 cut(s)	304
BseRI	GAGGAG	2 cut(s)	44, 486
BseSI	GKGCMC	1 cut(s)	541
BseXI	GCAGC	3 cut(s)	236, 581, 751
BsgI	GTGCAG	3 cut(s)	243, 609, 630
BshFI	GGCC	2 cut(s)	313, 554
BsiHKAI	GWGCWC	2 cut(s)	82, 132
BsiHKCI	CYCGRG	1 cut(s)	131
BslFI	GGGAC	4 cut(s)	316, 394, 520, 647
BslI	CCNNNNNNNGG	3 cut(s)	58, 61, 131
BsmAI	GTCTC	1 cut(s)	76
BsmFI	GGGAC	4 cut(s)	316, 394, 520, 647
BsnI	GGCC	2 cut(s)	313, 554
Bso31I	GGTCTC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	3 cut(s)	82, 132, 541
Bsp143I	GATC	1 cut(s)	718
BspANI	GGCC	2 cut(s)	313, 554
BspCNI	CTCAG	5 cut(s)	118, 235, 256, 406, 650
BspPI	GGATC	1 cut(s)	726
BspQI	GCTCTTC	1 cut(s)	99
BspTNI	GGTCTC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	304
BssECI	CCNNGG	1 cut(s)	619
BssMI	GATC	1 cut(s)	718
Bst2UI	CCWGG	2 cut(s)	278, 422
Bst4CI	ACNGT	1 cut(s)	536
Bst6I	CTCTTC	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	592
BstDEI	CTNAG	5 cut(s)	126, 243, 264, 414, 637
BstDSI	CCRYGG	1 cut(s)	619
BstH2I	RGCGCY	1 cut(s)	421
BstHHI	GCGC	2 cut(s)	124, 420
BstKTI	GATC	1 cut(s)	721
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	718
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 486
BstNI	CCWGG	2 cut(s)	278, 422
BstNSI	RCATGY	1 cut(s)	713
BstSCI	CCNGG	2 cut(s)	276, 420
BstSLI	GKGCMC	1 cut(s)	541
BstV1I	GCAGC	3 cut(s)	236, 581, 751
BstV2I	GAAGAC	1 cut(s)	328
BsuI	GTATCC	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	313, 554
BtgI	CCRYGG	1 cut(s)	619
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	1 cut(s)	275
Cac8I	GCNNGC	1 cut(s)	592
CfoI	GCGC	2 cut(s)	124, 420
Cfr13I	GGNCC	1 cut(s)	311
CseI	GACGC	1 cut(s)	569
Csp6I	GTAC	2 cut(s)	297, 678
CviAII	CATG	3 cut(s)	630, 710, 725
CviQI	GTAC	2 cut(s)	297, 678
DdeI	CTNAG	5 cut(s)	126, 243, 264, 414, 637
DpnI	GATC	1 cut(s)	720
DpnII	GATC	1 cut(s)	718
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	76
Eco53kI	GAGCTC	1 cut(s)	130
Eco88I	CYCGRG	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	130
EcoRII	CCWGG	2 cut(s)	276, 420
EcoT38I	GRGCYC	1 cut(s)	132
FaeI	CATG	3 cut(s)	633, 713, 728
FaiI	YATR	7 cut(s)	504, 516, 518, 631, 711, 726, 740
FaqI	GGGAC	4 cut(s)	316, 394, 520, 647
FatI	CATG	3 cut(s)	629, 709, 724
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	3 cut(s)	225, 595, 765
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	3 cut(s)	225, 595, 765
GlaI	GCGC	2 cut(s)	123, 419
GluI	GCNGC	3 cut(s)	225, 595, 765
HaeII	RGCGCY	1 cut(s)	421
HaeIII	GGCC	2 cut(s)	313, 554
HgaI	GACGC	1 cut(s)	569
HhaI	GCGC	2 cut(s)	124, 420
Hin1II	CATG	3 cut(s)	633, 713, 728
Hin6I	GCGC	2 cut(s)	122, 418
HinP1I	GCGC	2 cut(s)	122, 418
HinfI	GANTC	4 cut(s)	456, 508, 626, 635
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	2 cut(s)	88, 297
Hpy188I	TCNGA	4 cut(s)	9, 244, 265, 640
Hpy188III	TCNNGA	2 cut(s)	453, 563
Hpy8I	GTNNAC	2 cut(s)	88, 297
HpyAV	CCTTC	5 cut(s)	58, 160, 343, 391, 635
HpyCH4III	ACNGT	1 cut(s)	536
HpyCH4V	TGCA	5 cut(s)	192, 224, 590, 611, 709
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 486
HpyF3I	CTNAG	5 cut(s)	126, 243, 264, 414, 637
Hsp92II	CATG	3 cut(s)	633, 713, 728
HspAI	GCGC	2 cut(s)	122, 418
Kzo9I	GATC	1 cut(s)	718
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	2 cut(s)	211, 728
Lsp1109I	GCAGC	3 cut(s)	236, 581, 751
MalI	GATC	1 cut(s)	720
MboI	GATC	1 cut(s)	718
MboII	GAAGA	5 cut(s)	86, 252, 328, 358, 400
MhlI	GDGCHC	3 cut(s)	82, 132, 541
MluCI	AATT	5 cut(s)	205, 256, 368, 575, 599
MlyI	GAGTC	2 cut(s)	502, 629
MmeI	TCCRAC	2 cut(s)	425, 552
MnlI	CCTC	8 cut(s)	3, 62, 65, 188, 346, 464, 469, 552
MseI	TTAA	3 cut(s)	111, 249, 654
MspA1I	CMGCKG	1 cut(s)	227
MspR9I	CCNGG	2 cut(s)	278, 422
MvaI	CCWGG	2 cut(s)	278, 422
MwoI	GCNNNNNNNGC	2 cut(s)	287, 486
NdeII	GATC	1 cut(s)	718
NlaIII	CATG	3 cut(s)	633, 713, 728
NspI	RCATGY	1 cut(s)	713
PciSI	GCTCTTC	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	456, 626
PkrI	GCNGC	3 cut(s)	226, 596, 766
PleI	GAGTC	2 cut(s)	502, 629
PpsI	GAGTC	2 cut(s)	502, 629
Psp124BI	GAGCTC	1 cut(s)	132
Psp6I	CCWGG	2 cut(s)	276, 420
PspGI	CCWGG	2 cut(s)	276, 420
PspPI	GGNCC	1 cut(s)	311
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	2 cut(s)	298, 679
RsaNI	GTAC	2 cut(s)	297, 678
SacI	GAGCTC	1 cut(s)	132
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	3 cut(s)	111, 249, 654
SatI	GCNGC	3 cut(s)	225, 595, 765
Sau3AI	GATC	1 cut(s)	718
Sau96I	GGNCC	1 cut(s)	311
SchI	GAGTC	2 cut(s)	502, 629
ScrFI	CCNGG	2 cut(s)	278, 422
SduI	GDGCHC	3 cut(s)	82, 132, 541
SetI	ASST	4 cut(s)	132, 216, 229, 766
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	5 cut(s)	205, 256, 368, 575, 599
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	2 cut(s)	276, 420
TaaI	ACNGT	1 cut(s)	536
TasI	AATT	5 cut(s)	205, 256, 368, 575, 599
TatI	WGTACW	2 cut(s)	296, 677
TfiI	GAWTC	2 cut(s)	456, 626
Tru1I	TTAA	3 cut(s)	111, 249, 654
Tru9I	TTAA	3 cut(s)	111, 249, 654
TscAI	CASTG	1 cut(s)	275
TseI	GCWGC	3 cut(s)	224, 594, 764
TspRI	CASTG	1 cut(s)	275
XapI	RAATTY	2 cut(s)	205, 368
XceI	RCATGY	1 cut(s)	713
XmiI	GTMKAC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.