Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003640

Physical Location & Seq

Genomic Coordinates Forward (+)

24300031 .. 24300273

Gene Structure 243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0177100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGCTTTCTGGTTGTCAACGTGATGGTGAATCGTCCTTGCATGTGGTCTGGTTGTTTTGGAACGCGGTGTTGAAGAGGATGAAGCGGTTCGTCTTAATGTTGGTGGTGGGGTTGTATCGTTACACTCAGGAGTGGTCACTATCTATTGTAGCCCGGAGGTATGGGCGTAAAATTTGGTTAAGAGTTGGGCCCTTTTGGCTCATGGATGTCATTTGTATTGACGGGCCCGTAACTATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAN_4 Pro_isomerase

Protein Analysis

80

Amino Acids

9.48

Weight (kDa)

9.78

Isoelectric Point (pI)

28.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17070
fragaria_vesca	FvH4_5g20480 FvH4_5g20480 FvH4_7g09211
malus_domestica	MD06G1046500.v1.1 MD07G1096900.v1.1 MD07G1097200.v1.1
prunus_persica	Prupe.2G121100_v2.0.a1 Prupe.2G121100_v2.0.a1 Prupe.2G121100_v2.0.a1 Prupe.5G054800_v2.0.a1
pyrus_communis	pycom06g03920 pycom07g08000
rosa_chinensis	RchiOBHm_Chr1g0345271 RchiOBHm_Chr7g0205801
rosa_laevigata	RLG00000003353 RLG00000028842
rosa_multiflora	Rmu_sc0000076.1_g000049 Rmu_sc0002329.1_g000010 Rmu_sc0008518.1_g000009 Rmu_sc0011244.1_g000002
rosa_roxburghii	Rroxscaffold_3G00251970 Rroxscaffold_4G00309140
rosa_rugosa	Rorug01G0177100 Rorug07G0093200
rosa_samantha	Rh1AG195200 Rh1BG161300 Rh1CG179600 Rh1DG191700 Rh7AG224700 Rh7BG219900 Rh7CG238400 Rh7DG231400
rosa_wichuraiana	Rw1G016080 Rw7G019380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	65
AciI	CCGC	2 cut(s)	65, 85
AcsI	RAATTY	1 cut(s)	171
AgsI	TTSAA	1 cut(s)	73
AoxI	GGCC	2 cut(s)	188, 224
ApaI	GGGCCC	2 cut(s)	192, 228
ApoI	RAATTY	1 cut(s)	171
Asp700I	GAANNNNTTC	1 cut(s)	86
AspS9I	GGNCC	4 cut(s)	188, 189, 224, 225
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	38
BaeGI	GKGCMC	2 cut(s)	192, 228
BanII	GRGCYC	2 cut(s)	192, 228
BccI	CCATC	1 cut(s)	17
BcnI	CCSGG	1 cut(s)	154
BglI	GCCNNNNNGGC	1 cut(s)	196
Bme1390I	CCNGG	1 cut(s)	154
BmgT120I	GGNCC	4 cut(s)	188, 189, 224, 225
BmiI	GGNNCC	2 cut(s)	190, 226
BmrFI	CCNGG	1 cut(s)	154
BpuMI	CCSGG	1 cut(s)	154
BseGI	GGATG	2 cut(s)	84, 211
BseMII	CTCAG	1 cut(s)	140
BseSI	GKGCMC	2 cut(s)	192, 228
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	2 cut(s)	190, 226
BsiSI	CCGG	1 cut(s)	154
BsnI	GGCC	2 cut(s)	190, 226
Bsp120I	GGGCCC	2 cut(s)	188, 224
Bsp1286I	GDGCHC	2 cut(s)	192, 228
BspACI	CCGC	2 cut(s)	65, 85
BspANI	GGCC	2 cut(s)	190, 226
BspCNI	CTCAG	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	2 cut(s)	190, 226
Bst6I	CTCTTC	1 cut(s)	68
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	2 cut(s)	84, 211
BstFNI	CGCG	1 cut(s)	65
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstNSI	RCATGY	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	152
BstSLI	GKGCMC	2 cut(s)	192, 228
BstUI	CGCG	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	190, 226
BtsCI	GGATG	2 cut(s)	84, 211
Cfr13I	GGNCC	4 cut(s)	188, 189, 224, 225
CviAII	CATG	2 cut(s)	41, 202
CviJI	RGCY	4 cut(s)	152, 190, 199, 226
CviKI_1	RGCY	4 cut(s)	152, 190, 199, 226
DdeI	CTNAG	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco24I	GRGCYC	2 cut(s)	192, 228
EcoO109I	RGGNCCY	1 cut(s)	189
EcoT38I	GRGCYC	2 cut(s)	192, 228
FaeI	CATG	2 cut(s)	44, 205
FaiI	YATR	3 cut(s)	42, 162, 203
FatI	CATG	2 cut(s)	40, 201
FokI	GGATG	2 cut(s)	91, 218
FriOI	GRGCYC	2 cut(s)	192, 228
HaeIII	GGCC	2 cut(s)	190, 226
HapII	CCGG	1 cut(s)	154
Hin1II	CATG	2 cut(s)	44, 205
HincII	GTYRAC	1 cut(s)	17
HindII	GTYRAC	1 cut(s)	17
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	1 cut(s)	154
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	1 cut(s)	40
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	2 cut(s)	44, 205
LpnPI	CCDG	3 cut(s)	34, 113, 167
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	3 cut(s)	119, 135, 229
MboII	GAAGA	1 cut(s)	85
MhlI	GDGCHC	2 cut(s)	192, 228
MluCI	AATT	1 cut(s)	171
MnlI	CCTC	2 cut(s)	69, 150
MroXI	GAANNNNTTC	1 cut(s)	86
MseI	TTAA	2 cut(s)	95, 179
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	1 cut(s)	154
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	196
NciI	CCSGG	1 cut(s)	154
NlaIII	CATG	2 cut(s)	44, 205
NlaIV	GGNNCC	2 cut(s)	190, 226
NmuCI	GTSAC	1 cut(s)	135
NspI	RCATGY	1 cut(s)	44
PdmI	GAANNNNTTC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	29
PspN4I	GGNNCC	2 cut(s)	190, 226
PspOMI	GGGCCC	2 cut(s)	188, 224
PspPI	GGNCC	4 cut(s)	188, 189, 224, 225
SaqAI	TTAA	2 cut(s)	95, 179
Sau96I	GGNCC	4 cut(s)	188, 189, 224, 225
ScrFI	CCNGG	1 cut(s)	154
SduI	GDGCHC	2 cut(s)	192, 228
SetI	ASST	2 cut(s)	22, 161
Sse9I	AATT	1 cut(s)	171
SsiI	CCGC	2 cut(s)	65, 85
StyD4I	CCNGG	1 cut(s)	152
TaiI	ACGT	1 cut(s)	22
TasI	AATT	1 cut(s)	171
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	2 cut(s)	95, 179
Tru9I	TTAA	2 cut(s)	95, 179
TseFI	GTSAC	1 cut(s)	135
Tsp45I	GTSAC	1 cut(s)	135
TspDTI	ATGAA	1 cut(s)	95
XapI	RAATTY	1 cut(s)	171
XceI	RCATGY	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.